Tan0001393 (gene) Snake gourd v1

Overview


Name	Tan0001393
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 18865346 .. 18865498 (+)
RNA-Seq Expression	Tan0001393
Synteny	Tan0001393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTCAGAATCAACAGCCCAAGCACCCGGAAATGGATTTGGGAGCCGATCGGGTGGGAAATTGAAGGAGTTGGGTGCTCCGAATCGGAAAAAAATGGCGGTGGCGGAGTGCCGGAAAGAGCCGGGAGGAGAATTACCGGCTCCCTGTAG

mRNA sequence

ATGAGCTTCAGAATCAACAGCCCAAGCACCCGGAAATGGATTTGGGAGCCGATCGGGTGGGAAATTGAAGGAGTTGGGTGCTCCGAATCGGAAAAAAATGGCGGTGGCGGAGTGCCGGAAAGAGCCGGGAGGAGAATTACCGGCTCCCTGTAG

Coding sequence (CDS)

ATGAGCTTCAGAATCAACAGCCCAAGCACCCGGAAATGGATTTGGGAGCCGATCGGGTGGGAAATTGAAGGAGTTGGGTGCTCCGAATCGGAAAAAAATGGCGGTGGCGGAGTGCCGGAAAGAGCCGGGAGGAGAATTACCGGCTCCCTGTAG

Protein sequence

MSFRINSPSTRKWIWEPIGWEIEGVGCSESEKNGGGGVPERAGRRITGSL

Homology

[Close]

BLAST of Tan0001393 vs. NCBI nr
Match: KGN52998.1 (hypothetical protein Csa_014811 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1  MSFRINSPSTRKWIWEPIGWEIEGVGCSESEKNGGGGVPERAGRRI 47
          M FRINSPSTRKW  + IG +I  V   +SEKN GGGVPERAG+ I
Sbjct: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNSGGGVPERAGKGI 46

[Close]

BLAST of Tan0001393 vs. ExPASy TrEMBL
Match: A0A0A0KU19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G010970 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-06
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1  MSFRINSPSTRKWIWEPIGWEIEGVGCSESEKNGGGGVPERAGRRI 47
          M FRINSPSTRKW  + IG +I  V   +SEKN GGGVPERAG+ I
Sbjct: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNSGGGVPERAGKGI 46

The following BLAST results are available for this feature:

BLAST of Tan0001393 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001393 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52998.1	1.1e-05	65.22	hypothetical protein Csa_014811 [Cucumis sativus]	[more]

BLAST of Tan0001393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU19	5.3e-06	65.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G010970 PE=4 SV=1	[more]

BLAST of Tan0001393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001393.1	Tan0001393.1	mRNA