Tan0000782 (gene) Snake gourd v1

Overview


Name	Tan0000782
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	josephin-like protein
Location	LG03: 64412031 .. 64412559 (-)
RNA-Seq Expression	Tan0000782
Synteny	Tan0000782

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAGAATGTCAAAATTAAGCTCAAGCAGAAGAGTGAGTTTCAGCTCAGATCTCCCAAGAAACAGGAAAAGGGTAATCGCCGTCTTCTGGGTTTTCCGGCTGCCGAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCCTCGGTGCCAAAGTGGCCAAAGTTCTACGCTATGTCTCTTTCAAAAAGAGATCACAATCTTCTTCTTCTTCTAAAAATGCCTCAGCTGGTTCTAATTTCAACAGATCCCATTCGGTTTCGGACTCCATGGAAGAACCTCACAGAGCTGAAGCTGTCAAAGATTGCATCCAGTTCTTCAATTCTTCTTCTTCTTCTTCAGCTGTTTGATTCATTTCTACTTTTCTTTTTTTTTTTTCCTCTGCATTTACCAGTCATGTTCTTCGTAACTGTTAAGGTAAATTTCTTGGTTCTTCTTAGTTTGTTTTATAATGCTTTTCTTTCTTTTCTTCTTTCTATTTTTTTTTCTTTTTTTTTAAATGGGTTATGTTTATTTAAC

mRNA sequence

AAAAAAAAAAAAAGAATGTCAAAATTAAGCTCAAGCAGAAGAGTGAGTTTCAGCTCAGATCTCCCAAGAAACAGGAAAAGGGTAATCGCCGTCTTCTGGGTTTTCCGGCTGCCGAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCCTCGGTGCCAAAGTGGCCAAAGTTCTACGCTATGTCTCTTTCAAAAAGAGATCACAATCTTCTTCTTCTTCTAAAAATGCCTCAGCTGGTTCTAATTTCAACAGATCCCATTCGGTTTCGGACTCCATGGAAGAACCTCACAGAGCTGAAGCTGTCAAAGATTGCATCCAGTTCTTCAATTCTTCTTCTTCTTCTTCAGCTGTTTGATTCATTTCTACTTTTCTTTTTTTTTTTTCCTCTGCATTTACCAGTCATGTTCTTCGTAACTGTTAAGGTAAATTTCTTGGTTCTTCTTAGTTTGTTTTATAATGCTTTTCTTTCTTTTCTTCTTTCTATTTTTTTTTCTTTTTTTTTAAATGGGTTATGTTTATTTAAC

Coding sequence (CDS)

ATGTCAAAATTAAGCTCAAGCAGAAGAGTGAGTTTCAGCTCAGATCTCCCAAGAAACAGGAAAAGGGTAATCGCCGTCTTCTGGGTTTTCCGGCTGCCGAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCCTCGGTGCCAAAGTGGCCAAAGTTCTACGCTATGTCTCTTTCAAAAAGAGATCACAATCTTCTTCTTCTTCTAAAAATGCCTCAGCTGGTTCTAATTTCAACAGATCCCATTCGGTTTCGGACTCCATGGAAGAACCTCACAGAGCTGAAGCTGTCAAAGATTGCATCCAGTTCTTCAATTCTTCTTCTTCTTCTTCAGCTGTTTGA

Protein sequence

MSKLSSSRRVSFSSDLPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLGAKVAKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSSSSSSAV

Homology

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BLAST of Tan0000782 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 88/125 (70.40%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 2   SKLSSSRRVSFSSD--------------LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRL 61
           +KLSSSRRVSFSSD               PRNRKR+I VFWVFRLPKSGR  P SFLRR+
Sbjct: 3   TKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRI 62

Query: 62  GAKVAKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNS 113
           GAKV KVLRYVS +KRS S +SS +  +GSNFNRSHSVS+SMEE HRAEAVKDCI FFNS
Sbjct: 63  GAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 122

[Close]

BLAST of Tan0000782 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-34
Identity = 90/120 (75.00%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 1   MSKLSSSRRVSFSSD--------LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLGAKVA 60
           MSK+ SSR VS  SD        L RNRKRVI V WVFRLPKSGRFSPESFLRR+GAKVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTTLQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSSSSSS 113
           KV+RYVS KKRS+    SK ASA +NFNRSHSVSDSMEE HRAEAVKDCI FFNSSSSS+
Sbjct: 61  KVVRYVSLKKRSE---CSKKASAATNFNRSHSVSDSMEESHRAEAVKDCIHFFNSSSSSA 117

[Close]

BLAST of Tan0000782 vs. NCBI nr
Match: KAG6595400.1 (hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027410.1 hypothetical protein SDJN02_11422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 4.3e-34
Identity = 91/122 (74.59%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 1   MSKLSSSRRVSFSSD--------LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLGAKVA 60
           MSK+ SSR VS  SD        L RNRKRVI V WVFRLPKSGRFSPESFLRR+GAKVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSSSSSS 115
           KVLR VS KKRS+    SK ASA +NFNRSHSVSDSMEE HRAEAV+DCI FFNSSSSSS
Sbjct: 61  KVLRAVSLKKRSE---CSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSSS 119

[Close]

BLAST of Tan0000782 vs. NCBI nr
Match: KGN54361.1 (hypothetical protein Csa_017994 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 7.4e-34
Identity = 92/121 (76.03%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 2   SKLSSSRRVSFSSD-----LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLGAKVAKVLR 61
           +KLSS RRVSFSSD       R RKR I VFWVFRLPKS RFSPE FLRRLGAK+AKVLR
Sbjct: 3   TKLSSGRRVSFSSDQAAAAKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAKVLR 62

Query: 62  YVSFKKRSQS---SSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSSSSSSA 115
           YVS +KRS S   SSS KN +  S FNRSHSVSDSMEE HRAEAVKDCIQFFNSS+SSSA
Sbjct: 63  YVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNSSSA 122

[Close]

BLAST of Tan0000782 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 2   SKLSSSRRVSFSSD-------------LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLG 61
           +KLSSSRRVSFSSD              PRNRKR+I VFWVFRLPKSGR  P SFLRR+G
Sbjct: 3   TKLSSSRRVSFSSDQGAAAASAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRIG 62

Query: 62  AKVAKVLRYVSFKKRS------QSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCI 113
           AKV KVLRYVS +KRS       SSSSS +  +GSNFNRSHSVS+SMEE HRAEAVKDCI
Sbjct: 63  AKVVKVLRYVSLRKRSASPASCSSSSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCI 122

[Close]

BLAST of Tan0000782 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 88/125 (70.40%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 2   SKLSSSRRVSFSSD--------------LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRL 61
           +KLSSSRRVSFSSD               PRNRKR+I VFWVFRLPKSGR  P SFLRR+
Sbjct: 3   TKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRI 62

Query: 62  GAKVAKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNS 113
           GAKV KVLRYVS +KRS S +SS +  +GSNFNRSHSVS+SMEE HRAEAVKDCI FFNS
Sbjct: 63  GAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 122

[Close]

BLAST of Tan0000782 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 92/121 (76.03%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 2   SKLSSSRRVSFSSD-----LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLGAKVAKVLR 61
           +KLSS RRVSFSSD       R RKR I VFWVFRLPKS RFSPE FLRRLGAK+AKVLR
Sbjct: 3   TKLSSGRRVSFSSDQAAAAKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAKVLR 62

Query: 62  YVSFKKRSQS---SSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSSSSSSA 115
           YVS +KRS S   SSS KN +  S FNRSHSVSDSMEE HRAEAVKDCIQFFNSS+SSSA
Sbjct: 63  YVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNSSSA 122

[Close]

BLAST of Tan0000782 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.8e-33
Identity = 87/125 (69.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 2   SKLSSSRRVSFSSD------------LPRNRKRVIAVFWVFRLPKSGRFSPESFLRRLGA 61
           +KLSSSRRVSFSSD             PRNRKR+I VFWVF+LPKSGR  P SFLRR+GA
Sbjct: 3   TKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRIGA 62

Query: 62  KVAKVLRYVSFKKRS---QSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFN 112
           KV KVLRYVS +KRS    S SSS +  +GSNFNRSHSVS+SMEE HRAEAVKDCI FFN
Sbjct: 63  KVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFN 122

[Close]

BLAST of Tan0000782 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 6   SSRRVSFSSDLPR-----------------NRKRVIAVFWVFRLPKSGRFSPESFLRRLG 65
           +S+RVSFS D+                   NR+RV+A  + FRL +S RFSP   LRRLG
Sbjct: 5   TSKRVSFSPDVNERPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRRLG 64

Query: 66  AKVAKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSS 113
           AKVA+ LR+VS ++   +S+S K +S+ SN  RS S+++S++  HRAEA++DCI+F NSS
Sbjct: 65  AKVARALRFVSMRR---NSNSHKVSSSSSNLARSRSLAESIDS-HRAEAIEDCIEFLNSS 124

[Close]

BLAST of Tan0000782 vs. ExPASy TrEMBL
Match: A0A6J1AQZ4 (josephin-like protein OS=Herrania umbratica OX=108875 GN=LOC110420321 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 6   SSRRVSFSSDLPR-----------------NRKRVIAVFWVFRLPKSGRFSPESFLRRLG 65
           +S+RVSFS D+                    R+RV+A  + FRL +S RFSP   LRRLG
Sbjct: 5   TSKRVSFSPDVNERPTILLKHGGSTCRTRGKRRRVVAGIFTFRLVRSSRFSPARLLRRLG 64

Query: 66  AKVAKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSS 113
           AKVA+ LR+VS     ++S+S K +S+ SN  RS S+++S++  HRAEA++DCI+F NSS
Sbjct: 65  AKVARALRFVSM---GRNSNSHKVSSSSSNLARSRSLAESIDS-HRAEAIEDCIEFLNSS 124

[Close]

BLAST of Tan0000782 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 6   SSRRVSFSSDLPRN--------------RKRVIAVFWVFRLPKSGRFSPESFLRRLGAKV 65
           +S+RV FS D   N              R+RV+   + F    S   + +  LR +G +V
Sbjct: 5   ASKRVRFSPDPEANDELIFPTHSSSRHGRRRVVVGIFSFSFSDSPA-TTKRLLRSIGDRV 64

Query: 66  AKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSSSSS 113
            K  RY+SF + +  ++ S +++  S+     S S +  E HRAEA++DCI+F NS SS 
Sbjct: 65  GKTFRYISFGRMNTKTTPSSSSNVSSSLYLMKSKSLNGSESHRAEAIEDCIEFLNSCSSL 124

[Close]

BLAST of Tan0000782 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 19  NRKRVIAV-FWVFRLPKSGRFSPESFLRRLGAKVAKVLRYVSFKKRSQS----------S 78
           +R+RV+ V    F L  S   +    ++R+GA+ AK LR++SF++ +            S
Sbjct: 35  SRRRVVLVGILSFGLRSSP--AARKLIQRIGARFAKTLRFISFRRNTTDRRKTSSFLLPS 94

Query: 79  SSSKNASAGSNFNRSHSVSDSMEEPHRAEAVKDCIQFFNSS 109
           SSS ++S+     RS SV+++  E HRAEA++DCI+F NSS
Sbjct: 95  SSSSSSSSAIYMKRSKSVNET--ESHRAEAIEDCIEFLNSS 131

[Close]

BLAST of Tan0000782 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-05
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 31  RLPKSGRFSPESFLRRLGAKVAKVLRYVSFKKRSQSSSSSKNASAGSNFNRSHSVSDSME 90
           RLP+    +    ++ LG K AK LR V  +K+ +S  S  ++ +G +      +     
Sbjct: 44  RLPRKTEVTAAKLIKHLGCKFAKGLRLVVMRKKKRSPPSKVSSFSGRS---QPPIIPINN 103

Query: 91  EPHRAEAVKDCIQFFNSSSS 111
           + HR+EA++DCIQF NSSSS
Sbjct: 104 DSHRSEAIEDCIQFINSSSS 120

The following BLAST results are available for this feature:

BLAST of Tan0000782 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000782 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950374.1	2.0e-34	70.40	josephin-like protein [Cucurbita moschata]	[more]
XP_023518083.1	3.3e-34	75.00	uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo]	[more]
KAG6595400.1	4.3e-34	74.59	hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54361.1	7.4e-34	76.03	hypothetical protein Csa_017994 [Cucumis sativus]	[more]
KAG6603596.1	1.3e-33	69.23	hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0000782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFL9	9.4e-35	70.40	josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1	[more]
A0A0A0L2K7	3.6e-34	76.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1	[more]
A0A6J1IJN3	8.8e-33	69.60	uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703...	[more]
A0A061EQH2	1.1e-14	46.77	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1	[more]
A0A6J1AQZ4	1.2e-13	45.97	josephin-like protein OS=Herrania umbratica OX=108875 GN=LOC110420321 PE=4 SV=1	[more]

BLAST of Tan0000782 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01225.1	2.2e-07	33.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G09032.1	4.8e-07	37.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G07300.1	2.6e-05	36.25	josephin protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..93
None	No IPR available	PANTHER	PTHR34355:SF1	JOSEPHIN-LIKE PROTEIN	coord: 15..112
None	No IPR available	PANTHER	PTHR34355	JOSEPHIN-LIKE PROTEIN	coord: 15..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000782.1	Tan0000782.1	mRNA