Tan0000526 (gene) Snake gourd v1

Overview


Name	Tan0000526
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	thylakoid lumenal 15 kDa protein 1, chloroplastic
Location	LG11: 1739251 .. 1741635 (+)
RNA-Seq Expression	Tan0000526
Synteny	Tan0000526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGCTCAACGCCTCATTATGTTCTTCTACTTCCAGAATTCCTCCCAGACCTCACCTTCCTCTTCCTCTTCCTCTTCCTCCCTCCATTTCTTCTGCCTTTCCTAATCCTCAGCCTCAGGTAAGTTCCTAATCCTCACTCAATTTCTTCTCTCAAATGCTATGATTTCAACCAAAAAAAATTAAGGTACTGAAGCACCAAGTGGAAGCTACTCGGAATTTGGTTCTTTCCATTCGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGCTTTCCGCCTCTTTGTTCCTCGCCGATCCTGCGCTTGCTTTTAAGGTTCATTCCCCCCTGAAATGAAATTATTAATCTGCTTCAGTTTGATCATTGATTGATTTTTTTATTTTTTTTTTGCTGAACGGATTCAATTTCGTAATTAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGGCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACGTTAATCAAACAAGATTTCAAAACGGTTTCTCCCTTTTCAAACAAATCCACTATTTCTGATGTTGTACTATAGTAATATGTGTGTTTGTGACACCTGGTTTTAATTATGTTTCTTTTTTCACCAGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGCGCTAGCTTCTTTGATGCTGATTTAACAGGTTCGTTGTTTCAGTGTTTTTAACTAATTTTCTGAACTGCCAAGTCTTTTGAGGATCTTCTCTTTTGACATGGATAACAAAATCCAATCAAACCTCAGTTCAATTGTTTCTTTCTTTGCCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGACTTTTCTCTGGCCAATGTTACAAAGGTGAGATGTATGCAGACTTCATATATTTTTGTTAACAATCTCATATTTAGTTGATTTCCATCTCATTCTTGAATGTCCAAAAATTTGATCAAGTCAAGAGAAATATGATGGGAAAATACTCGGCAAAAATGATGGATGTGATGAACTGTGTATGCAGTGAAACCTGAGATTTTCCATTCAAGTTTTGGTTCATTTTGTGCTTAGATATTAGAAGCCACTGAAATTATAATCTTTATCCTTAATGGTTTCTTTTTCTGCTTTGGGCAGGCAAATTTAAGCAATGCCAACTTAGAAGGAGCGCTTGCTACAGGAAATACTTCTTTTCGTGGATCAACAATAAATGGAGCTGGTATGTAAAGCCAACATTTGTGCAGCTTGTAGGATTTCATTGGGGATCCCCTCTCCCAAATTGTTTTAGATAATGAAAAACAGTAATGTAGGTTGCTATTCCAACCTTTCTAGTTTTCTTAAGTTTGAAATTCCTAGCTTTAGTCGCTAGTTAATTGGCATGTTTCACAGTCTATACTCTGATCAGTCATTTTTGTTAGAGATGCACTTGGAGGTAAAAGAGGTGAAGTAGGAAATTGTAATTGAAGTAACAATGGATATGATTTCCTTGGAGACATTATGAAAACATGACTAAAGAGTTGTAGTCTGTCGAAACTCATGATGAAACACTCATGTTTAATTTATCTTATGATGTCAGACTTCACAGACGTGCCTTTGAGAGAGGATCAGCGGGAGTACCTTTGCAAAGTTGCAGATGGGTAAACAAAAATTTCCTCTGTTTTTTTTTTCTATGTTGACTGAAAATGATTCATGATAAATAAAGCTTAAAAGTAGTTTAAAAAACACTTTTGGTTCCTAAACTTTCATAAAAGTAACAATTTAGTTTTTGAATTTTAGTTTCTAATGATTTATTTAGTCCTTAAACTTACCGAAAGGGTTCGTAGCTTGTTGTCTTTTTTGGTTGGCTAACATTATGCCATTCCTATACGTCTTAGGTTTGAATCCCTAAACGGTATATTTCTCCCCTCTTTATAGGGGGTTCTGTCTCCCCTCTATGTGGGGAGAAATTATTTGATGAGGCCACCAAAATGTGACCGACAATTTTTTACCGTCGGATTGAGAGAGAGAAGTATTTCGACTTTATATTCAATGATTATTAGGGGGCATGAAAATTATTAGATCTACATCCATAGGTGAGATAGCCAAGTTGTGGCGGCCTCATTAAATAATTTGTCCTATGTGGGAGTGTTGTTTGGTGGTCTCCCCTCTTCTATATTGAGTATTTAATGCTAAATACAAACTTTAGCACGTAACAATTTGAAAATATAGGAACTAGACTGTTACAAACTAACGTTTATGGACTATATTGTTACTCCCATGAAAGTTTAGGACCAAGGTTTTTTCTAACCATAAAACTAATAGACTTAGTCCTTTCTGTTTACAGGGTGAACCCAACAACTGGAAATGCTACCCGGGAGACCTTGCTCTGCAATTGA

mRNA sequence

ATGGCTTTGCTCAACGCCTCATTATGTTCTTCTACTTCCAGAATTCCTCCCAGACCTCACCTTCCTCTTCCTCTTCCTCTTCCTCCCTCCATTTCTTCTGCCTTTCCTAATCCTCAGCCTCAGGTACTGAAGCACCAAGTGGAAGCTACTCGGAATTTGGTTCTTTCCATTCGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGCTTTCCGCCTCTTTGTTCCTCGCCGATCCTGCGCTTGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGGCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACGTTAATCAAACAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGCGCTAGCTTCTTTGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGACTTTTCTCTGGCCAATGTTACAAAGGCAAATTTAAGCAATGCCAACTTAGAAGGAGCGCTTGCTACAGGAAATACTTCTTTTCGTGGATCAACAATAAATGGAGCTGACTTCACAGACGTGCCTTTGAGAGAGGATCAGCGGGAGTACCTTTGCAAAGTTGCAGATGGGGTGAACCCAACAACTGGAAATGCTACCCGGGAGACCTTGCTCTGCAATTGA

Coding sequence (CDS)

ATGGCTTTGCTCAACGCCTCATTATGTTCTTCTACTTCCAGAATTCCTCCCAGACCTCACCTTCCTCTTCCTCTTCCTCTTCCTCCCTCCATTTCTTCTGCCTTTCCTAATCCTCAGCCTCAGGTACTGAAGCACCAAGTGGAAGCTACTCGGAATTTGGTTCTTTCCATTCGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGCTTTCCGCCTCTTTGTTCCTCGCCGATCCTGCGCTTGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGGCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACGTTAATCAAACAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGCGCTAGCTTCTTTGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGACTTTTCTCTGGCCAATGTTACAAAGGCAAATTTAAGCAATGCCAACTTAGAAGGAGCGCTTGCTACAGGAAATACTTCTTTTCGTGGATCAACAATAAATGGAGCTGACTTCACAGACGTGCCTTTGAGAGAGGATCAGCGGGAGTACCTTTGCAAAGTTGCAGATGGGGTGAACCCAACAACTGGAAATGCTACCCGGGAGACCTTGCTCTGCAATTGA

Protein sequence

MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRESASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN

Homology

[Close]

BLAST of Tan0000526 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-76
Identity = 146/175 (83.43%), Postives = 158/175 (90.29%), Query Frame = 0


Query: 51  RNLVLSIRESASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLI 110
           R++V S+ E  SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI
Sbjct: 50  RSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLI 109

Query: 111 KQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLE 170
           +QDFKTSILRQANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLE
Sbjct: 110 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169

Query: 171 GALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           GA  TGNTSF+GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLCN
Sbjct: 170 GATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Tan0000526 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-14
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 99  LTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLAN 158
           L G+DFSGK+L    F  + L  +NF  A L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 159 VTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 218
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 219 RETLLC 225
           RE+L C
Sbjct: 174 RESLGC 178

[Close]

BLAST of Tan0000526 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 81  ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 140

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 141 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 200

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 225
            G+ I GADF+D  +   Q++ LCK A G NP TG  TR++L C
Sbjct: 201 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Tan0000526 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 95  RGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 154
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 155 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 202
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

[Close]

BLAST of Tan0000526 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 96  GQDLTGKDFSGKTL---------IKQDFK-------TSILRQANFKGAKLLGASFFDADL 155
           G DL G D SG TL         ++Q+ K        +IL +A+ +GA + G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 156 TGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPL 196
           + A+L +A+LR  D     + KA+LS ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

[Close]

BLAST of Tan0000526 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 385.6 bits (989), Expect = 3.0e-103
Identity = 208/225 (92.44%), Postives = 212/225 (94.22%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP RPH    LPLPPS+ SAF N  PQV+KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRPH----LPLPPSV-SAFSN--PQVMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. NCBI nr
Match: XP_022955551.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 8.7e-103
Identity = 207/225 (92.00%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP RPH    LPLPPS+ SAF N  PQ +KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRPH----LPLPPSV-SAFSN--PQTMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. NCBI nr
Match: XP_023552471.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.0 bits (985), Expect = 8.7e-103
Identity = 206/225 (91.56%), Postives = 210/225 (93.33%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP RPH    LPLPPSIS+      PQV+KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRPH----LPLPPSISAL---SNPQVMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. NCBI nr
Match: KAG6602651.1 (Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.2 bits (975), Expect = 1.3e-101
Identity = 204/225 (90.67%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP RPHLPLP  +P     AF N  PQ +KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSIP-----AFSN--PQAMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. NCBI nr
Match: XP_022991097.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 379.4 bits (973), Expect = 2.1e-101
Identity = 204/225 (90.67%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP R HLPLP  +P     AF N  P+V+KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIP-----AFSN--PRVMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 208/225 (92.44%), Postives = 212/225 (94.22%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP RPH    LPLPPS+ SAF N  PQV+KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRPH----LPLPPSV-SAFSN--PQVMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. ExPASy TrEMBL
Match: A0A6J1GU31 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103
Identity = 207/225 (92.00%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP RPH    LPLPPS+ SAF N  PQ +KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRPH----LPLPPSV-SAFSN--PQTMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. ExPASy TrEMBL
Match: A0A6J1JKT4 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 204/225 (90.67%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP R HLPLP  +P     AF N  P+V+KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIP-----AFSN--PRVMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. ExPASy TrEMBL
Match: A0A6J1JPS6 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.0e-101
Identity = 203/225 (90.22%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLCSST RIP R HLPLP  +P     AF N  P+ +KHQVEATRN VLS+ ES
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIP-----AFSN--PRAMKHQVEATRNFVLSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKASFLAL+SASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 RGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Tan0000526 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100
Identity = 201/225 (89.33%), Postives = 210/225 (93.33%), Query Frame = 0


Query: 1   MALLNASLCSSTSRIPPRPHLPLPLPLPPSISSAFPNPQPQVLKHQVEATRNLVLSIRES 60
           MALLNASLC STSRIPP PH    L LPPSIS+   +P P VLK Q+EA+RNL+LS+ ES
Sbjct: 1   MALLNASLCCSTSRIPPAPH----LHLPPSISA---HPTPPVLKQQLEASRNLILSVGES 60

Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           ASKA+FLALLSASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILR
Sbjct: 61  ASKATFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILR 120

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           RGSTI GADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLCN
Sbjct: 181 RGSTIEGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of Tan0000526 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.3e-77
Identity = 146/175 (83.43%), Postives = 158/175 (90.29%), Query Frame = 0


Query: 51  RNLVLSIRESASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLI 110
           R++V S+ E  SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI
Sbjct: 50  RSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLI 109

Query: 111 KQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLE 170
           +QDFKTSILRQANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLE
Sbjct: 110 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169

Query: 171 GALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 226
           GA  TGNTSF+GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLCN
Sbjct: 170 GATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Tan0000526 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-56
Identity = 113/138 (81.88%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 51  RNLVLSIRESASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLI 110
           R++V S+ E  SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI
Sbjct: 50  RSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLI 109

Query: 111 KQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLE 170
           +QDFKTSILRQANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLE
Sbjct: 110 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169

Query: 171 GALATGNTSFRGSTINGA 189
           GA  TGNTSF+GS I GA
Sbjct: 170 GATVTGNTSFKGSNITGA 187

[Close]

BLAST of Tan0000526 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 81  ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 140

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 141 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 200

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 225
            G+ I GADF+D  +   Q++ LCK A G NP TG  TR++L C
Sbjct: 201 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Tan0000526 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 61  ASKASFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 120
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 7   ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 66

Query: 121 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 180
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 67  ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 126

Query: 181 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 225
            G+ I GADF+D  +   Q++ LCK A G NP TG  TR++L C
Sbjct: 127 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of Tan0000526 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 95  RGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 154
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 155 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 202
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of Tan0000526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	3.2e-76	83.43	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	2.7e-14	43.65	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	2.2e-08	31.71	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	3.2e-07	37.84	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	2.1e-06	37.07	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of Tan0000526 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955559.1	3.0e-103	92.44	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata...	[more]
XP_022955551.1	8.7e-103	92.00	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata...	[more]
XP_023552471.1	8.7e-103	91.56	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6602651.1	1.3e-101	90.67	Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022991097.1	2.1e-101	90.67	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita maxima]	[more]

BLAST of Tan0000526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWM1	1.4e-103	92.44	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]
A0A6J1GU31	4.2e-103	92.00	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moscha...	[more]
A0A6J1JKT4	1.0e-101	90.67	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima...	[more]
A0A6J1JPS6	3.0e-101	90.22	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1BVJ8	1.5e-100	89.33	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charan...	[more]

BLAST of Tan0000526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	2.3e-77	83.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	2.2e-56	81.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	1.6e-09	31.71	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	1.6e-09	31.71	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	2.3e-08	37.84	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 117..155 e-value: 1.2E-12 score: 47.2
None	No IPR available	GENE3D	2.160.20.80		coord: 82..225 e-value: 1.5E-46 score: 159.2
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 94..196
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 42..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000526.1	Tan0000526.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009534	chloroplast thylakoid