Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAATTTTGGGAACTTTGTACTGAAGAGAAAAATAGATTTCATAATTCTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTATGAGTTCTTTTTCATAATTTAATTCATTGGAACCTGAACTTCGAAATTGTATTTTGTGAAAGTTGATTTTGCGGTTTCCATTTTCATTGGTGGCACTTTTTCTCTTGTAATTGGGTTGTTGGTCTGAAACGTGGTAATAGTCAAAATCTGAATCGAATAGGATTTTTCTTTAAGACGTGGATGTAGAAGTTTGAAACCAAATTCTGAACAATTGGCGAACTGTGAAGGGAATTACTATTTTGGTAAGATAGTGGGTTGAAATTTTTGTCAGGTTATCTGTTGAAAAAGATTGAAAATGAGAAGCAGTTGACTTATGAAATGAAGAATATTATAATCTAGGCCCCCTTCATTTCGTGTTGTGAATAGCAGGGGCTGTTCTTCAATCACCATTCTCAGTCTCGAAGTGCATATTTGGAGTGTTTATATAAGGCAACATTTCATAACCATTTATGACTAAGGTAATGTTATGCATAGAGTTCTCCTAAGCTAAGGATGTGAAATGAGTGTGGATGTATAGTGATGTATGTTCTCATTGTATAGGTGTTTAGTGGGAAGGCACTGGCCTCTTACTTTCTGTTGGTGGGAATATTTTCTTTCAAGGATATCTCTTCAGTCATTGTATACTCTTTAGTGTAAGAAAGTTGATCTTTAATAGTGGATTAGATTCTTTTTGTCCTCCTCTTCCATGGCATGTATACGTATGTGCTAGGGTAGCATCAATTTGTTGGTTGATTTGGCTTTCCAATACCAACCACTTTGACCTATTGCAGGCTCTAGATTTTTCCTCTAGGAAATATGTTGCATAAATCTTACAATGCTTATTTATAAGAAATTGTAGTTAATGTGTAAAAAACATAGCCTTCCTTTTAGTGTAGGATTTTCCAATAAAAATAAGATGCTTGTGTTTTTGCTGGCCTTGTGAATGATTCATTTCATCTGGAAGACCCTCAACTAACTACTCTTGTTTAGAAGCATGTTTGATATGCTATGTAACTTGACTTCATAAATGAATTTGACTATGTTACTGCTAATTTATAATTTATATTTTTTAGTGTTCCATTGAAATGGGAATCTACTTATTGAACTTAACACACAGTTATTCAAATCCTCTTTTCTACTTCTCTCTTTAGGACTAGGAATGTTTACCTTTTCAGATTTTAGAAAGGTCCTCAGTTAGATTGTCGTTCATTTCAGATTGTTCCTTCAATTAATGGTTCTGTAGAGTAACATTGACTTTCATTTGGTATCCTTAAATCTAATGTAGCTGAAATGCTGGATAAGATCAGGAAATGTCCATTATGTTATCTAAAAGATTCTGGTCGTTCAAAGCCTGTTCTCTAACTCTCAGTTAAAGCCATGGTTTTTACCCAAAAAAAAACCACTATTTTGGAATCTTCTTGATTAAAAGCTGTTGTTTAGAGTTCAATGATTTGACACTTCAGGCCTATATTTGAGATTGCAAAACGTATGACACACTTCATTCGTGGTTAATTATACCATCAAACTAATAGAAAGTGATGGCTCTTTTATGTTTTAAGTACCTTTCATAGTTTCATGTGGACAATCTGCAGTGAACTTTTTCTACTTTTATACCATTGAATTATTTAATCGTTCTAAATATAGGAAACATTTTCTTGCTTTTATTTGACTAGTGCCAATATGCACTTTGTTTGACTGACTTTCCAGCCTATTTTCAGTTAAAAAAATTTGATGTCTAATTCCTTTGATGAATACAAAATCCACAGTTCATGTTTTCATTTCACTTCCACCACCACAACTAATTGGTTGATGTGAACCTGCAGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAATTTAATCTTTTGATTGACGTTCTGCATTTGGTGTGAAGACCTGAAAAATCTGAATTGCCTATAGATTGTGTTTATACTAAGTATGTCATTTGACTGATAAACCGAGGATGGAAATTTTTTTAGCTTAGAAGCAAATGAGATGCTATTGTTGGATACTAGGGAACAACTTGCCATCAATTATTAGTTTCTTTGAGTTTCACGTCTAATTATGTTTTTGATGTTCAATGATG
mRNA sequence
GCAATTTTGGGAACTTTGTACTGAAGAGAAAAATAGATTTCATAATTCTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAATTTAATCTTTTGATTGACGTTCTGCATTTGGTGTGAAGACCTGAAAAATCTGAATTGCCTATAGATTGTGTTTATACTAAGTATGTCATTTGACTGATAAACCGAGGATGGAAATTTTTTTAGCTTAGAAGCAAATGAGATGCTATTGTTGGATACTAGGGAACAACTTGCCATCAATTATTAGTTTCTTTGAGTTTCACGTCTAATTATGTTTTTGATGTTCAATGATG
Coding sequence (CDS)
ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAA
Protein sequence
MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKGDKS
Homology
BLAST of Tan0001709 vs. ExPASy Swiss-Prot
Match:
F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41
Identity = 112/202 (55.45%), Postives = 134/202 (66.34%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQI HSP SF+ +PYHL T +F IK QN S+ E D + S
Sbjct: 1 MALQI--HSPCSFSTRPYHLFFT----TRNPRFAIKCQN-SQIES------DTTEDPSRS 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
K SSSS GFGS +S S K S A G +KGK +R + RR+P+EKPVF+ E
Sbjct: 61 KNSSSSGVGFGSPASSSSPAKKLS---AATSGNKKGKGKR-EVNRRAPVEKPVFMSEEGA 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LF
Sbjct: 121 AKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDK 203
VAGT AYGV KY+QNEK+KG +
Sbjct: 181 VAGTTAYGVLKYIQNEKMKGQE 185
BLAST of Tan0001709 vs. NCBI nr
Match:
XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 336.3 bits (861), Expect = 1.9e-88
Identity = 177/203 (87.19%), Postives = 184/203 (90.64%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQIIHHSPSSF RKPYHLP TPLHFPSK +F IKSQNPSESEKPISK VDDAP+ T
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
SSAQGFGS SSQS T+SKSSPKA KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197
BLAST of Tan0001709 vs. NCBI nr
Match:
XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 334.0 bits (855), Expect = 9.3e-88
Identity = 176/203 (86.70%), Postives = 183/203 (90.15%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQIIHHSPSSF RKPYHLP PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
SSAQGFGS SSQS T+SKSSPKA KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197
BLAST of Tan0001709 vs. NCBI nr
Match:
XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])
HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 180/203 (88.67%), Postives = 186/203 (91.63%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQI+HHSPSSF RKPYHLPN L+FPSK +F I SQNPSESEKPISK VDDAPLATSS
Sbjct: 1 MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDAPLATSS 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
K SSSS QGFGSSSSQS TTSKSSPKA KQKGKRQRASIIRRSP+EKPVFVG+VDE
Sbjct: 61 KPSSSSPQGFGSSSSQSTTTSKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGKVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGV KYLQNEKIK +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199
BLAST of Tan0001709 vs. NCBI nr
Match:
XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])
HSP 1 Score: 328.6 bits (841), Expect = 3.9e-86
Identity = 174/203 (85.71%), Postives = 182/203 (89.66%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQIIHHSPSSF RKPYHLP TPL+FPSK +F IKSQ+PSESEKPISK VDDA + T
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT-- 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
SSAQGFGS SSQS T+SKSSPKA KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197
BLAST of Tan0001709 vs. NCBI nr
Match:
KAG6600161.1 (Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 172/199 (86.43%), Postives = 179/199 (89.95%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQIIHHSPSSF RKPYHLP PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
SSAQGFGS SSQS T+SKSSPKA KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIK 200
VAGTVAYGVSKYLQNEK+K
Sbjct: 181 VAGTVAYGVSKYLQNEKLK 193
BLAST of Tan0001709 vs. ExPASy TrEMBL
Match:
A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)
HSP 1 Score: 334.0 bits (855), Expect = 4.5e-88
Identity = 176/203 (86.70%), Postives = 183/203 (90.15%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQIIHHSPSSF RKPYHLP PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
SSAQGFGS SSQS T+SKSSPKA KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197
BLAST of Tan0001709 vs. ExPASy TrEMBL
Match:
A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)
HSP 1 Score: 328.6 bits (841), Expect = 1.9e-86
Identity = 174/203 (85.71%), Postives = 182/203 (89.66%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQIIHHSPSSF RKPYHLP TPL+FPSK +F IKSQ+PSESEKPISK VDDA + T
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT-- 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
SSAQGFGS SSQS T+SKSSPKA KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197
BLAST of Tan0001709 vs. ExPASy TrEMBL
Match:
A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)
HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 171/203 (84.24%), Postives = 183/203 (90.15%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQI+HHSPSSF +KPYHLPN LHF SK +F IKSQNPSESEKPISKIVDDAP+ATSS
Sbjct: 1 MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
K S+SS QGFGSSS QS +TSKS+PK+ KQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 KPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGV KYLQNEKIK +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199
BLAST of Tan0001709 vs. ExPASy TrEMBL
Match:
A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)
HSP 1 Score: 321.2 bits (822), Expect = 3.0e-84
Identity = 170/203 (83.74%), Postives = 183/203 (90.15%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQI+HHSPSSF +KPYHLPN LHF SK +F IKSQNPSESEKPISKIVDDAP+ATSS
Sbjct: 1 MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
K +SS+QGFGSSS QS +TSKS+PK+ KQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61 KPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
VAGTVAYGV KYLQNEKIK +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199
BLAST of Tan0001709 vs. ExPASy TrEMBL
Match:
A0A6J1CH98 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011420 PE=4 SV=1)
HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 176/205 (85.85%), Postives = 182/205 (88.78%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQN--PSESEKPISKIVDDAPLAT 60
MALQII HSPSSF RKPY LP PL FPSKR F IKSQN SESEK ISK+VDDA +AT
Sbjct: 1 MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
Query: 61 SSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEV 120
SSKASSSSAQGFGSS +QS TSK SPKA P KGKQKGKRQRASIIRRSP+EKPVFVG+V
Sbjct: 61 SSKASSSSAQGFGSSPTQS--TSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
Query: 121 DEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVS 180
DEEAAKEQ RNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
Query: 181 LFVAGTVAYGVSKYLQNEKIKGDKS 204
LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
BLAST of Tan0001709 vs. TAIR 10
Match:
AT5G51545.1 (low psii accumulation2 )
HSP 1 Score: 171.4 bits (433), Expect = 7.4e-43
Identity = 112/202 (55.45%), Postives = 134/202 (66.34%), Query Frame = 0
Query: 1 MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
MALQI HSP SF+ +PYHL T +F IK QN S+ E D + S
Sbjct: 1 MALQI--HSPCSFSTRPYHLFFT----TRNPRFAIKCQN-SQIES------DTTEDPSRS 60
Query: 61 KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
K SSSS GFGS +S S K S A G +KGK +R + RR+P+EKPVF+ E
Sbjct: 61 KNSSSSGVGFGSPASSSSPAKKLS---AATSGNKKGKGKR-EVNRRAPVEKPVFMSEEGA 120
Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LF
Sbjct: 121 AKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLF 180
Query: 181 VAGTVAYGVSKYLQNEKIKGDK 203
VAGT AYGV KY+QNEK+KG +
Sbjct: 181 VAGTTAYGVLKYIQNEKMKGQE 185
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| F4KDA6 | 1.0e-41 | 55.45 | Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_023554492.1 | 1.9e-88 | 87.19 | protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo] | [more] |
| XP_022941727.1 | 9.3e-88 | 86.70 | protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828.... | [more] |
| XP_038899637.1 | 1.6e-87 | 88.67 | protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida] | [more] |
| XP_022973018.1 | 3.9e-86 | 85.71 | protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima] | [more] |
| KAG6600161.1 | 2.5e-85 | 86.43 | Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1FNA7 | 4.5e-88 | 86.70 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=... | [more] |
| A0A6J1IBT8 | 1.9e-86 | 85.71 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
| A0A1S3AXX6 | 1.0e-84 | 84.24 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... | [more] |
| A0A5A7VJY0 | 3.0e-84 | 83.74 | Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A6J1CH98 | 2.0e-83 | 85.85 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G51545.1 | 7.4e-43 | 55.45 | low psii accumulation2 | [more] |
