Spg039302 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039302
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA exonuclease 4
Locationscaffold10: 43403679 .. 43410952 (+)
RNA-Seq ExpressionSpg039302
SyntenySpg039302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGGCGTTTTGGGAACTTGGGAATAATTTGTGACAAGTTGACGATGGACAATGGCCGCACAAAGCGCAACGAAGCAGTGGCGTTGGCTTGCAGAATGGTCGGCGCCGGCAGCGATGGGTCGCTAGATGTCTGCGCCAGGCTCTGCCTTATCGATGAAAATCAGACCATCATTTTCTCTACTTATGTTAAGCCAACGCTTCCCGTCACAAACTATTGGTAAAAACAAAGAATATTTTGGTAAATATATGATTTACTCTATCATGCATGTTTTATTTATTTATTTTTTTGTTATCGTTTGATATTTTTTAATTATACTCTTTTCGTTAACGATGTTAAATGTGACTGATGGTAAGCTTACATTTGCATGATATTTAGTGAGTCCGTGAAAATTTTGAAGGAAAAATTAGGTCACTTAAAATAGGAAAATTTTCTATATAATTCTTCTTCTGACTTTTTAAAAAGTTAGTATAGAGATTTCAAACTTTTCCTCTATTTGATGAGGTTAACTTTTTTTTAAAAAAAAAATTCCATCCACTCAAATAGTATATCATTTTTTTTTTTGGAGTTTAACACATGTGAGGATGAAGATTTGAACCTTTGATTTAATCGAGGTTATGCACCTTGATCAAATGAAGCCACATGCTCCTGTTAACGTATATCATATCACTTATTCTTGAGCCTACCATCAGTTACATTTAATTTTTACTAACCAAAAAGGTATAATTGAAAAATATTGAAATAAAACTAGAGAACATTATTCTAAACAATTAGAGGTTACATGGACAAAACGATCCAGATTTAGGTTCAATCATTGTGGGGATGAAGGATCGAACCATTGACCTGCAATTGATGGCTTTTATCCACTTAACTATGTTTAAATTTATTCATGTACGTAGGTTCGAATCCACGGGTATTCGTCCCGAATACTTGAGAGACGCACTGCCATTGAAACAAGTTCAGAAGAAAATTCAAGAGTTTCTCTGCAATGGAGAACAAATGTGGAAGATTCGACCTGGAGGTGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTAGAAGATGACCTCAAACGCTTGCAAATTGACTATCCTCCAATCATGATAAGGTAAATAAAATTTTATTATTTGAAAGAAGGATTAAAAAGAAACCATTATAAGTTTTATATGTGAAAGTTTTAATTATTATTGCAGTGTTCAATTTTTTTTATAAATTTTTCCACAGGGATACAGCTAAATATCCACCATTGATGAAAACAAGCAAGCTCAGCAATTCTCTCCACTATCTAACACAAGCATATCTTGGGCAAGTTCCACACATAACCCTAGCTACTCATAATTATTAACCATTGTTTTTTTTCTAGAAATCTCACAATTGGAGTAAAAAGTTTATGAATTTATAAATAAAGACTTAGACAACATCATTTCTACTAATATAAGGATGGTCTAAAACCAAATTCAAAAAAATTAAAAGAGGTTTTTTTTTTTTTTTTTTTTGAAGGAAAAAAAAAGTGTGGGGTGAGGGGATTCGATCATAGGGTATTCTTGACCAAGTAGAAGAGGTTGAATCATAGGGTTTAGAGTTTACAATTTTGTGTCAGTTGAGTTATGCTCTGGTTGACAGGTTTAGAGTTATGTCTTAACAAACAAATATGGTATGAACCCTAATTTTAGAGAGATGGAGAATGCAGGAGAAAACCTTGGCTTTTCTATATATCAAATGCCACACAGTAGCGATATATATATACAAGAGCCTAGGGCTAAAAACTCCTACAAATTATCAACAATTCTTTTCTCTGGAAACTTCACAAACATGGGCTAAAAGTAACGAGAAATAAAGAATTGGGCTAAAAACAATTATGGCCCATTTTATACAGTAACAAATAGATGAAAGAATAAAGGATTAGTGGGCTATCTTTACACCCCCCACAAGCCAATGGCAGTTGCATCACGAACATTGAGCTTGAATTTGAGTTTGTTGAACTGAATAGCGGATAATGGCTTTGTAAATATATCAGCGACTTGCTCGGTTGCAGGGAGATGTTGAATGAGGATTTTCTTGTGGCGAACAAGGTCTCGAACAAAGTAAATATCTAGTTCTACATGCTTTGTCTTAGAATGCAAAATTGGATTTGCACTTAAATGCACAGCTCCTAAGTTGTCACACCAGAGAATAGGAGGGTTAGACAAAAAAATATTTAAATCACTAAAGAGAGATTTTATCCAAACCAGTTCAGTCGCCACAGTAGCTAAACCACGATATTCAGCTTCGGTGCTTGATCGAGAGATGATTGATTATTTCTTGGAGCCCCAAGAAACCAAATTACCTCCAAAGTAAACACAATAACCAGTGGTGGATTTCCTATCGTCCGGATCCGAGGCCCAATCAGCATCGGCAAAACCAGCCAAAGTTAAGTCACGTGGTTTATGAATCAAAAAGCCATGATCAAGAGAGCCTTTCAAATATCTTAAGATTCTTTTAACAAGTTGCCAATGTATGAGTTTAGGGGAGTGCATAAATTGACAAGCCTTGTTAACACTATAAGATAGTTCGGGCCTAGTTAAGGTAACATATTGTAAAGCCCCGACAATGCTTCGATATAAAAAGGGGTCAGAGAAGAATTCTCCTTGAAAAGCCGAAGGAACAGAACCACTAACCATGGGTGTAGCAATGGAATTCGCATCAGACATTTGAGCTCGAGCCAAAACTTCATTAATATAGGCTGTCTGAGATAGAAACATACCTCCAGAGGAGGGATAAGAAACCTCAATCCCCAAAAAATAGTTTAGGTGGCCTAAGTCCTTGATAGAGAATTGAGCATGTAGAGATTTAATCAATAAGTCAACATCAGAAACAGAACTCCCCAAGATAATTATGTCATCGACATAAATCAGTATATAGCAGCATTGGGAAGACGAACGTCGAATCATTAATGAGGCATCAGCAGTAGACGTAATAAAACCAAGAGATTTAAGATAAGAGCTAAGACGTTCATACCATGCTCGAGGTGCTTGCTTGAGGCCATAGAGAGCCTTTTTAAGATTGCATACAAGATTTTGAGTGCCTGCAACTTTAAAACCACTTGGTTGTTCCATGAACACAGACTCGGTTAGATACCCATGTAAAAAAGCATTATTAACATCAACTTGCCTGATTGTCCAACCATAATATAGAGCCAAAGTAAGCAACACACGTATAGTAATGGGTTTCACAACAGGACTATAAGTCTCTGTGTAATCAAGGTCAGCAGATTGATGAAATCCTTTGGCTACAAGTCGAGCCTTGTATCGAGAGATAGTTCCATCAGAGTTACGTTTGATTCTAAACACCCATTTACAGCCAACAATCTTCTTGTTCTCGGGTTTCGGAACTAAATCCCATGTATTGTTTTGGATGAGAGCATCATATTCTAGTTGCATAGCTTTTCGCCAATGTTCACATTTAAGGGCTTCCTTGACATTAGGGGGTTCAGTTTCAGTATAAGATTTTTCACACAGAAATGTTTTTGGCTTGAATATACCACTCTTAGCACGAGTGACCATAGGATGAGTATTAGCGATGACATTCTCTTGAGATTGAGGAGTAATGGATTGAGGGGAGCTCTCGGTTGGTAAGGAACCTTGATCTGAGGAGCTAGAAGATGGGGAACCTTGTTCCTGAGGAGATGGAGCAGGTAACTCAACTATGGGTTCATTGTGATTAGTGATGGATGACGATGTAGAGGGAGAGCTAGAGATAACGGTTGGAGAAGGCAATAATACCTGGGATGGGTTAATTGGGTGAGGTGAAGAAGAAGTAAGCTTAAAAGGGAACTTGGATTCATTGAACAGAAAATGCCTTGATATAAAAATTTTGCCAGTGGTCGAAAGACATTTATAACCCCTGTGAGAAGGACTGTATCCTATAAAAGTGCAAGGATCAGACCTATAGGCAAGCTTATGTGTTTGATAAGGCCTAGTACAGGGAAAACACTGGCATCCAAATGTTTTAAGGAAGGAGTAATCTGGTGAGGTTTTAAATAATTTCTCGAAGGGACACATACCATTTAAGACATTTGTGGGTAACCTGTTTATGAGAAATACAGCAGTAGAGAAGGCCTCATCCCAAAATTTTAATGGCATGGAAGCATGAGATAGAAGCGCTAAACCTGTATCGACAATATGTCTATGTTTGCGCTCGGCAATGCCATTCTGTTGGGAAGTGTACGGGCAAGAGAAGCGATGAGTTATACCATGGGATTGAAGAAAGGGAGTGAAGGATTTGAACTCACCTCCATTGTCAGATTGGAAGCACAAAATAGAGGTTCCTAACAATTTTTCAACCAGATTTTTAAAGTTTAAGAAGGCAGTGAAGGCATCAGACTTAGATCTAAGAAAATACACCCAGGTGTATCTGCTATATGCATCGATGAAGCTAATGTAATAGCGAAAGCAGGAGGTTGAGGCTAAGTATGTAGGACCCCAAAGATCAGACACAACAAGTTGCAAAGGAGCAGTGTAATTAGTTTGAGAGGAAGGAAAAGGGAGATTATGATGTTTACCCATAGCACACGCATCACAAAATTGAAAAGTATTATTTATATATAACTGAGGCTTATACACCCGAAGAACGCTTTTTACAGTGGATAAAGACGGGTGACCTAGCCTCCTATGCCAAAGGTCAAGTAAAGAGCAAGAACTAACAGACTCATGTTGTAAACTAGAAGATGGGGACTGAGTGACTAGAGCTTAGATTGCTGTATTTCCCTTAAACGGAGGATGAGAAGAGAGGTTGAACCGATAAAGTCCATCATGTAGAGTCCCTTGGAGCAGAACCTGGCCAGTAACTTGATCCTTCACATAACAGAAGGTGGGATGGAATTCAAAGAAAACACCGTTATCTTTAGCAAATTGACTTACAGAAATTAAATTCTTCGTAATAGAAGGAACATGTAGTAGATTATTTAAGTGAAAGATACGATTGCCACAAAATGGAGAAGTAAAAGAAGAAAACCCATAGTTTAATATAGGCAGACCTGCTCCATTTCCAACATGAACTTGGTTTGAGCCACCATATTCTGACCCAACAGAGAGGTTGTTAAAATTATGTGTGAGATGATTGGTGGCGCCCGAGTCTGGATACCAGTTGGTATCTTGATTCAAGTCAGGTGAGGCTACCATTGCTGACATCTGAGGAAAAGATGTAGACCGGTTAAAATTATTAAAACCTGAAGAATACGCACCTGGTGACATTGAAGATGACTGAGGGGCATATCGGAAGAAGCATTTGGCAGCAGTATGGCCAAACTTGGTGCAAAGTTGGCATTGAACTTTATTTCGATTGTTCCAGGAACGTCCTCCACCACGATTAGAGTAATCACGACCACCACGTCCACCCCTGTTACCACTACCAATATTTGAAGAAAATTGAGATTGATTAGTTTTAGATGAATCTGATTCAGGGGGTTTTGATTGAACCATGAGGTTCACAGATGGGACCGAACTCTCAATGGGAACAAGCTTGCTCTCTATACGATTTTCCTGAGTGAGAAGAAGAGACATGACTTCCTGAACAGTTTGTGGACCAATCTTGGCCGTGATAACAGACACCATCGACTCATAATCAGACCCAAGACCAGAGAGAATAAACAATATGTGATCCTCTACCTCAACAGGTTTGCCAACCGCAGCAAGGGCATCAACATACTGCTGTATTTTAGAAAAATACTCTTTAAGTGACATACCTCCTTTTTGAATCGTTTGAAGCTTGGTTTTGATCTTCATCATTTGGGCTAGGTTACGTGTGGTAAAGATCTGTTGAAGAGCAGTCCATATTTCTTTGGTCGTGGTGCAGTGAATCATTTGATGAAGAAGGTCCTCAGTCATGGACCCAACAAGCCAAGACGAAATCACCTTATCTTGGCGCTTCCATTGAAGATAGGTCGGATTGGGCGTGGGTGGTGGCGTCGCGTCACTGCTTGAGGAGGAACTAGCTGGAGAACCGAGAGTTTTCGGCGGCGGATCCTCCAAAAGATGCGATTCAAGGTCATATCCCTCAAGGGCAGTGAGTATCTGAAATTTCCAGAGAAGAAAGTTGTCATCAGTTAGTTTGACGATAGAGATTTTGTTACCGGGACAAAACGCTTGCGAAGAACCAGCTGAAGAATCGCCTAGGGCACCGCTCAGAGAGCTTTCAGGAGTCGACATAGAGGCCGATTAGGCCGAAAAAGAAAACGAGAGGATCGATTAGAGCGAAGTCGTTAGACAAGGCTCTGATACCATCTTAACAAACAAATATGGTATGAACCCTAATTTTAGAGAGATGGAGAATGCAGGAGAAAACCTTGGCTTTTCTATATATCAAATGCCACACAGTAGCGATATATATATACAAGAGCCTAGGGCTAAAAACTCCTACAAATTATCAACAATTCTTTTCTCTGGAAACTTCACAGACATGGGCTAAATGTAACGAGAAATAAAGAATTGGGCTAAAAACAATTATGGCCCATTTTATACAGTAACAAATAGATGAAAGAATAAAGGATTAGTGGGCTATCTTTACATTATGTTTAACTCTAAAAAGTGTATAATTTGTCTAACTTTCGATATTGTGTCTAATAGACCCTATACTTTAATACAAATTTCTTAATTTGAAACAAAGGCAAATAGGACCTTTTTTTGAAAAACAATGTATAATAGATTAGGACCTACTAAATATGAAATTTAAGATTCAAGAATCTACTGACCATTTGTTTAAGTTCAATTACCTATTAAACGCAACTTTGAAAGTTTAGAGATTTATTAGACACATTCTAAATGTTTAGGGCTAACCTTGGTAGGTTAACCAAAGTAGAAATTATTATACCAACGCAAAGATATATAGAGAGGTTCAATGTTCTAATAGGAATGGTTTGTATATTTTAGCCAATTTGAGCATATAACGGTTATTCGATTTTCACACCTACAATTGTTGAACTAAAAAAATGTATAGTATGTCCATTTTACGATGTAAATGAATGACGAGTCGGGTGTCGTTTGTTACGCAGGTACGATATTCAAAATGGCAACAAAGACCCCTATGAGGATTGTGTTGCGACGATGAAGTTGTACATGAGAATGAGATCCGAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAATAAAAATAATTTTGCAATTTGGAAGCAATATGAACTGGAGAGGATGAGCCCAGAACAGATGTTGGAAATCTCAAGATCTGATTACTATTGTTGGTGCTTGGACTCCAAGGTTAATTAA

mRNA sequence

ATGGGCGGGCGTTTTGGGAACTTGGGAATAATTTGTGACAAGTTGACGATGGACAATGGCCGCACAAAGCGCAACGAAGCAGTGGCGTTGGCTTGCAGAATGGTCGGCGCCGGCAGCGATGGGTCGCTAGATGTCTGCGCCAGGCTCTGCCTTATCGATGAAAATCAGACCATCATTTTCTCTACTTATGTTAAGCCAACGCTTCCCGTCACAAACTATTGGTTCGAATCCACGGGTATTCGTCCCGAATACTTGAGAGACGCACTGCCATTGAAACAAGTTCAGAAGAAAATTCAAGAGTTTCTCTGCAATGGAGAACAAATGTGGAAGATTCGACCTGGAGGTGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTAGAAGATGACCTCAAACGCTTGCAAATTGACTATCCTCCAATCATGATAAGGTACGATATTCAAAATGGCAACAAAGACCCCTATGAGGATTGTGTTGCGACGATGAAGTTGTACATGAGAATGAGATCCGAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAATAAAAATAATTTTGCAATTTGGAAGCAATATGAACTGGAGAGGATGAGCCCAGAACAGATGTTGGAAATCTCAAGATCTGATTACTATTGTTGGTGCTTGGACTCCAAGGTTAATTAA

Coding sequence (CDS)

ATGGGCGGGCGTTTTGGGAACTTGGGAATAATTTGTGACAAGTTGACGATGGACAATGGCCGCACAAAGCGCAACGAAGCAGTGGCGTTGGCTTGCAGAATGGTCGGCGCCGGCAGCGATGGGTCGCTAGATGTCTGCGCCAGGCTCTGCCTTATCGATGAAAATCAGACCATCATTTTCTCTACTTATGTTAAGCCAACGCTTCCCGTCACAAACTATTGGTTCGAATCCACGGGTATTCGTCCCGAATACTTGAGAGACGCACTGCCATTGAAACAAGTTCAGAAGAAAATTCAAGAGTTTCTCTGCAATGGAGAACAAATGTGGAAGATTCGACCTGGAGGTGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTAGAAGATGACCTCAAACGCTTGCAAATTGACTATCCTCCAATCATGATAAGGTACGATATTCAAAATGGCAACAAAGACCCCTATGAGGATTGTGTTGCGACGATGAAGTTGTACATGAGAATGAGATCCGAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAATAAAAATAATTTTGCAATTTGGAAGCAATATGAACTGGAGAGGATGAGCCCAGAACAGATGTTGGAAATCTCAAGATCTGATTACTATTGTTGGTGCTTGGACTCCAAGGTTAATTAA

Protein sequence

MGGRFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMIRYDIQNGNKDPYEDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKVN
Homology
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BLAST of Spg039302 vs. NCBI nr
Match: KAG7033124.1 (RNA exonuclease 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.5 bits (1020), Expect = 7.6e-107
Identity = 186/221 (84.16%), Postives = 204/221 (92.31%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF N+G ICDKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDEN+TIIFSTY
Sbjct: 75  RFRNMG-ICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTY 134

Query: 64  VKPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 123
           V PTLP+TNY  ESTG+ PEY+RD A+PLKQVQKKIQ+ LCNGE MWKIRPG GGKARIL
Sbjct: 135 VNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARIL 194

Query: 124 VGHGLEDDLKRLQIDYPPIMIRYDIQNGNKDPYEDCVATMKLYMRMRSEVHKIEEYPLAS 183
           VGHGL D LK LQI+YPP MIRYDIQNG+KDPYEDCVATM+LYMRMRS+VHKIEEYPLAS
Sbjct: 195 VGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLAS 254

Query: 184 DPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKV 224
           DPQNKNNFAIWKQ+ELERMSPEQMLE+SRSDYYCWCLDSK+
Sbjct: 255 DPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL 294

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BLAST of Spg039302 vs. NCBI nr
Match: KAG6602442.1 (hypothetical protein SDJN03_07675, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384.8 bits (987), Expect = 5.1e-103
Identity = 185/234 (79.06%), Postives = 202/234 (86.32%), Query Frame = 0 

Query: 5   FGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYV 64
           F N G ICDKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDEN+TIIFSTYV
Sbjct: 110 FRNTG-ICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYV 169

Query: 65  KPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILV 124
            PTLP+TNY  ESTG+ PEY+RD A+PLKQVQKKIQ+ LCNGE MWKIRPG GGKARILV
Sbjct: 170 NPTLPITNYRLESTGVGPEYMRDHAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILV 229

Query: 125 GHGLEDDLKRLQIDYPPIMI--------------RYDIQNGNKDPYEDCVATMKLYMRMR 184
           GHGL D LK LQI+YPP MI              RYDIQNG+KDPYEDCVATM+LYMRMR
Sbjct: 230 GHGLGDHLKSLQIEYPPFMIRMKIDNESGAICLCRYDIQNGSKDPYEDCVATMRLYMRMR 289

Query: 185 SEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKV 224
           S+VHKIEEYPLASDPQNKNNFAIWKQ+ELERMSPEQMLE+SRSDYYCWCLDSK+
Sbjct: 290 SQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL 342

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BLAST of Spg039302 vs. NCBI nr
Match: XP_022990586.1 (RNA exonuclease 4-like [Cucurbita maxima])

HSP 1 Score: 384.8 bits (987), Expect = 5.1e-103
Identity = 188/249 (75.50%), Postives = 204/249 (81.93%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF N+G ICDKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDE +TIIFSTY
Sbjct: 109 RFRNMG-ICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDEKETIIFSTY 168

Query: 64  VKPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 123
           V PTLP+TNY  ESTG+ PEYLRD A+PLKQVQKKIQ+ LCNGE MWKIRPG GGKARIL
Sbjct: 169 VNPTLPITNYRLESTGVGPEYLRDHAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARIL 228

Query: 124 VGHGLEDDLKRLQIDYPPIMIR---------------------------YDIQNGNKDPY 183
           VGHGL D LK LQI+YPP MIR                           YDIQNGNKDPY
Sbjct: 229 VGHGLGDHLKTLQIEYPPFMIRDTANYPPLMKTSKLTNSLHYLTQAYLGYDIQNGNKDPY 288

Query: 184 EDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYY 225
           EDCVATM+LYMRMR++VHKIEEYPLASDPQNKNNFAIWKQ+ELERMSPEQMLEISRSDYY
Sbjct: 289 EDCVATMRLYMRMRAQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEISRSDYY 348

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BLAST of Spg039302 vs. NCBI nr
Match: XP_022961916.1 (RNA exonuclease 4-like [Cucurbita moschata])

HSP 1 Score: 382.9 bits (982), Expect = 1.9e-102
Identity = 186/248 (75.00%), Postives = 204/248 (82.26%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF N+G ICDKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDEN+TIIFSTY
Sbjct: 109 RFRNMG-ICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTY 168

Query: 64  VKPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 123
           V PTLP+TNY  ESTG+ PEY+RD A+PLKQVQKKIQ+ LCNGE MWKIRPG GGKARIL
Sbjct: 169 VNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARIL 228

Query: 124 VGHGLEDDLKRLQIDYPPIMIR---------------------------YDIQNGNKDPY 183
           VGHGL D LK LQI+YPP MIR                           YDIQNG+KDPY
Sbjct: 229 VGHGLGDHLKSLQIEYPPFMIRDTANYPPLMKTSKLTNSLHYLTQAYLGYDIQNGSKDPY 288

Query: 184 EDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYY 224
           EDCVATM+LYMRMRS+VHKIEEYPLASDPQNKNNFAIWKQ+ELERMSPEQMLE+SRSDYY
Sbjct: 289 EDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYY 348

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BLAST of Spg039302 vs. NCBI nr
Match: XP_023543310.1 (RNA exonuclease 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.3 bits (965), Expect = 1.8e-100
Identity = 184/249 (73.90%), Postives = 202/249 (81.12%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF N+GI  DKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDEN+TIIFSTY
Sbjct: 109 RFRNMGIY-DKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTY 168

Query: 64  VKPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 123
           V PTLP+TNY  ESTG+ PEY+RD A+PLKQV KKI++ LCNGE MWKIRPG GGKARIL
Sbjct: 169 VNPTLPITNYRLESTGVGPEYMRDHAMPLKQVGKKIEDILCNGEPMWKIRPGVGGKARIL 228

Query: 124 VGHGLEDDLKRLQIDYPPIMIR---------------------------YDIQNGNKDPY 183
           VGHGL D LK LQI+YPP MIR                           YDIQN NKDPY
Sbjct: 229 VGHGLGDHLKSLQIEYPPFMIRDTAYYPPLMKTSKLTNSLHYLTQAYLGYDIQNENKDPY 288

Query: 184 EDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYY 225
           EDCVATM+LYMRMRS+VHKIEEYPLASDPQNKNNFAIWKQ+ELERMSPEQMLE+SRSDYY
Sbjct: 289 EDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYY 348

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BLAST of Spg039302 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 9.9e-17
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 0 

Query: 27  AVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPEYLR 86
           A+AL C MVG G  G   + AR+ ++++    ++  YVKPT PVT+Y    +GIRPE L+
Sbjct: 243 ALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK 302

Query: 87  DALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMIRYD 146
               L+ VQK++ E L               K RILVGH L +DLK L +D+P   IR D
Sbjct: 303 QGEELEVVQKEVAEML---------------KGRILVGHALHNDLKVLFLDHPKKKIR-D 362

Query: 147 IQNGNKDPYEDCVATMKLYMRMRSE 172
            Q     P++  V + +  +R+ SE
Sbjct: 363 TQ--KYKPFKSQVKSGRPSLRLLSE 369

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BLAST of Spg039302 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 0 

Query: 26  EAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPEYL 85
           +A+AL C MVG G  G   + AR+ ++++    ++  YVKPT PVT+Y    +GIRPE L
Sbjct: 252 KALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 311

Query: 86  RDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMIR 145
           +     + V+K++ E L               K RILVGH L +DLK L +D+P   IR
Sbjct: 312 KQGEEFEVVKKEVAEML---------------KGRILVGHALHNDLKVLFLDHPKKKIR 355

[Close]
BLAST of Spg039302 vs. ExPASy Swiss-Prot
Match: O94375 (RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rex4 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 51/195 (26.15%), Postives = 91/195 (46.67%), Query Frame = 0 

Query: 9   GIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTL 68
           G+   KLT         + +A+ C MVG   D  + V AR+ +++ +  +++ TYV+P  
Sbjct: 75  GVDASKLTRKTNLETLGKYIAMDCEMVGVADD--MSVLARVSIVNYHGHVVYDTYVRPKE 134

Query: 69  PVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLE 128
            VT++    +G++  ++RDA   ++VQ ++ + L N               R+LVGH + 
Sbjct: 135 KVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDN---------------RVLVGHAVH 194

Query: 129 DDLKRLQIDYPPIMIR----------------------------YDIQNGNKDPYEDCVA 176
           +DLK L + +P  MIR                             DIQ+G     +D  A
Sbjct: 195 NDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSGQHSSVQDAQA 252

[Close]
BLAST of Spg039302 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-14
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0 

Query: 28  VALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPEYLRD 87
           VA+ C MVG G DG   + AR+ +++     ++  YVKPT  VT+Y    +GIRPE ++ 
Sbjct: 235 VAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKK 294

Query: 88  ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMIR 145
             P K VQK++ E L               + R LVGH + +DLK L +D+P   IR
Sbjct: 295 GEPFKVVQKEVSEIL---------------RGRTLVGHAVHNDLKILFLDHPKKAIR 336

[Close]
BLAST of Spg039302 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.8e-14
Identity = 51/197 (25.89%), Postives = 84/197 (42.64%), Query Frame = 0 

Query: 8   LGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPT 67
           +GI  D     N   +  + +A+ C  VG G +G     AR+ +++    ++   +VKP 
Sbjct: 102 VGISEDTRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPR 161

Query: 68  LPVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGL 127
             V  +    +GI+PE++++A+  K+ QKK  + L               + RILVGH L
Sbjct: 162 EKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADIL---------------EGRILVGHAL 221

Query: 128 EDDLKRLQIDYPPIMIR-----------------------------YDIQNGNKDPYEDC 176
           + DL+ L + +P  ++R                               IQ G     ED 
Sbjct: 222 KHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDA 281

[Close]
BLAST of Spg039302 vs. ExPASy TrEMBL
Match: A0A6J1JNC8 (RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111487420 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.5e-103
Identity = 188/249 (75.50%), Postives = 204/249 (81.93%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF N+G ICDKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDE +TIIFSTY
Sbjct: 109 RFRNMG-ICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDEKETIIFSTY 168

Query: 64  VKPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 123
           V PTLP+TNY  ESTG+ PEYLRD A+PLKQVQKKIQ+ LCNGE MWKIRPG GGKARIL
Sbjct: 169 VNPTLPITNYRLESTGVGPEYLRDHAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARIL 228

Query: 124 VGHGLEDDLKRLQIDYPPIMIR---------------------------YDIQNGNKDPY 183
           VGHGL D LK LQI+YPP MIR                           YDIQNGNKDPY
Sbjct: 229 VGHGLGDHLKTLQIEYPPFMIRDTANYPPLMKTSKLTNSLHYLTQAYLGYDIQNGNKDPY 288

Query: 184 EDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYY 225
           EDCVATM+LYMRMR++VHKIEEYPLASDPQNKNNFAIWKQ+ELERMSPEQMLEISRSDYY
Sbjct: 289 EDCVATMRLYMRMRAQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEISRSDYY 348

[Close]
BLAST of Spg039302 vs. ExPASy TrEMBL
Match: A0A6J1HBP2 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111462538 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.3e-103
Identity = 186/248 (75.00%), Postives = 204/248 (82.26%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF N+G ICDKLT DNGR +R+EAVALACRMVG GSDGSLD+CAR+CLIDEN+TIIFSTY
Sbjct: 109 RFRNMG-ICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTY 168

Query: 64  VKPTLPVTNYWFESTGIRPEYLRD-ALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 123
           V PTLP+TNY  ESTG+ PEY+RD A+PLKQVQKKIQ+ LCNGE MWKIRPG GGKARIL
Sbjct: 169 VNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARIL 228

Query: 124 VGHGLEDDLKRLQIDYPPIMIR---------------------------YDIQNGNKDPY 183
           VGHGL D LK LQI+YPP MIR                           YDIQNG+KDPY
Sbjct: 229 VGHGLGDHLKSLQIEYPPFMIRDTANYPPLMKTSKLTNSLHYLTQAYLGYDIQNGSKDPY 288

Query: 184 EDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYY 224
           EDCVATM+LYMRMRS+VHKIEEYPLASDPQNKNNFAIWKQ+ELERMSPEQMLE+SRSDYY
Sbjct: 289 EDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYY 348

[Close]
BLAST of Spg039302 vs. ExPASy TrEMBL
Match: A0A2N9IYD2 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57794 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.1e-94
Identity = 165/219 (75.34%), Postives = 193/219 (88.13%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF NLG ICD L++DNG T+  + VALA +MVG G DGSLD+CAR+CLIDE++ IIF +Y
Sbjct: 111 RFANLG-ICDNLSIDNGGTRGQQVVALAGKMVGGGRDGSLDLCARVCLIDESENIIFHSY 170

Query: 64  VKPTLPVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILV 123
           VKP +PVTNY +E+TGIRPEYLRDA+PL+QVQKKIQ+FLCNGE MWKIRP   GKARILV
Sbjct: 171 VKPPIPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRP-KVGKARILV 230

Query: 124 GHGLEDDLKRLQIDYPPIMIRYDIQNGNKDPYEDCVATMKLYMRMRSEVHKIEEYPLASD 183
           GHGL+ DL RLQ++YP IMIRYDIQ G +DPYEDCVATM+LYM M+S+VHKIE+YPLASD
Sbjct: 231 GHGLDHDLDRLQVEYPAIMIRYDIQTGIQDPYEDCVATMRLYMSMKSQVHKIEDYPLASD 290

Query: 184 PQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSK 223
           PQN+NNFA W+Q ELERM+PEQMLEISRSDYYCWCLDS+
Sbjct: 291 PQNRNNFASWRQNELERMTPEQMLEISRSDYYCWCLDSR 327

[Close]
BLAST of Spg039302 vs. ExPASy TrEMBL
Match: A0A7N2KZJ0 (RNA exonuclease 4 OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 4.1e-90
Identity = 165/246 (67.07%), Postives = 195/246 (79.27%), Query Frame = 0 

Query: 4   RFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTY 63
           RF NLG I D LT++NG T+  + VALAC+MVG GSDGSLD+CAR+CLIDE++ IIF TY
Sbjct: 111 RFANLG-IRDNLTVENGGTRGPQVVALACKMVGGGSDGSLDLCARVCLIDESENIIFHTY 170

Query: 64  VKPTLPVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILV 123
           VKP +PVTNY +E+TGIRPEYLRDA+PL+QVQ+KIQ+FLCNGE MWKIRP  GGKARILV
Sbjct: 171 VKPPIPVTNYRYETTGIRPEYLRDAMPLRQVQRKIQDFLCNGEPMWKIRP-KGGKARILV 230

Query: 124 GHGLEDDLKRLQIDYPPIMIR---------------------------YDIQNGNKDPYE 183
           GHGL+ DL RLQ++YP IM+R                           YDIQ G +DPYE
Sbjct: 231 GHGLDHDLDRLQVEYPAIMMRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYE 290

Query: 184 DCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYC 223
           DCVAT++L+MRMRS+VHK E+YPLASDPQN+NNFA W+Q ELERMSPEQ+LEISRSDYYC
Sbjct: 291 DCVATLRLFMRMRSQVHKKEDYPLASDPQNRNNFASWRQNELERMSPEQLLEISRSDYYC 350

[Close]
BLAST of Spg039302 vs. ExPASy TrEMBL
Match: A0A4Y1R8T1 (RNA exonuclease 4 OS=Prunus dulcis OX=3755 GN=Prudu_010383 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.9e-90
Identity = 165/239 (69.04%), Postives = 189/239 (79.08%), Query Frame = 0 

Query: 3   GRFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFST 62
           GRF NLGI   +   +NG T+  + VALAC+MVG GSDGSLD+CA++CLIDE + IIF +
Sbjct: 122 GRFANLGI---RDNTENGSTRGTQVVALACKMVGGGSDGSLDLCAKVCLIDEYENIIFQS 181

Query: 63  YVKPTLPVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARIL 122
           YVKP LPVTNY +E+TGIRPEYLRDA+PL+QVQKKIQ+FLCNGE MWKIRP  GGKARIL
Sbjct: 182 YVKPLLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRP-RGGKARIL 241

Query: 123 VGHGLEDDLKRLQIDYPPIMIR-------------------YDIQNGNKDPYEDCVATMK 182
           VGHGL+ DL  LQ++YP +MIR                   YDIQ G +DPYEDCVATMK
Sbjct: 242 VGHGLDHDLDSLQVEYPQVMIRDTAKYPPLMKTSKLSNSLKYDIQTGIQDPYEDCVATMK 301

Query: 183 LYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSK 223
           LYMRMRS+VHK E YPLASDPQN+NNFA W+Q ELERMSPEQMLE SRSDYYCWCLDS+
Sbjct: 302 LYMRMRSQVHKTEAYPLASDPQNRNNFASWRQNELERMSPEQMLEASRSDYYCWCLDSR 356

[Close]
BLAST of Spg039302 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 292.0 bits (746), Expect = 4.2e-79
Identity = 141/236 (59.75%), Postives = 171/236 (72.46%), Query Frame = 0 

Query: 13  DKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTN 72
           DK  +D   ++    VAL+C+MVG GSDGSLD+CAR+C+ DE+  +IF TYVKP++ VT+
Sbjct: 121 DKAMIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTS 180

Query: 73  YWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLK 132
           Y +E+TGIRPE LRDA+PLKQVQ+KIQEFLCNGE MWKIRP  GGKARILVGHGL+ DL 
Sbjct: 181 YRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRP-RGGKARILVGHGLDHDLD 240

Query: 133 RLQIDYPPIMIR---------------------------YDIQNGNKDPYEDCVATMKLY 192
           RLQ++YP  MIR                           YD+  G +DPYEDCVATM+LY
Sbjct: 241 RLQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLY 300

Query: 193 MRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDS 222
            RMR + HKIE YPLA+D QN++N   W+Q E ERMSP++ML ISRSDYYCWCLDS
Sbjct: 301 TRMRYQKHKIEAYPLAADAQNRSNQVAWRQSEAERMSPDEMLSISRSDYYCWCLDS 355

[Close]
BLAST of Spg039302 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 285.4 bits (729), Expect = 3.9e-77
Identity = 137/233 (58.80%), Postives = 169/233 (72.53%), Query Frame = 0 

Query: 16  TMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWF 75
           T+D   ++    VAL+C+MVG GSDGSLD+CAR+C+ DE++ ++F TYVKPT+PVTNY +
Sbjct: 115 TIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRY 174

Query: 76  ESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQ 135
           E TGIRPE LRDA+ LK  Q+K+QEFLCNGE MWKIRP   GKARILVGHGL++ L  LQ
Sbjct: 175 EMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRP-RNGKARILVGHGLDNHLDSLQ 234

Query: 136 I-----------DYPPIM----------------IRYDIQNGNKDPYEDCVATMKLYMRM 195
           +           +YPP+M                + YDI  G +DPYEDCVATM+LY RM
Sbjct: 235 LEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRM 294

Query: 196 RSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDS 222
           R + H+ E YPLASD QN NNFA W+Q ELERMSPE++L++SRSDYYCWCLDS
Sbjct: 295 RYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDS 346

[Close]
BLAST of Spg039302 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-40
Identity = 86/228 (37.72%), Postives = 129/228 (56.58%), Query Frame = 0 

Query: 24  RNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPE 83
           R +A+AL C MVG G+DG++D CA +CL+D+++ +IFST+V+P LPVT+Y  E TG+  E
Sbjct: 129 RLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKE 188

Query: 84  YLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMI 143
            L+D +PL+ V++++  FLC G+        G G+  +LVGH L  D+  L+++YP  ++
Sbjct: 189 DLKDGMPLEHVRERVFSFLCGGQN------DGAGRL-LLVGHDLRHDMSCLKLEYPSHLL 248

Query: 144 R---------------------------YDIQNGNKDPYEDCVATMKLYMRMRSEVHKIE 203
           R                           Y IQ G  + YEDCV+ M+LY RMR + H   
Sbjct: 249 RDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH--- 308

Query: 204 EYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKVN 225
              + S     N     KQ +LE+M+ E++ + S S+Y CWCLD   N
Sbjct: 309 ---VCSGKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLSN 343

[Close]
BLAST of Spg039302 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-40
Identity = 86/228 (37.72%), Postives = 129/228 (56.58%), Query Frame = 0 

Query: 24  RNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPE 83
           R +A+AL C MVG G+DG++D CA +CL+D+++ +IFST+V+P LPVT+Y  E TG+  E
Sbjct: 129 RLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKE 188

Query: 84  YLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMI 143
            L+D +PL+ V++++  FLC G+        G G+  +LVGH L  D+  L+++YP  ++
Sbjct: 189 DLKDGMPLEHVRERVFSFLCGGQN------DGAGRL-LLVGHDLRHDMSCLKLEYPSHLL 248

Query: 144 R---------------------------YDIQNGNKDPYEDCVATMKLYMRMRSEVHKIE 203
           R                           Y IQ G  + YEDCV+ M+LY RMR + H   
Sbjct: 249 RDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH--- 308

Query: 204 EYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKVN 225
              + S     N     KQ +LE+M+ E++ + S S+Y CWCLD   N
Sbjct: 309 ---VCSGKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLSN 343

[Close]
BLAST of Spg039302 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-40
Identity = 86/228 (37.72%), Postives = 129/228 (56.58%), Query Frame = 0 

Query: 24  RNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPE 83
           R +A+AL C MVG G+DG++D CA +CL+D+++ +IFST+V+P LPVT+Y  E TG+  E
Sbjct: 129 RLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKE 188

Query: 84  YLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMI 143
            L+D +PL+ V++++  FLC G+        G G+  +LVGH L  D+  L+++YP  ++
Sbjct: 189 DLKDGMPLEHVRERVFSFLCGGQN------DGAGRL-LLVGHDLRHDMSCLKLEYPSHLL 248

Query: 144 R---------------------------YDIQNGNKDPYEDCVATMKLYMRMRSEVHKIE 203
           R                           Y IQ G  + YEDCV+ M+LY RMR + H   
Sbjct: 249 RDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH--- 308

Query: 204 EYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKVN 225
              + S     N     KQ +LE+M+ E++ + S S+Y CWCLD   N
Sbjct: 309 ---VCSGKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLSN 343

The following BLAST results are available for this feature:
BLAST of Spg039302 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033124.17.6e-10784.16RNA exonuclease 4, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6602442.15.1e-10379.06hypothetical protein SDJN03_07675, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022990586.15.1e-10375.50RNA exonuclease 4-like [Cucurbita maxima][more]
XP_022961916.11.9e-10275.00RNA exonuclease 4-like [Cucurbita moschata][more]
XP_023543310.11.8e-10073.90RNA exonuclease 4-like [Cucurbita pepo subsp. pepo][more]
BLAST of Spg039302 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9GZR29.9e-1737.93RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2[more]
Q6PAQ41.1e-1538.66RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2[more]
O943751.6e-1426.15RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2848... [more]
Q915603.5e-1437.61RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2[more]
Q082377.8e-1425.89RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55... [more]
BLAST of Spg039302 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JNC82.5e-10375.50RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111487420 PE=3 SV=1[more]
A0A6J1HBP29.3e-10375.00RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111462538 PE=3 SV=1[more]
A0A2N9IYD26.1e-9475.34C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5779... [more]
A0A7N2KZJ04.1e-9067.07RNA exonuclease 4 OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A4Y1R8T16.9e-9069.04RNA exonuclease 4 OS=Prunus dulcis OX=3755 GN=Prudu_010383 PE=3 SV=1[more]
BLAST of Spg039302 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G27970.14.2e-7959.75Exonuclease family protein [more]
AT5G40310.13.9e-7758.80Exonuclease family protein [more]
AT2G48100.11.7e-4037.72Exonuclease family protein [more]
AT2G48100.21.7e-4037.72Exonuclease family protein [more]
AT2G48100.31.7e-4037.72Exonuclease family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 26..174
e-value: 4.4E-5
score: 32.6
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 52..147
e-value: 4.7E-7
score: 30.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 22..144
e-value: 7.8E-22
score: 79.6
NoneNo IPR availablePANTHERPTHR12801:SF122OS02G0709000 PROTEINcoord: 145..221
NoneNo IPR availablePANTHERPTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDcoord: 145..221
NoneNo IPR availablePANTHERPTHR12801:SF122OS02G0709000 PROTEINcoord: 4..144
NoneNo IPR availablePANTHERPTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDcoord: 4..144
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 40..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039302.1Spg039302.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006364 rRNA processing
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding