Tan0001425 (gene) Snake gourd v1

Overview


Name	Tan0001425
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	General transcription factor IIH subunit 5-like
Location	LG01: 21894586 .. 21900256 (+)
RNA-Seq Expression	Tan0001425
Synteny	Tan0001425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGAGAATTATGGTGGGATTAGTACCTGTTTTGGTGGTGATGGTTTTGTGGGTTACTTCAAAATCATCTCAATTTTTTCTAAGTACTCAGCTTCTTGGCAGTCCTCATTTCATGTTCTCAATCTTCAACTCCATAATTCTTCTTATAACTGTGAGAGTACACCATGAGCCACCACCTCATCAACAACTTGAAATAATGGAACTTCTTCAATCTCCCTATCATAAGCCTCATCAACACGTTGAATTTCGTGATCGTGACGAAGGTGAAGATAAAAGAGAAGACGATGATGAAAATGAAGATAGCAGTCGAAATGAGAAAGAAGACCGAGATGGAGATGAAATATTCAAGCAATTGAATGAAGAAGAAGATGAATATGACGACGACGACGATAAAGATGAAACCGAGCGATGGGACGAGGAAGAGGAGGAAGAAGAAGAAGAAGATGAGGAATTGGAGAAGAGGATAGAAGAATTCATAGCTAAGGTGAACAAGATATGGAAAGAAGAGAAGTTGAGAGACAATTTGCTTATTCAAATTTGTTCTAGTAATAATGGTTGCATCTGAAATTACATTAAAGTGCTTTTTTTTTTCTTTTCTAAAAGGCTTTTTTCCTTTTTTTTTTTTAATGATCAAGATTTATTACCGCATGATGCTAAAAGAAAATTTGCATAAATTTGAACTATTCCACTAGTTTAATCTCTCTCTCTCTTTTTTGTTCTAGTTTCGTTTATTGGTTAAAAAATTAATTGAATCAAATTGAAGTGAAATTATAACAATATTGAATTCTATGGTAAGTGTAAGAGTGTTCACTCAACAAGTAAGTCGCCTGAAACCAATAAACTAAACATAATTAAATAAACACTCTCAAAGTCTTACGTTTTATGTTCCATAAGTTTAAGAAGTTAATTTTAACAAATAGAGACCAAGCTGAAAAAATCTCTCTATTATTTTCACTAATTTCATGCCCAAGAATGTCAATCTCAGAGGAAAAAAAAAATCCAAGAGTGTTTACTCCATCATGATTTCTTTAGTTAAAAATGCAAAAATATTTCTTGTGCTAAATCTACTAAATTGGGTGTCGCTAAAAAAAAAAAAAATTTAAATGAAAAGAATTGAAATTTCCGTCATCATAAAAATCTAGTTCGCTCTCACTTTTAAAAAGTCTATTTTAACTAGAAGTGAGCAAAAAAAAGACCGAAAACTGACTCAATCGATCAAAACCGTTCGATTTTTCCCTTGGGACTATTATTGTTTTTACCCTTGGCTTGCTCCAAATCGACCAAACCGATCAATATTTTTTTAAAAAAAATTATATATAATACTAATACTAATACTACTACTAATAATAAACAAAAATGGTAAAAATTTTATATATTTATATTATATCTTATAAATATGTTAAATAATAATTAAATAAATAATTTAAAAAACTGACTGACTGAACCGACCAGTCGATCAGTTTTGGTCAGTTTAAGGTAGTAAAAAAGACCGACCGAACCGACCAAATTTAGTCGGTTCGACGTCGGTTGGGGTCAAAAATTGATCTCGATCTATCGATGATCACCCCTAATTTTAACCAATAAAATTTCATGTTTATTTTATTTTTTACTCTAAAACTTTTAAAATATCTATTTTATTGCCTAATTTTTTAAAATAATAATTATTTTGACATTCACCTTTATATTGTCATTAATTATTTGATAGATCAATAATATATATTATCATGACCATGTATTTGTATCACAGGGGCCGATTACCTAATTTTAACCAATAAAATTTCATGTTTATTTTATTTTTTACTCTAAAACTTTTAAAATATCTATTTTAGTCCCTAATTTTTTAAAATAATAATTATTTTGACATTCACCTTTATATTGTCATTAATTATTTGATAGATCAAATAATATATATTGAGCATGTATTTGTGTCACAGGGGCCGATTAGGGTAGGTATTGAGTAGAAAGATATTCAGTACCACGATGACCATGATTTTTTTTTTAAAAAAAAAAATTATAAATTTAGTTCTTAAATTTTAAAAATGTCCAATATTTTTTTGTAATTTCAATTTTATATCAAATAAATATTTAATTTTGTGTCTAATAATGACTAATTAGACACATTTTGAAAATTAGAATCTATTGAGTATAAATTAAAAGTTAGCGATCATAAAGTTAGATTTATTAGATACAAAAGTTTAGAAACCTATTAGGCATCGTACTAAAAAAAACTCAATGACCAAACTTGTAGTTCAAACTTTTTTTTAAAAAAATTATTTAAGAATATAAAATAGACACTTTCAAAATTAGGAAAAAAGTGTAATTAACATAAAAGTTTAGGACCAAAATGAAAATTTAAACCAAATGTTAAAACTAAAATGAAAAAAAAGATTAAATTTTATGTTTAGTTTCTAAATTTTTAACTTTATGTCTCTCGGTTTTGAAATGTTAAAAGTATCTTTTCTTTAGTACAATTGGGGTGGAGAGGATTCAAACTACAGACCTCGTGGTCATGTTAAAAGTATCTAATAGGTCTTGGACTTTCAATTTTGTGATTGATAAGTCTCTACACTTCAAAAAAATAAAATGTTTGTAAACTTTTAATTTTGTGTCTAAGAAGTGCTCAAACTTTCAATTCAGTATTTAATAAATCAACCTATTTGATATTTTGTAAATTTATGAATCTATTCGACCAAAAATTGAAATTTCTGAATTCATTAAACATTTTAAAAGTTACATAGACATAATAGACACAAAATTGAATGTTTGACCGTTGTTAAAAATTAAAGAACACACAACCCTGGAAAAATTATTGTCCTAATTACATAAATTTTTTGTCAACATGCCGCTTTTTTAGTACAATAGGAATTAGGGGAATTCAAACCATAAATCCCAGGGTCATTAATACATTTGAGAAGCTAGTTGAACTAGCTAATTAACATTTTCATTCCATCATAAAAAAAATCAACAAAATATAAATAAAATATCGCTAATGTAGAACTATTATTAATAATAAGAAATTAAAATTTATTAAAAAATTGGTGAAATGCTTATTTTTTTAATTTAAATACTTTTAATGAATTTTTATATCTATAATTTTTTAAATATCCATCACATCAAAGGCAATGTGAATTTAACACGATAATTAACATTTATCCTAAATCAAGAGGCATTTGAATATCTATCCCTTCGCCATTTTATCAATATTTAAAAGCTTATTTCTAATGGTCAATAAGAGCATAGTTCAACTGGCATCAAGTAAGATTTATGATCAAGAAGTCATGGGTACGAATATTTACATATGTTTTGATATTTTTTTCAACGTATATATTTAAATATGTCCACATAAACAACAATACAGATGCAAATACAACTTTTCCTTCCATGAATTTTACAAAAAAAGTCTTAAAAGGTTATTTTAAAACAAACATTAAAATTACAGAATTAAAATAAATTTTTTCAAAATCAAAGAGTATAATTGAAACCAACCACGTAAGTGTTGAAGAATAATCGAAACCAACCACACATTTTTTATAATTTAACCCAAAAAAAAAAAAATTCCAATTGGTTTCTAAATTCTCACAGTTTTGAGTTGCAGTAGCGCCATTCTTTTCTCCTTCGAGCACTCTAATTCGGATCTTCTTCTTCCTTTTTTCTCGTCCGCGGAAGAACAAAACACCGGTAAGTTCATGCCACTGATTACGCTGATGCCTTATCTCGATCTAGGGTTTTGTGGTGTTCAACTATATTTTCGCTTCTCTTAACCCATTTTTATGTTTCCATCAAGTTCGTGGATAAAATCTCACTTTGACGCGCTCAAAAATGAACATCCTTTGTTTTATTCCTCTATGGAACTTAAATTTGTTCTTCTGGGCCAATCGTCGACGATGATCAACTCGATTAAGCTCTGAGAATTCAATATTTTTGATTAATCACTTGGAAATTGGAATGCAGGGGCTTTCAGTTTTCGTTGCTTGCTGCTTTCCCTTTGAGGGTGGACTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGGTAATACTTTAAAGATTGATATTAATTTGATAGGGGTGCACTTTCTCCTGTTTGATTATTGAAAGAATCTAGTTTTCTTCTGTTAGCTGTTTCATTCTTCTCTTTGGAATTGTTATGACATTTGAATGACAGAACTTCTAAGAGACTAGAAACTTCCATTGTGATATTTTCTATTATTACTCTCGGTTATGTTCTTTTTTTCATTTTTTCTTCTCCCTGTTTTCTTGATGATCTCTTTTGAACATTGGGATAGAATCTCTGTGATTATAAAGATCAGAAAGTCTCACTCTGATGTTGTCTACTAATATTAGGGGTCATGTTCTTTTCTTCTTCTTTTTTTTTTTCAAATCCTTCTTTGCTTGATGATCTCTTTTGAACATTGTGTTAGAGTCTTTGGGATTGTTTTGACATTTGAAATGAGAGTGCTTCTTAAAAACATCAGAAAGTTTCACTGTGATGTTGTCTACTTTGGGGTCATGTTCTTTTCTTCTTTCCTTTTATCCCTCTTTGCTTTTGATGATCTCTTTGAACACTGGCATATTGTCTTTGGAATTAGTATGGCATTTGAAATGACAGCGCTTTGAAAGACTAGAAGCTTTCATTGTGATATTGTTTATTACTTGGGATCTTGTTCATTTCTTTTTCTTCTTTTTTTCTCTCCCTGTTTTTTTGATGATCTCTTCTGAACACTAGGATAGAATCTTTGGGATGTTGCTATGAGTTTTTGTTTCTCATTGAAAGTAAAGAGGTTTTAAAAAATTATGACCTTGGCAGATCCTTGGTTCATAAAATTTGTTATTAGCAATAGTTTGCAAAGCCTGATGTATGTTTGTGTATTCTATCGTTGCCATTCACCAATGGTAATTGCTTTCTGTGTCTTGAAGTGATCATGGTTTTTATGGATGTTGTTGACCTTTTCGATTACCTCTCGGTTGATAACCATTTGGCTTTTGGTCTTTGGTTTTTGAAAACTAAACTTATAAATACAACTTCTACCTATCTTTGTTTTATTCTCTACTTTTGCCAATGTTTTCAAAATTTCGGCAAGTTATGAAAACTAAAAGAAATTAGTTTTTAAAATTTTACTTTTGTTTTTAGAATTTGGCTAAGAATTCAAATCTTTCCTAAAGAAAGATGAAAAGCATGGTAAATTAATGATTAGAAAACAAGCACAATTCTTAAATATAAAAACCAAATGTTTATCAAATAGAATTGGTCCCTGGGTGATCGAGTATCCAGTCTTTATATCCAAAGCTGGTATGTGTTCGATATTACCTTTCCTTCCCGTCTTGAATTGGGATCTTATGACAACTTTATCCTAGTTTTTCTAAGGGAGTTGAACGGATCAAAATATGCAGAATTTCTTATTTTCACGATGGATAGATTCTAGGCATTTTTTTTTTTTTTTCTGTTCTTAAGATAAATGATTTTCTTCCTTGGTGCAGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTACCTGCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTGCAACCCCATGCTGCTGAGATGATTCGAAATGCCATTTCGGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA

mRNA sequence

ATGGGAATGAGAATTATGGTGGGATTAGTACCTGTTTTGGTGGTGATGGTTTTGTGGGTTACTTCAAAATCATCTCAATTTTTTCTAAGTACTCAGCTTCTTGGCAGTCCTCATTTCATGTTCTCAATCTTCAACTCCATAATTCTTCTTATAACTGTGAGAGTACACCATGAGCCACCACCTCATCAACAACTTGAAATAATGGAACTTCTTCAATCTCCCTATCATAAGCCTCATCAACACGTTGAATTTCGTGATCGTGACGAAGGTGAAGATAAAAGAGAAGACGATGATGAAAATGAAGATAGCAGTCGAAATGAGAAAGAAGACCGAGATGGAGATGAAATATTCAAGCAATTGAATGAAGAAGAAGATGAATATGACGACGACGACGATAAAGATGAAACCGAGCGATGGGACGAGGAAGAGGAGGAAGAAGAAGAAGAAGATGAGGAATTGGAGAAGAGGATAGAAGAATTCATAGCTAAGGGGCTTTCAGTTTTCGTTGCTTGCTGCTTTCCCTTTGAGGGTGGACTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTACCTGCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTGCAACCCCATGCTGCTGAGATGATTCGAAATGCCATTTCGGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA

Coding sequence (CDS)

ATGGGAATGAGAATTATGGTGGGATTAGTACCTGTTTTGGTGGTGATGGTTTTGTGGGTTACTTCAAAATCATCTCAATTTTTTCTAAGTACTCAGCTTCTTGGCAGTCCTCATTTCATGTTCTCAATCTTCAACTCCATAATTCTTCTTATAACTGTGAGAGTACACCATGAGCCACCACCTCATCAACAACTTGAAATAATGGAACTTCTTCAATCTCCCTATCATAAGCCTCATCAACACGTTGAATTTCGTGATCGTGACGAAGGTGAAGATAAAAGAGAAGACGATGATGAAAATGAAGATAGCAGTCGAAATGAGAAAGAAGACCGAGATGGAGATGAAATATTCAAGCAATTGAATGAAGAAGAAGATGAATATGACGACGACGACGATAAAGATGAAACCGAGCGATGGGACGAGGAAGAGGAGGAAGAAGAAGAAGAAGATGAGGAATTGGAGAAGAGGATAGAAGAATTCATAGCTAAGGGGCTTTCAGTTTTCGTTGCTTGCTGCTTTCCCTTTGAGGGTGGACTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTACCTGCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTGCAACCCCATGCTGCTGAGATGATTCGAAATGCCATTTCGGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA

Protein sequence

MGMRIMVGLVPVLVVMVLWVTSKSSQFFLSTQLLGSPHFMFSIFNSIILLITVRVHHEPPPHQQLEIMELLQSPYHKPHQHVEFRDRDEGEDKREDDDENEDSSRNEKEDRDGDEIFKQLNEEEDEYDDDDDKDETERWDEEEEEEEEEDEELEKRIEEFIAKGLSVFVACCFPFEGGLFDIMVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEFRDQNSYEKPT

Homology

[Close]

BLAST of Tan0001425 vs. ExPASy Swiss-Prot
Match: Q6NNM0 (General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thaliana OX=3702 GN=TFB5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-26
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKG+F+SCDIPM QFI+N N S+P SQ+FIIH+LD+TH+FVQPH  +MIR+AIS+F
Sbjct: 1   MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. NCBI nr
Match: KAG6596831.1 (General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.4 bits (620), Expect = 2.1e-60
Identity = 170/272 (62.50%), Postives = 192/272 (70.59%), Query Frame = 0


Query: 1   MGMRIMVGLVPVL---------VVMVLWVTSKSSQFFLSTQLLGSPHFMFSIFNSIILLI 60
           MGMRIMVGLV V+          V+VL VTSKSSQFFLST+LLGSPHFMFSIFNSIILLI
Sbjct: 1   MGMRIMVGLVAVMAAAAAAAATTVVVLLVTSKSSQFFLSTKLLGSPHFMFSIFNSIILLI 60

Query: 61  TVRVHHEPPPHQ---QLEIMELLQSPYHKPH---QHVEFRDRDEGEDKREDDDENEDSSR 120
            V  +H PPPHQ    +         YH+ +   QH+EF   +        DDE ED+++
Sbjct: 61  IV-TYHPPPPHQSPYHIRKGSCYVESYHEYYTTCQHIEFCTHN-------GDDEYEDNNQ 120

Query: 121 NEKEDRDGDEIFKQLNEEEDEYDDD-DDKDETERWDEEEEEEEEEDEELEKRIEEFIAK- 180
           NEK+DRD DE      E+ DE D+D DD++ET R D     EE+ D+ELEKRIEEFIAK 
Sbjct: 121 NEKDDRDNDE-----TEQCDEEDEDVDDENETRRCD-----EEDNDDELEKRIEEFIAKN 180

Query: 181 ---GLSVFVACCFPFEGGLFDIMVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHIL 240
              G   F     PFE G FDIMVNAIKGLFISCDIPM QFIINYNASLPAS RFIIHIL
Sbjct: 181 KHTGAFSFRCLLLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHIL 240

Query: 241 DNTHMFVQPHAAEMIRNAISEFRDQNSYEKPT 253
           DNTHMFVQP+ A+MIRNA+SEFRDQNSYEKPT
Sbjct: 241 DNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT 254

[Close]

BLAST of Tan0001425 vs. NCBI nr
Match: KAG7028360.1 (RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-58
Identity = 172/287 (59.93%), Postives = 195/287 (67.94%), Query Frame = 0


Query: 1   MGMRIMVGLVPVL----------VVMVLWVTSKSSQFFLSTQLLGSPHFMFSIFNSIILL 60
           MGMRIMVGLV V+           V+VL VTSKSSQFFLST+LLGSPHFMFSIFNSIILL
Sbjct: 1   MGMRIMVGLVAVMAAAAAAAATTTVVVLLVTSKSSQFFLSTKLLGSPHFMFSIFNSIILL 60

Query: 61  ITVRVHHEPPPHQ---QLEIMELLQSPYHKPH---QHVEFRDRDEGEDKREDDDENEDSS 120
           I V  +H PPPHQ    +         YH+ +   QH+EF   +        DDE ED++
Sbjct: 61  IIV-TYHPPPPHQSPYHIRKGSCYVESYHEYYTTCQHIEFCTHN-------GDDEYEDNN 120

Query: 121 RNEKEDRDGDEIFKQLNEEEDEYDDD-DDKDETERWDEEEEEEEEEDEELEKRIEEFIAK 180
           +NEK+DRD DE      E+ DE D+D DD++ET R D     EE+ D+ELEKRIEEFIAK
Sbjct: 121 QNEKDDRDNDE-----TEQCDEEDEDVDDENETRRCD-----EEDNDDELEKRIEEFIAK 180

Query: 181 G-------------LSVFVACCF-----PFEGGLFDIMVNAIKGLFISCDIPMAQFIINY 240
                         L+ F A  F     PFE G FDIMVNAIKGLFISCDIPM QFIINY
Sbjct: 181 VNKRWREEKLQDNLLNQFWAFSFRCLLLPFERGRFDIMVNAIKGLFISCDIPMGQFIINY 240

Query: 241 NASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEFRDQNSYEKPT 253
           NASLPAS RFIIHILDNTHMFVQP+ A+MIRNA+SEFRDQNSYEKPT
Sbjct: 241 NASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT 269

[Close]

BLAST of Tan0001425 vs. NCBI nr
Match: XP_038876855.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-29
Identity = 111/171 (64.91%), Postives = 130/171 (76.02%), Query Frame = 0


Query: 1   MGMRIMVGLVPVLVVMVLWVTSKSSQFFLSTQLLGSPHFMFSIFNSIILLITVRVHHEPP 60
           MGMRIMVGLVP+LVVM+LWVTSKSSQ FLS+ L  SPH +FSIFNSIILLIT+R +HEP 
Sbjct: 15  MGMRIMVGLVPILVVMILWVTSKSSQIFLSSHLFVSPHLIFSIFNSIILLITMR-NHEPH 74

Query: 61  PHQQLEIMEL-LQ-SPYHKPHQHVEFRDRDEGEDKREDDDEN----EDSSRNEKED--RD 120
           P +Q EIMEL LQ SPYHKPHQ +EF   D+ ED RE+D++     E  ++NEKED   D
Sbjct: 75  PREQFEIMELTLQLSPYHKPHQDIEFSACDQREDTREEDEDEDKNVEYGNKNEKEDEFND 134

Query: 121 GDEIFKQLNEEEDEYDDDDDKDETERWDEEEEEEEEEDEELEKRIEEFIAK 164
            DEI KQLNE+E E D+D+D+DE          +EEEDEELEKRIEEFIAK
Sbjct: 135 EDEI-KQLNEKEHE-DEDNDRDEV--------GDEEEDEELEKRIEEFIAK 174

[Close]

BLAST of Tan0001425 vs. NCBI nr
Match: XP_008448918.1 (PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP_008448919.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 7.9e-28
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKG+FISCD+PMAQFIINYNASLPAS RFIIHILDNTHMFVQPH A+MIRNAISEF
Sbjct: 1   MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 243 RDQNSYEKPT 253
           RDQ SYEKPT
Sbjct: 61  RDQISYEKPT 70

[Close]

BLAST of Tan0001425 vs. NCBI nr
Match: XP_022152732.1 (RNA polymerase II transcription factor B subunit 5 [Momordica charantia] >XP_022152733.1 RNA polymerase II transcription factor B subunit 5 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 7.9e-28
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKGLFISCD+PMAQFIINYNASLPASQRFIIHILDNTHMFVQP  A MI+NAISEF
Sbjct: 1   MVNAIKGLFISCDVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. ExPASy TrEMBL
Match: A0A1S3BK87 (RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LOC103490941 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKG+FISCD+PMAQFIINYNASLPAS RFIIHILDNTHMFVQPH A+MIRNAISEF
Sbjct: 1   MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 243 RDQNSYEKPT 253
           RDQ SYEKPT
Sbjct: 61  RDQISYEKPT 70

[Close]

BLAST of Tan0001425 vs. ExPASy TrEMBL
Match: A0A6J1DFN4 (RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=3673 GN=LOC111020387 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKGLFISCD+PMAQFIINYNASLPASQRFIIHILDNTHMFVQP  A MI+NAISEF
Sbjct: 1   MVNAIKGLFISCDVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. ExPASy TrEMBL
Match: A0A5N5HYA4 (General transcription factor IIH subunit 5-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_028816 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNA+KGLFISCDIPMAQFIINY+ SLPASQRFIIH+LD+TH+FVQPHAAEMIRNAI+EF
Sbjct: 1   MVNAVKGLFISCDIPMAQFIINYDNSLPASQRFIIHVLDSTHLFVQPHAAEMIRNAIAEF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. ExPASy TrEMBL
Match: A0A6J1L2N1 (RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498544 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-28
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKGLFISCDIPM QFIINYNASLPAS RFIIHILDNTHMFVQP+ A+MIRNA+SEF
Sbjct: 1   MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. ExPASy TrEMBL
Match: A0A6J1FX17 (RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111448261 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-28
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKGLFISCDIPM QFIINYNASLPAS RFIIHILDNTHMFVQP+ A+MIRNA+SEF
Sbjct: 1   MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. TAIR 10
Match: AT1G12400.1 (Nucleotide excision repair, TFIIH, subunit TTDA )

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-27
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHILDNTHMFVQPHAAEMIRNAISEF 242
           MVNAIKG+F+SCDIPM QFI+N N S+P SQ+FIIH+LD+TH+FVQPH  +MIR+AIS+F
Sbjct: 1   MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 243 RDQNSYEKPT 253
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Tan0001425 vs. TAIR 10
Match: AT1G62886.1 (Nucleotide excision repair, TFIIH, subunit TTDA )

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-20
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 183 MVNAIKGLFISCDIPMAQFIINYNASLPASQRFIIHI--LDNTHMFVQPHAAEMIRNAIS 242
           MVN+IKG+FISCD+PMAQFI + N SLPASQ+FII +  LD T MFV+P+A EMIR+A+ 
Sbjct: 1   MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60

Query: 243 EFRDQNSYEK 251
           +FRD+NSY K
Sbjct: 61  KFRDENSYAK 70

The following BLAST results are available for this feature:

BLAST of Tan0001425 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNM0	2.6e-26	75.71	General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thal...	[more]

BLAST of Tan0001425 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596831.1	2.1e-60	62.50	General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita...	[more]
KAG7028360.1	2.5e-58	59.93	RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrospe...	[more]
XP_038876855.1	1.1e-29	64.91	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_008448918.1	7.9e-28	91.43	PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP...	[more]
XP_022152732.1	7.9e-28	92.86	RNA polymerase II transcription factor B subunit 5 [Momordica charantia] >XP_022...	[more]

BLAST of Tan0001425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK87	3.8e-28	91.43	RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1DFN4	3.8e-28	92.86	RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=367...	[more]
A0A5N5HYA4	3.8e-28	90.00	General transcription factor IIH subunit 5-like OS=Pyrus ussuriensis x Pyrus com...	[more]
A0A6J1L2N1	6.5e-28	91.43	RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1FX17	6.5e-28	91.43	RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662...	[more]

BLAST of Tan0001425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12400.1	1.9e-27	75.71	Nucleotide excision repair, TFIIH, subunit TTDA	[more]
AT1G62886.1	2.9e-20	67.14	Nucleotide excision repair, TFIIH, subunit TTDA	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..154
None	No IPR available	PANTHER	PTHR28580:SF1	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	coord: 183..252
IPR009400	TFIIH subunit TTDA/Tfb5	SMART	SM01395	Tbf5_2	coord: 183..250 e-value: 1.6E-32 score: 124.0
IPR009400	TFIIH subunit TTDA/Tfb5	PFAM	PF06331	Tfb5	coord: 183..250 e-value: 1.5E-25 score: 88.9
IPR009400	TFIIH subunit TTDA/Tfb5	PANTHER	PTHR28580	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	coord: 183..252
IPR035935	TFB5-like superfamily	GENE3D	3.30.70.1220		coord: 183..250 e-value: 1.5E-24 score: 87.7
IPR035935	TFB5-like superfamily	SUPERFAMILY	142897	TFB5-like	coord: 188..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001425.1	Tan0001425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006294	nucleotide-excision repair, preincision complex assembly
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex