Tan0001140 (gene) Snake gourd v1

Overview


Name	Tan0001140
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type E3 ubiquitin transferase
Location	LG07: 4085930 .. 4086826 (+)
RNA-Seq Expression	Tan0001140
Synteny	Tan0001140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCAATTCACTGAATTCCTTCCTTTCAGAGTTGAAGAGAGAGAGAGAGAGAGAGAATGCGGCCAACTCCTTTAGACGCCGACGACACCGTCCGCTTCCAGCCACCGCCATCGCCGCCGTGCCACGACCTCCGCGCCTGTACGTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATTATCCTCCTCTGCGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGCGGCGCCGATCATGATCCGTCCGATAGCCACCAGGAGGAGGAACTTCAGGACGAAACGAAGCCGACGCTGGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTTACGGCGGAGATGAAACCGAAGCTCGCCGGCGCGGAGGCGGAGTGCACGATTTGCTTGACTGACTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGCAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCACTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCCTCCGAGCGCGGAGGCGATGGTGGCGGCGACGGTGGCCCCTGAGATTAGATTAGTAAGACAGAAATTTCTCCCGATAGCCGCCGTCGTAGCTGTTCAATAGCAGTTCGAATTGAGCGTTTGCTTGTTTTTTTTTTTAATTATTATTATAAATTACAATTACTTCATCTGTGTTTTGCTCTGGAATTTTTTCGATAACTTCCGGAATTTACCAAATTCCAGTAATGCAATTCGGGTTTGGAAAATTAGAAAAATGATGGTAAATAGTTAATTTATGTACCTCTATTTATTCTCCAGTTTTATAAAACTAAATGATGTCTCTTTAGAT

mRNA sequence

CTGCAATTCACTGAATTCCTTCCTTTCAGAGTTGAAGAGAGAGAGAGAGAGAGAGAATGCGGCCAACTCCTTTAGACGCCGACGACACCGTCCGCTTCCAGCCACCGCCATCGCCGCCGTGCCACGACCTCCGCGCCTGTACGTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATTATCCTCCTCTGCGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGCGGCGCCGATCATGATCCGTCCGATAGCCACCAGGAGGAGGAACTTCAGGACGAAACGAAGCCGACGCTGGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTTACGGCGGAGATGAAACCGAAGCTCGCCGGCGCGGAGGCGGAGTGCACGATTTGCTTGACTGACTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGCAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCACTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCCTCCGAGCGCGGAGGCGATGGTGGCGGCGACGGTGGCCCCTGAGATTAGATTAGTAAGACAGAAATTTCTCCCGATAGCCGCCGTCGTAGCTGTTCAATAGCAGTTCGAATTGAGCGTTTGCTTGTTTTTTTTTTTAATTATTATTATAAATTACAATTACTTCATCTGTGTTTTGCTCTGGAATTTTTTCGATAACTTCCGGAATTTACCAAATTCCAGTAATGCAATTCGGGTTTGGAAAATTAGAAAAATGATGGTAAATAGTTAATTTATGTACCTCTATTTATTCTCCAGTTTTATAAAACTAAATGATGTCTCTTTAGAT

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCCGACGACACCGTCCGCTTCCAGCCACCGCCATCGCCGCCGTGCCACGACCTCCGCGCCTGTACGTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATTATCCTCCTCTGCGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGCGGCGCCGATCATGATCCGTCCGATAGCCACCAGGAGGAGGAACTTCAGGACGAAACGAAGCCGACGCTGGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTTACGGCGGAGATGAAACCGAAGCTCGCCGGCGCGGAGGCGGAGTGCACGATTTGCTTGACTGACTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGCAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCACTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCCTCCGAGCGCGGAGGCGATGGTGGCGGCGACGGTGGCCCCTGA

Protein sequence

MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDGGGDGGP

Homology

[Close]

BLAST of Tan0001140 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.9e-32
Identity = 71/146 (48.63%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSD 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR   + +  D
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETE-DD 76

Query: 79  SHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAI 138
              + E    + PT        P LV+++++  +LAGAEAEC ICL++F +GE I+VL  
Sbjct: 77  HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLEK 136

Query: 139 CKHGFHVQCIQTWLILHSSCPTCRRS 165
           C+HGFHV+CI  WL   SSCPTCR S
Sbjct: 137 CQHGFHVKCIHKWLSTRSSCPTCRTS 151

[Close]

BLAST of Tan0001140 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-23
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSDSHQEEELQDETKPTLV 94
           N    + +  +++  LLC LICAL +N+ +RC LR      P++   +    +  K    
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN-ANVAKGIKK 92

Query: 95  DKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLIL 154
             LK+ P   ++ E+K K      EC ICL DF EGE +RVL  C HGFHV+CI TWL+ 
Sbjct: 93  RALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLS 152

Query: 155 HSSCPTCRRSYLP-PSPSSSERGGD 179
           HSSCPTCR+S L   +P++  R GD
Sbjct: 153 HSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Tan0001140 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.4e-22
Identity = 61/144 (42.36%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR-----RGADHDPSDSHQEEELQDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR        D   + S+    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQC 154
             T + K  LK  P  ++ + +    A    EC ICL DF +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 172
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of Tan0001140 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.3e-21
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSDSHQEEELQDETKP 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC L R ++  PS++  +      T  
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCAL-RCSNLVPSEAGGDNYPVRLTNT 104

Query: 92  TLVDK-LKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQCIQT 151
            +  K LK    + ++ E+   L G + EC ICL++F   E +++L  C HGFHV+CI  
Sbjct: 105 GVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 163
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]

BLAST of Tan0001140 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.9e-20
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 33  YSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSDSHQEEELQDETKPT 92
           Y+   +F+AN  +++  LLC LI AL LN+ +RC +R G     S S     + D     
Sbjct: 24  YTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG--FGLSSSAAAGTVADRAGLK 83

Query: 93  LVDKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWL 152
             +  K   A   + E+K     A  EC ICL +F++GE +RVL  C H FH+ CI TWL
Sbjct: 84  KRELKKFPVAEYGSGEVKI----AATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 143

Query: 153 ILHSSCPTCRRSYLPPSPSSSE 175
           + HSSCP CR S +    + SE
Sbjct: 144 VSHSSCPNCRHSLIEVHVAGSE 159

[Close]

BLAST of Tan0001140 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 3.8e-88
Identity = 168/184 (91.30%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTV FQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRR--GADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEA 120
           NTAIRCFLRR   AD DPSDS Q EELQDETKPTLVDKLKMAPALVF+AE KPKLAGAEA
Sbjct: 61  NTAIRCFLRRRGSADDDPSDSRQ-EELQDETKPTLVDKLKMAPALVFSAETKPKLAGAEA 120

Query: 121 ECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGD 180
           ECTICLT+F EGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSP SS  GGD
Sbjct: 121 ECTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSGGD 180

Query: 181 GGGD 183
           G G+
Sbjct: 181 GDGN 183

[Close]

BLAST of Tan0001140 vs. NCBI nr
Match: XP_008437481.1 (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa] >TYK06025.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-87
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFL-RRGADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFL RRG   D S+  ++EELQ+ETKPTLV+KLKMAPALVF+AEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS  GGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

[Close]

BLAST of Tan0001140 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-86
Identity = 166/188 (88.30%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDTV FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRR--GADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAE 120
           LNTAIRCFLRR   AD +PSD+ Q EEL+DETKPTLVDKLKMAPALVF+AE+KPKLAGAE
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQ-EELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAE 120

Query: 121 AECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGG 180
           AECTICLT+FSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GG
Sbjct: 121 AECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGG 180

Query: 181 DGGGDGGP 186
           DG GDG P
Sbjct: 181 DGDGDGDP 187

[Close]

BLAST of Tan0001140 vs. NCBI nr
Match: KAG6605626.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035536.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-86
Identity = 163/182 (89.56%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTV  QPP SPPCHD R CTWRPYS+S+DFEANAAVVVI+LLCGLICALAL
Sbjct: 1   MRPTPLDADDTVALQPPQSPPCHDHRTCTWRPYSSSKDFEANAAVVVILLLCGLICALAL 60

Query: 61  NTAIRCFLRRGADHDPSDSHQEEELQDET-KPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFLRR ADHDPSDS QEEELQD T KPTLVDKLKMAPALVFTAEMK KLAGAEAE
Sbjct: 61  NTAIRCFLRRSADHDPSDSQQEEELQDGTAKPTLVDKLKMAPALVFTAEMKSKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVL  CKHGFHVQCIQ WLILHSSCPTCRRSYLPPSPSSSERGG  
Sbjct: 121 CTICLTEFSEGEEIRVLTNCKHGFHVQCIQKWLILHSSCPTCRRSYLPPSPSSSERGGRH 180

Query: 181 GG 182
           GG
Sbjct: 181 GG 182

[Close]

BLAST of Tan0001140 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 4.7e-86
Identity = 160/180 (88.89%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFL-RRGADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFL RRG   D S   ++EEL +ETKPTL+DKLKMAPALVF+AEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS  GGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

[Close]

BLAST of Tan0001140 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFL-RRGADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFL RRG   D S+  ++EELQ+ETKPTLV+KLKMAPALVF+AEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS  GGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

[Close]

BLAST of Tan0001140 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFL-RRGADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFL RRG   D S+  ++EELQ+ETKPTLV+KLKMAPALVF+AEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS  GGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

[Close]

BLAST of Tan0001140 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.3e-86
Identity = 160/180 (88.89%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFL-RRGADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFL RRG   D S   ++EEL +ETKPTL+DKLKMAPALVF+AEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS  GGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

[Close]

BLAST of Tan0001140 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.6e-86
Identity = 164/185 (88.65%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDTV FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRR--GADHDPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAE 120
           LNTAIRCFLRR   AD +PSD+ Q EEL+DETKPTLVDKLKMAPALVF+AE+KPKLAGAE
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQ-EELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAE 120

Query: 121 AECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGG 180
           AECTICLT+FSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GG
Sbjct: 121 AECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGG 180

Query: 181 DGGGD 183
           DG GD
Sbjct: 181 DGDGD 184

[Close]

BLAST of Tan0001140 vs. ExPASy TrEMBL
Match: A0A6J1H2J5 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459513 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 161/182 (88.46%), Postives = 166/182 (91.21%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTV  QPP SPPCHD   CTWRPYS+S+DFEANAAVVVI+LLCGLICALAL
Sbjct: 1   MRPTPLDADDTVALQPPQSPPCHDHHPCTWRPYSSSKDFEANAAVVVILLLCGLICALAL 60

Query: 61  NTAIRCFLRRGADHDPSDSHQEEELQDET-KPTLVDKLKMAPALVFTAEMKPKLAGAEAE 120
           NTAIRCFLRR A+HDPSDS QEEELQD T KPTLVDKLKMAPALVFTAEMK KLAGAEAE
Sbjct: 61  NTAIRCFLRRSANHDPSDSQQEEELQDGTAKPTLVDKLKMAPALVFTAEMKSKLAGAEAE 120

Query: 121 CTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSERGGDG 180
           CTICLT+FSEGEEIRVL  CKHGFHVQCIQ WLILHSSCPTCRRSYLPPSPSSSERGG  
Sbjct: 121 CTICLTEFSEGEEIRVLTNCKHGFHVQCIQKWLILHSSCPTCRRSYLPPSPSSSERGGRH 180

Query: 181 GG 182
           GG
Sbjct: 181 GG 182

[Close]

BLAST of Tan0001140 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-33
Identity = 71/146 (48.63%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSD 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR   + +  D
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETE-DD 76

Query: 79  SHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAI 138
              + E    + PT        P LV+++++  +LAGAEAEC ICL++F +GE I+VL  
Sbjct: 77  HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLEK 136

Query: 139 CKHGFHVQCIQTWLILHSSCPTCRRS 165
           C+HGFHV+CI  WL   SSCPTCR S
Sbjct: 137 CQHGFHVKCIHKWLSTRSSCPTCRTS 151

[Close]

BLAST of Tan0001140 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 7.8e-31
Identity = 73/157 (46.50%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 15  QPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADH 74
           QP  +  C    +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR    H
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRPVLQH 69

Query: 75  DPSDSHQEEELQDETKPTLVDKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIR 134
            P      E    +  PTLV     +P L         LAG EAEC ICL++F +G+ +R
Sbjct: 70  VPKPDPDLEATHPDAPPTLV----YSPGL--------NLAGNEAECIICLSEFQDGDTLR 129

Query: 135 VLAICKHGFHVQCIQTWL-ILHSSCPTCRRSYLPPSP 171
           VL  CKHGFHV CIQ WL   HSSCPTCR +     P
Sbjct: 130 VLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of Tan0001140 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSDSHQEEELQDETKPTLV 94
           N    + +  +++  LLC LICAL +N+ +RC LR      P++   +    +  K    
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN-ANVAKGIKK 92

Query: 95  DKLKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQCIQTWLIL 154
             LK+ P   ++ E+K K      EC ICL DF EGE +RVL  C HGFHV+CI TWL+ 
Sbjct: 93  RALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLS 152

Query: 155 HSSCPTCRRSYLP-PSPSSSERGGD 179
           HSSCPTCR+S L   +P++  R GD
Sbjct: 153 HSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Tan0001140 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-23
Identity = 61/144 (42.36%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR-----RGADHDPSDSHQEEELQDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR        D   + S+    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQC 154
             T + K  LK  P  ++ + +    A    EC ICL DF +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 172
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of Tan0001140 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 6.6e-22
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRGADHDPSDSHQEEELQDETKP 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC L R ++  PS++  +      T  
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCAL-RCSNLVPSEAGGDNYPVRLTNT 104

Query: 92  TLVDK-LKMAPALVFTAEMKPKLAGAEAECTICLTDFSEGEEIRVLAICKHGFHVQCIQT 151
            +  K LK    + ++ E+   L G + EC ICL++F   E +++L  C HGFHV+CI  
Sbjct: 105 GVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 163
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

The following BLAST results are available for this feature:

BLAST of Tan0001140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	6.9e-32	48.63	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	3.4e-23	41.38	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	6.4e-22	42.36	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	9.3e-21	40.91	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9LZV8	7.9e-20	38.73	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of Tan0001140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875287.1	3.8e-88	91.30	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_008437481.1	4.2e-87	90.00	PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H...	[more]
KAG7017072.1	2.7e-86	88.30	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6605626.1	2.7e-86	89.56	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_004145965.1	4.7e-86	88.89	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]

BLAST of Tan0001140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3S3	2.0e-87	90.00	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	2.0e-87	90.00	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]
A0A0A0KNJ7	2.3e-86	88.89	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A6J1ELF7	8.6e-86	88.65	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A6J1H2J5	2.5e-85	88.46	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459513...	[more]

BLAST of Tan0001140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	4.9e-33	48.63	RING/U-box superfamily protein	[more]
AT4G17245.1	7.8e-31	46.50	RING/U-box superfamily protein	[more]
AT5G05280.1	2.4e-24	41.38	RING/U-box superfamily protein	[more]
AT3G10910.1	4.6e-23	42.36	RING/U-box superfamily protein	[more]
AT1G49230.1	6.6e-22	40.91	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 120..161 e-value: 1.0E-5 score: 35.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 119..162 e-value: 2.9E-12 score: 46.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 120..162 score: 12.017182
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 76..167 e-value: 5.0E-20 score: 73.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..185
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 15..174
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 119..168
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 15..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001140.1	Tan0001140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity