Tan0001301 (gene) Snake gourd v1

Overview


Name	Tan0001301
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotrans_gag domain-containing protein
Location	LG07: 51309457 .. 51309807 (+)
RNA-Seq Expression	Tan0001301
Synteny	Tan0001301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGACAAAACAACTAAGCAAGTCGCATGTCGACCGACTAGTTGAAATTGAAGAGCAGTTGCTATTCTTGAGGGACACACCTGACACGATGCGATTCCTCGAAGACCAAATGAAAAATGTCCAAGAGGCAGTGGGTAAAGTAAGGGCCTTGAATGCCCGACTCGATGGGTTACCAATACGAGAACTGACGTTGAGGGTTGACACCCTAGAAGATAAAGCTACACGTCCCAGTAGCTTCGAACATGGAGATAGCTCCACCGGCTCTGCCGCACACATAGAAGAACGTGTGGAAGAGCTAGATAATACACAAAAGACCATGATGAAGTTGTTCAACGATCTCACATAG

mRNA sequence

ATGTCGGCGACAAAACAACTAAGCAAGTCGCATGTCGACCGACTAGTTGAAATTGAAGAGCAGTTGCTATTCTTGAGGGACACACCTGACACGATGCGATTCCTCGAAGACCAAATGAAAAATGTCCAAGAGGCAGTGGGTAAAGTAAGGGCCTTGAATGCCCGACTCGATGGGTTACCAATACGAGAACTGACGTTGAGGGTTGACACCCTAGAAGATAAAGCTACACGTCCCAGTAGCTTCGAACATGGAGATAGCTCCACCGGCTCTGCCGCACACATAGAAGAACGTGTGGAAGAGCTAGATAATACACAAAAGACCATGATGAAGTTGTTCAACGATCTCACATAG

Coding sequence (CDS)

ATGTCGGCGACAAAACAACTAAGCAAGTCGCATGTCGACCGACTAGTTGAAATTGAAGAGCAGTTGCTATTCTTGAGGGACACACCTGACACGATGCGATTCCTCGAAGACCAAATGAAAAATGTCCAAGAGGCAGTGGGTAAAGTAAGGGCCTTGAATGCCCGACTCGATGGGTTACCAATACGAGAACTGACGTTGAGGGTTGACACCCTAGAAGATAAAGCTACACGTCCCAGTAGCTTCGAACATGGAGATAGCTCCACCGGCTCTGCCGCACACATAGAAGAACGTGTGGAAGAGCTAGATAATACACAAAAGACCATGATGAAGTTGTTCAACGATCTCACATAG

Protein sequence

MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLPIRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT

Homology

[Close]

BLAST of Tan0001301 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-30
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MSATKQLSKSHVDRLVEIEEQLL+LR+ PD++R LE ++    E  G++ A+NAR+DGLP
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+++ +RV+T E KATRP SFE GDSST     IE R+ EL+N+  TMM+LFN++T
Sbjct: 61  IQDIAMRVETXESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQLFNEMT 116

[Close]

BLAST of Tan0001301 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS TKQLSKSHVDRLVEIEEQLL+LR+ PD +R LE ++    E  G++ A+NAR+DGLP
Sbjct: 1   MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+++ +RV+TLE KATRP SFE GDSST     IE R+ EL+N+   MM+LFN++T
Sbjct: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMT 116

[Close]

BLAST of Tan0001301 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 63/116 (54.31%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS TKQL KSH+DRLVEIEE+LLFLR+ PD +R++E ++  +      +  +NAR+DGL 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           IREL LRV+TLEDK  R  + E G+SS+ S AH+EERVEE+D ++KT++++ ++LT
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISKKTIVQMVSELT 116

[Close]

BLAST of Tan0001301 vs. NCBI nr
Match: KAA0062476.1 (uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK27406.1 uncharacterized protein E5676_scaffold325G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-23
Identity = 57/116 (49.14%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS TKQL K   DRLVE++EQ+ +L +  D++ FL+ +++ + E    + A+ +RLDGLP
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+EL  RVDTLE K  R  ++EHGDSST   +HIEERV ELD++QK++M++ N ++
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVELDSSQKSIMEMINSMS 116

[Close]

BLAST of Tan0001301 vs. NCBI nr
Match: KAA0055407.1 (uncharacterized protein E6C27_scaffold80G002530 [Cucumis melo var. makuwa] >TYK22320.1 uncharacterized protein E5676_scaffold1428G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-22
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS+     K+  DRLVE+EEQ+L+L + PD++RFLE +++ + E    +  +  R++GL 
Sbjct: 1   MSSANPSGKAQRDRLVELEEQMLYLVEVPDSIRFLESRLEEIAEKNDMIDPVAGRVEGLS 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+EL  RVDTLE    R  S E GDSSTGS AHIEERV+ELDN+QKT++++ ND++
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDNSQKTLLEMINDMS 116

[Close]

BLAST of Tan0001301 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MSATKQLSKSHVDRLVEIEEQLL+LR+ PD++R LE ++    E  G++ A+NAR+DGLP
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+++ +RV+T E KATRP SFE GDSST     IE R+ EL+N+  TMM+LFN++T
Sbjct: 61  IQDIAMRVETXESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQLFNEMT 116

[Close]

BLAST of Tan0001301 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.5e-30
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS TKQLSKSHVDRLVEIEEQLL+LR+ PD +R LE ++    E  G++ A+NAR+DGLP
Sbjct: 1   MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+++ +RV+TLE KATRP SFE GDSST     IE R+ EL+N+   MM+LFN++T
Sbjct: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMT 116

[Close]

BLAST of Tan0001301 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.4e-27
Identity = 63/116 (54.31%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS TKQL KSH+DRLVEIEE+LLFLR+ PD +R++E ++  +      +  +NAR+DGL 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           IREL LRV+TLEDK  R  + E G+SS+ S AH+EERVEE+D ++KT++++ ++LT
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISKKTIVQMVSELT 116

[Close]

BLAST of Tan0001301 vs. ExPASy TrEMBL
Match: A0A5D3DUL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00940 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 57/116 (49.14%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS TKQL K   DRLVE++EQ+ +L +  D++ FL+ +++ + E    + A+ +RLDGLP
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+EL  RVDTLE K  R  ++EHGDSST   +HIEERV ELD++QK++M++ N ++
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVELDSSQKSIMEMINSMS 116

[Close]

BLAST of Tan0001301 vs. ExPASy TrEMBL
Match: A0A5A7ULF5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00300 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLFLRDTPDTMRFLEDQMKNVQEAVGKVRALNARLDGLP 60
           MS+     K+  DRLVE+EEQ+L+L + PD++RFLE +++ + E    +  +  R++GL 
Sbjct: 1   MSSANPSGKAQRDRLVELEEQMLYLVEVPDSIRFLESRLEEIAEKNDMIDPVAGRVEGLS 60

Query: 61  IRELTLRVDTLEDKATRPSSFEHGDSSTGSAAHIEERVEELDNTQKTMMKLFNDLT 117
           I+EL  RVDTLE    R  S E GDSSTGS AHIEERV+ELDN+QKT++++ ND++
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDNSQKTLLEMINDMS 116

The following BLAST results are available for this feature:

BLAST of Tan0001301 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154605.1	2.3e-30	61.21	uncharacterized protein LOC111021829 [Momordica charantia]	[more]
XP_022150099.1	1.1e-29	60.34	uncharacterized protein LOC111018360 [Momordica charantia]	[more]
XP_022155185.1	1.5e-26	54.31	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0062476.1	6.0e-23	49.14	uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0055407.1	2.3e-22	50.00	uncharacterized protein E6C27_scaffold80G002530 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of Tan0001301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DK29	1.1e-30	61.21	uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1D906	5.5e-30	60.34	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1	[more]
A0A6J1DLQ6	7.4e-27	54.31	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3DUL1	2.9e-23	49.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7ULF5	1.1e-22	50.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Tan0001301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001301.1	Tan0001301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding