Tan0001057 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCCGCGAGAACTAGTTGCCATACTGACAGCTTTTACCTCAACCCAACATCAATTACTTCTGATATTAGAGATATATATGAATGACCATAGAAGAATAGAATACCAATCACCCTTACTCAGGCATCAAATTAGGCAGCTAGCATGTTTCCGACTCATCCACGAGTCCGACCTAATATGTCGTGAGAGTACAAGGATGGACAGAAGATGTTTCGCCATTCTTTGTACCCTACTTAAGACATCTGGCAATTTAATAGGGACAAAAGTTGTAGACGTAGCGGAAATGGTAGCCATGTTCTTACACATCATAGCACATGATGCTAAAAATCGAATGATTCGTAGACAATTTGTTAGATCTGGTGAGACCGTTTCAAGACATTTTAGATCCATCCTGAATGCACTTTTGCAACTACATGATGTGCTATTGAAGAAACCAGAACCCATCACTAATTCCTCAACGGATGGGAAATGGAGATGGTTTGAGGTACAAATCATTTCTAAATCCAATAAGTGTGATGATTTGAGGTTCTTTATGAGTATCTAAGCCAACAAATGAATCCATTTATTATGTGGACGCAGAAATGTCTAGGTGCATTAGATGGTACGTACATCAAAGTCAATGTAAGTGCCACTGATCGACCAAGGTATAAGACAAGGAAAGGTGGGGTTGCAACTAACGTACTTGCTATATGTGATACTGTTGGGGAATTCGTATTCGTCTTACCTGGGTGGGAAGGGTCGGCACCTGATTCTCAGGTGCTTAGGGATGCAATATCACGACCAAACGGATTGAAAGTTCCTAAGGGTAATTGAGACATTTCTTACTTAATCTTATGAATATTAAAGACAATGGATTAAACGGTTACATGTTCTACAGGATATTATTATCTATATGATGCTGGGTACCCTAATGTAGAGGGTTCTTGGCACCTTATAGAGGTGAACATTACCATTTATCTGAATAGCGTGAAGGCAATCCACCGACTACACCAAGAGAATTTTTTAACATGAAACATTATTCTGCAAGAAATGTGATTGAGAGAGCGTTTGGACTGCTAAAAGGTAGATGAGTCATTCTTCGAGGAAAATCCAACTATCCTGTACAAATTCAATGTCGCACTATCACGACGTGTTGCATGCTTCATAACCTTATTAATCGGGAGATGAGAGAAATTGATATGAACGATGAATTAGATGAAGTTGACTCAAGTACAACTACGCATGGGGGAGACCACATCAATTACATTGAGACCTCTAATGAATGGAGCCAGTGGAGAGATGATTTGGCCCAACAAATGTTTTCCGATTGGGAGATGCGTAATAATTAATGTGTTAATTTATTTTGTTAGAACTTTTATCCTGTACTTATCTATATAATTGAATGGAATGTTGTTTTGGATTTCTCAATCTTGAACCATAATTAGGTATATTACGATTTTTATTTCATCAACCAAACAAACAATTATGTTATGTTCTTTATGTAGCCTATAATGATGTGCGTATGTACGCAACAGAATGTTAGGTACATCGAGAGCTCCTAAGCACTCGTGGACTAAGCATGATGATGCGAAATTGGTGGAGTGTCTTTTGTCATTAGCTCAATCTGGTGGTTGGAGATCGAACAATGACACCTTTCGCCCTGGGTACCTGATGAAACTCCAACACATGATGGTGGAGAGGATACCGGGCACTCCAATTCAATCATCCACCATAGATTGCAGGATACGAACTTTAAAAAAACAGTATCGTAAGATTGCAGAGATGCTAGGGACAGGATGCAGTGGTTTCGGTTGGAACGATGAATTCAAGTGTGTGGAGGTGGAGAAGGAGACGTTCGATGGTTGGGTAAAGGTAACGTTGAATATTTTACTTATCATATATAATTATATAAGTGACATTCCATAACATATTTTTTTACTTTCATTCAGGCTCACCCGGGTGCAAAGGGGTTGCGCAACAAGCCATTTCCCCATTTTGATGATTTAGCCATTGTCTTTGGTAAAGATCGAGCTACAGGTGCAACTGCGGAAACTCCTACAGATATGGCATCGAATGTAGGAAACCACATGGACGAAGATATTAACTTGGACGATTCTCAAGAATACTATGTGCCAATACCACCATTTTCAACTCAAGGAATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACAGTAGGTGCTTCTACACCTAAAGGTAGTAAAAGGAAGCGCTCCACTTATCAATCTGAGATGGTTGTTATGGTACGAGATGCTATGGATGTGAATGCATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCATGCGACGGAGGTAGAAGTACGGTCACAAATTGTGGACCACATGTATAGGATCCCAGAGTTGGATATTTGGGCTAAAGCGCAAGTGATGAACATCCTCTTCCGTGGTGCCCAAGCATCAGAAAGTTTCTTATCTGTGCCTCCAGAGTTGCAGCTGGAATATTGTCAGATCTTGATCGAGAAAAACACCTGA ATGGACCCGCGAGAACTAGTTGCCATACTGACAGCTTTTACCTCAACCCAACATCAATTACTTCTGATATTAGAGATATATATGAATGACCATAGAAGAATAGAATACCAATCACCCTTACTCAGGCATCAAATTAGGCAGCTAGCATGTTTCCGACTCATCCACGAGTCCGACCTAATATGTCGTGAGAGTACAAGGATGGACAGAAGATGTTTCGCCATTCTTTGTACCCTACTTAAGACATCTGGCAATTTAATAGGGACAAAAGTTGTAGACGTAGCGGAAATGGTAGCCATGTTCTTACACATCATAGCACATGATGCTAAAAATCGAATGATTCGTAGACAATTTGTTAGATCTGGTGAGACCGTTTCAAGACATTTTAGATCCATCCTGAATGCACTTTTGCAACTACATGATGTGCTATTGAAGAAACCAGAACCCATCACTAATTCCTCAACGGATGGGAAATGGAGATGGTTTGAGGTACAAATCATTTCTAAATCCAATAAAATGTTAGGTACATCGAGAGCTCCTAAGCACTCGTGGACTAAGCATGATGATGCGAAATTGGTGGAGTGTCTTTTGTCATTAGCTCAATCTGGTGGTTGGAGATCGAACAATGACACCTTTCGCCCTGGGTACCTGATGAAACTCCAACACATGATGGTGGAGAGGATACCGGGCACTCCAATTCAATCATCCACCATAGATTGCAGGATACGAACTTTAAAAAAACAGTATCGTAAGATTGCAGAGATGCTAGGGACAGGATGCAGTGGTTTCGGTTGGAACGATGAATTCAAGTGTGTGGAGGTGGAGAAGGAGACGTTCGATGGTTGGGTAAAGGCTCACCCGGGTGCAAAGGGGTTGCGCAACAAGCCATTTCCCCATTTTGATGATTTAGCCATTGTCTTTGGTAAAGATCGAGCTACAGGTGCAACTGCGGAAACTCCTACAGATATGGCATCGAATGTAGGAAACCACATGGACGAAGATATTAACTTGGACGATTCTCAAGAATACTATGTGCCAATACCACCATTTTCAACTCAAGGAATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACAGTAGGTGCTTCTACACCTAAAGGTAGTAAAAGGAAGCGCTCCACTTATCAATCTGAGATGGTTGTTATGGTACGAGATGCTATGGATGTGAATGCATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCATGCGACGGAGGTAGAAGTACGGTCACAAATTGTGGACCACATGTATAGGATCCCAGAGTTGGATATTTGGGCTAAAGCGCAAGTGATGAACATCCTCTTCCGTGGTGCCCAAGCATCAGAAAGTTTCTTATCTGTGCCTCCAGAGTTGCAGCTGGAATATTGTCAGATCTTGATCGAGAAAAACACCTGA ATGGACCCGCGAGAACTAGTTGCCATACTGACAGCTTTTACCTCAACCCAACATCAATTACTTCTGATATTAGAGATATATATGAATGACCATAGAAGAATAGAATACCAATCACCCTTACTCAGGCATCAAATTAGGCAGCTAGCATGTTTCCGACTCATCCACGAGTCCGACCTAATATGTCGTGAGAGTACAAGGATGGACAGAAGATGTTTCGCCATTCTTTGTACCCTACTTAAGACATCTGGCAATTTAATAGGGACAAAAGTTGTAGACGTAGCGGAAATGGTAGCCATGTTCTTACACATCATAGCACATGATGCTAAAAATCGAATGATTCGTAGACAATTTGTTAGATCTGGTGAGACCGTTTCAAGACATTTTAGATCCATCCTGAATGCACTTTTGCAACTACATGATGTGCTATTGAAGAAACCAGAACCCATCACTAATTCCTCAACGGATGGGAAATGGAGATGGTTTGAGGTACAAATCATTTCTAAATCCAATAAAATGTTAGGTACATCGAGAGCTCCTAAGCACTCGTGGACTAAGCATGATGATGCGAAATTGGTGGAGTGTCTTTTGTCATTAGCTCAATCTGGTGGTTGGAGATCGAACAATGACACCTTTCGCCCTGGGTACCTGATGAAACTCCAACACATGATGGTGGAGAGGATACCGGGCACTCCAATTCAATCATCCACCATAGATTGCAGGATACGAACTTTAAAAAAACAGTATCGTAAGATTGCAGAGATGCTAGGGACAGGATGCAGTGGTTTCGGTTGGAACGATGAATTCAAGTGTGTGGAGGTGGAGAAGGAGACGTTCGATGGTTGGGTAAAGGCTCACCCGGGTGCAAAGGGGTTGCGCAACAAGCCATTTCCCCATTTTGATGATTTAGCCATTGTCTTTGGTAAAGATCGAGCTACAGGTGCAACTGCGGAAACTCCTACAGATATGGCATCGAATGTAGGAAACCACATGGACGAAGATATTAACTTGGACGATTCTCAAGAATACTATGTGCCAATACCACCATTTTCAACTCAAGGAATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACAGTAGGTGCTTCTACACCTAAAGGTAGTAAAAGGAAGCGCTCCACTTATCAATCTGAGATGGTTGTTATGGTACGAGATGCTATGGATGTGAATGCATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCATGCGACGGAGGTAGAAGTACGGTCACAAATTGTGGACCACATGTATAGGATCCCAGAGTTGGATATTTGGGCTAAAGCGCAAGTGATGAACATCCTCTTCCGTGGTGCCCAAGCATCAGAAAGTTTCTTATCTGTGCCTCCAGAGTTGCAGCTGGAATATTGTCAGATCTTGATCGAGAAAAACACCTGA MDPRELVAILTAFTSTQHQLLLILEIYMNDHRRIEYQSPLLRHQIRQLACFRLIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGTKVVDVAEMVAMFLHIIAHDAKNRMIRRQFVRSGETVSRHFRSILNALLQLHDVLLKKPEPITNSSTDGKWRWFEVQIISKSNKMLGTSRAPKHSWTKHDDAKLVECLLSLAQSGGWRSNNDTFRPGYLMKLQHMMVERIPGTPIQSSTIDCRIRTLKKQYRKIAEMLGTGCSGFGWNDEFKCVEVEKETFDGWVKAHPGAKGLRNKPFPHFDDLAIVFGKDRATGATAETPTDMASNVGNHMDEDINLDDSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTPKGSKRKRSTYQSEMVVMVRDAMDVNASHLKMIAEWPKEKHATEVEVRSQIVDHMYRIPELDIWAKAQVMNILFRGAQASESFLSVPPELQLEYCQILIEKNT Homology
BLAST of Tan0001057 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 383.3 bits (983), Expect = 3.2e-102 Identity = 239/656 (36.43%), Postives = 321/656 (48.93%), Query Frame = 0
BLAST of Tan0001057 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 330.1 bits (845), Expect = 3.2e-86 Identity = 217/686 (31.63%), Postives = 301/686 (43.88%), Query Frame = 0
BLAST of Tan0001057 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 314.7 bits (805), Expect = 1.4e-81 Identity = 156/306 (50.98%), Postives = 209/306 (68.30%), Query Frame = 0
BLAST of Tan0001057 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 303.9 bits (777), Expect = 2.4e-78 Identity = 176/440 (40.00%), Postives = 244/440 (55.45%), Query Frame = 0
BLAST of Tan0001057 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]) HSP 1 Score: 293.5 bits (750), Expect = 3.3e-75 Identity = 150/342 (43.86%), Postives = 218/342 (63.74%), Query Frame = 0
BLAST of Tan0001057 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 1.5e-102 Identity = 239/656 (36.43%), Postives = 321/656 (48.93%), Query Frame = 0
BLAST of Tan0001057 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 1.5e-86 Identity = 217/686 (31.63%), Postives = 301/686 (43.88%), Query Frame = 0
BLAST of Tan0001057 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 6.7e-82 Identity = 156/306 (50.98%), Postives = 209/306 (68.30%), Query Frame = 0
BLAST of Tan0001057 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 6.7e-82 Identity = 156/306 (50.98%), Postives = 209/306 (68.30%), Query Frame = 0
BLAST of Tan0001057 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 1.2e-78 Identity = 176/440 (40.00%), Postives = 244/440 (55.45%), Query Frame = 0
BLAST of Tan0001057 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 5.5e-12 Identity = 37/104 (35.58%), Postives = 62/104 (59.62%), Query Frame = 0
BLAST of Tan0001057 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 7.5e-09 Identity = 58/219 (26.48%), Postives = 94/219 (42.92%), Query Frame = 0
BLAST of Tan0001057 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 49.3 bits (116), Expect = 1.0e-05 Identity = 26/94 (27.66%), Postives = 45/94 (47.87%), Query Frame = 0
BLAST of Tan0001057 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 2.2e-05 Identity = 22/85 (25.88%), Postives = 43/85 (50.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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