Spg039768 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039768
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCRM domain-containing protein
Locationscaffold10: 46617950 .. 46618552 (+)
RNA-Seq ExpressionSpg039768
SyntenySpg039768
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGTACTCTCTCTATCCCTCTGGAAATCTCATGGTTTCATTCAATAGTTTCGAAATCAAACACATATTCATTTTCATTTTTATCGACTTAGCCTTAGCCAACTGCGTTCACAAATCCTGCTTATTGAAATATATCAATCCATCTCGTGACAGATGATATATGCTTGTTGAAAGGTGGAGTACTCAATGTTTAGCATTATAAATACAAGATCGTTCACATTTTCCCATTGGAGGCATATGAAATTGGATGGTTGTGGTGTGATGTTTATGCAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTCATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTAGGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTTGTC

mRNA sequence

ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTCATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTAGGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTTGTC

Coding sequence (CDS)

ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTCATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTAGGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTTGTC

Protein sequence

MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV
Homology
[Close]
BLAST of Spg039768 vs. NCBI nr
Match: XP_022967603.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-31
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIPTSF QSSY SCEHQ SN I++S QE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+  P  FFFT +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+V
Sbjct: 61  STSIRYPPGFFFT-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. NCBI nr
Match: XP_022141994.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M RGR LS+A+TR++L G ISLIRNVS  SL NIP SF QS YGSCEHQRSNHI    QE
Sbjct: 1   MPRGRNLSNAVTRNSLVGFISLIRNVSRRSLSNIPASFGQSKYGSCEHQRSNHIVTPLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+H P  F F+ RRYN  E+LGGFK WQS   RHF + AVELKTDSN+V
Sbjct: 61  STSIHFPPGFLFS-RRYNVPEFLGGFKKWQS--FRHFRSVAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. NCBI nr
Match: KAG7011409.1 (putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+V
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. NCBI nr
Match: KAG6571683.1 (putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+V
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. NCBI nr
Match: XP_022963469.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata])

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+V
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. ExPASy TrEMBL
Match: A0A6J1HVJ0 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467053 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIPTSF QSSY SCEHQ SN I++S QE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+  P  FFFT +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+V
Sbjct: 61  STSIRYPPGFFFT-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. ExPASy TrEMBL
Match: A0A6J1CKB1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012231 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.2e-30
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M RGR LS+A+TR++L G ISLIRNVS  SL NIP SF QS YGSCEHQRSNHI    QE
Sbjct: 1   MPRGRNLSNAVTRNSLVGFISLIRNVSRRSLSNIPASFGQSKYGSCEHQRSNHIVTPLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+H P  F F+ RRYN  E+LGGFK WQS   RHF + AVELKTDSN+V
Sbjct: 61  STSIHFPPGFLFS-RRYNVPEFLGGFKKWQS--FRHFRSVAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. ExPASy TrEMBL
Match: A0A6J1HK68 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463795 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+V
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIV 108

[Close]
BLAST of Spg039768 vs. ExPASy TrEMBL
Match: A0A0A0K5Y2 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062730 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = 0 

Query: 1   MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQ 60
           M R RGLS  A +R +LFG I LIRNVS LSLL+IPTSFEQSS+GS EHQ S+ I +S  
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           ES S   P  F FT RRY+  E  GGFK WQS  VRHFSNA VELKTD+N V
Sbjct: 61  ESMSRDCPPGFSFT-RRYSMRESSGGFKRWQS--VRHFSNAVVELKTDNNTV 109

[Close]
BLAST of Spg039768 vs. ExPASy TrEMBL
Match: A0A1S3C151 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495436 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.8e-21
Identity = 68/112 (60.71%), Postives = 76/112 (67.86%), Query Frame = 0 

Query: 1   MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQ 60
           M R RG S   I+R +LFG  SLIRN S LSLL++PTSF QSS+GSCEHQ S+ I +S  
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVV 112
           ESTS   P     T  RY+  E  GGFK WQS  VRHFSNA VELKTDSN V
Sbjct: 61  ESTSRDCPPGSSLT-WRYSMWESYGGFKRWQS--VRHFSNAVVELKTDSNTV 109

The following BLAST results are available for this feature:
BLAST of Spg039768 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022967603.15.7e-3170.27uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
XP_022141994.11.1e-2967.57uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordic... [more]
KAG7011409.13.1e-2967.57putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma su... [more]
KAG6571683.13.1e-2967.57putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyro... [more]
XP_022963469.13.1e-2967.57uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
BLAST of Spg039768 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg039768 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVJ02.8e-3170.27uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb... [more]
A0A6J1CKB15.2e-3067.57uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Momord... [more]
A0A6J1HK681.5e-2967.57uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb... [more]
A0A0A0K5Y21.1e-2264.29CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062730 PE=4 SV... [more]
A0A1S3C1515.8e-2160.71uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumi... [more]
BLAST of Spg039768 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039768.1Spg039768.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding