Spg038945 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038945
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Methionyl-tRNA formyltransferase
Location	scaffold12: 3123089 .. 3124375 (-)
RNA-Seq Expression	Spg038945
Synteny	Spg038945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGCATTACAGAACTTTTCATTAAGATGTTTTCATCTGTGTTTGAACCTTCGAGTGAACTTAATAAGGAAAACTCTAAGTCTCTTAGGTCGAGGTTTGAGGTGGGTAGTGCCCTCTAGATTAAGGGCCCTGATACTGGATTAAAAAGAAAAAATCACAAAAACTTGCATCAAGCTTCACAAACCTCCCAAAATACAAGTTTCACAGCCAAGATCTTCCCAATTTGAAGCAAATAGCAATTACTGAAAAGGAATAAAGTCTATTTTTTTTTAATCTAAAAAAAACCCACCAAGAATAGTCAAGTTTTAAACACATTATCAAGAACACATGCACCCACTCCTTAGTTGCACCCCTCAAAATCTTATTATTTGTTTCCAACCATAAATTGCATAAGATTGCCTTTATGACATTTCTCTACAATTTCTTTGCCCTTCCTTCAAAAAGAGTTCCACAGAGATCACTTGCATTTCTCACTTTGTTAATAATGGTACATCTCTTCACTTGTTCTCTAAAATACACAACATCACACTTTTACCTAGAATAAAGTTGAATTACTACCATTTTGCGCAAACTTGTTTTCAACATTTTCATTCTGGTGATATTTTTTGTGATGTTGTACAGCAATCGGCCTCTAATTGGAGTGCCCTTGATAGAAATTTTTGTAATTATTCGGCTGCCATGATTATGCTTCATTGGAAGGCTTTTGTGTAGTTTTTCTCGGAAAGGGATGCCTTATCCCTTGTCCTTTGGCTGTTTTTGTTGTGGCATTCTTGAATGAAAGTTCTATGTTTCTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTTTCATTCTGGTGCGCTTTGGTTATTTCACCAGGTACTGGAAGTTCAATTACCTGGAAAGAAGGTTGTGAGCGCTGGCGCCTTTTGGAATGGCATGCAAGGGAAAAAGTTGAAGAAATTTGATGAAAGTAAGCATTTTTCGCACGTCTCATCGTGATATTTAGATGTAATCTAGGTGAAGATGAAGAAATTTGATGAACGTAAACATTTTTCACACATGTTTTAATATTTATATGTAATCTGGGTGATGCAAATTTCTGCATCTTTTATAGAACTACTATGTTTTCTCATTTGTCAACATGGATTTCTGAATATTTATTGATCTGCAATTGATCTCACCTTGGTTTGCTGGGAAATCTGTCTTGTATAATGGGAAATACCAAACTTTCCATAGTCCAAACTTTCCCAAACTATAGCTATTCATGATACCAAGTTAGACAATTACTCCATTTTGAG

mRNA sequence

ATGTGGGGCATTACAGAACTTTTCATTAAGATGTTTTCATCTGTGTTTGAACCTTCGAGTGAACTTAATAAGGAAAACTCTAAGTCTCTTAGGTCGAGGTTTGAGGTACTGGAAGTTCAATTACCTGGAAAGAAGGTTGTGAGCGCTGGCGCCTTTTGGAATGGCATGCAAGGGAAAAAGTTGAAGAAATTTGATGAAAGTAAGCATTTTTCGCACGTCTCATCGTGA

Coding sequence (CDS)

ATGTGGGGCATTACAGAACTTTTCATTAAGATGTTTTCATCTGTGTTTGAACCTTCGAGTGAACTTAATAAGGAAAACTCTAAGTCTCTTAGGTCGAGGTTTGAGGTACTGGAAGTTCAATTACCTGGAAAGAAGGTTGTGAGCGCTGGCGCCTTTTGGAATGGCATGCAAGGGAAAAAGTTGAAGAAATTTGATGAAAGTAAGCATTTTTCGCACGTCTCATCGTGA

Protein sequence

MWGITELFIKMFSSVFEPSSELNKENSKSLRSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVSS

Homology

[Close]

BLAST of Spg038945 vs. NCBI nr
Match: XP_022948301.1 (uncharacterized protein LOC111452018 isoform X1 [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 331 RTTLEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 374

[Close]

BLAST of Spg038945 vs. NCBI nr
Match: XP_022998162.1 (uncharacterized protein LOC111492892 isoform X1 [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 325 RTALEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 368

[Close]

BLAST of Spg038945 vs. NCBI nr
Match: KAG7036698.1 (fmt, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 364 RTALEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 407

[Close]

BLAST of Spg038945 vs. NCBI nr
Match: XP_022948302.1 (uncharacterized protein LOC111452018 isoform X2 [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 330 RTTLEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 373

[Close]

BLAST of Spg038945 vs. NCBI nr
Match: XP_022998163.1 (uncharacterized protein LOC111492892 isoform X2 [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 324 RTALEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 367

[Close]

BLAST of Spg038945 vs. ExPASy TrEMBL
Match: A0A6J1K752 (Methionyl-tRNA formyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492892 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 325 RTALEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 368

[Close]

BLAST of Spg038945 vs. ExPASy TrEMBL
Match: A0A6J1KG07 (Methionyl-tRNA formyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492892 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 324 RTALEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 367

[Close]

BLAST of Spg038945 vs. ExPASy TrEMBL
Match: A0A6J1G8W6 (Methionyl-tRNA formyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111452018 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 331 RTTLEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 374

[Close]

BLAST of Spg038945 vs. ExPASy TrEMBL
Match: A0A6J1G8T3 (Methionyl-tRNA formyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111452018 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  RSRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           R+  EVLEVQLPGKKVVSAGAFWNGMQGK+LKKFDE+KHFSHVS
Sbjct: 330 RTTLEVLEVQLPGKKVVSAGAFWNGMQGKRLKKFDETKHFSHVS 373

[Close]

BLAST of Spg038945 vs. ExPASy TrEMBL
Match: A0A6J1CQ38 (Methionyl-tRNA formyltransferase OS=Momordica charantia OX=3673 GN=LOC111013259 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 32  SRFEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDESKHFSHVS 75
           S  EVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDE KHFSHVS
Sbjct: 330 SALEVLEVQLPGKKVVSAGAFWNGMQGKKLKKFDERKHFSHVS 372

[Close]

BLAST of Spg038945 vs. TAIR 10
Match: AT1G66520.1 (formyltransferase, putative )

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 35  EVLEVQLPGKKVVSAGAFWNGMQGKKLKK 64
           EVLEVQLPGKK ++A AFWNG++G+KLKK
Sbjct: 326 EVLEVQLPGKKAINAAAFWNGLRGQKLKK 354

The following BLAST results are available for this feature:

BLAST of Spg038945 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948301.1	6.2e-13	88.64	uncharacterized protein LOC111452018 isoform X1 [Cucurbita moschata]	[more]
XP_022998162.1	6.2e-13	88.64	uncharacterized protein LOC111492892 isoform X1 [Cucurbita maxima]	[more]
KAG7036698.1	6.2e-13	88.64	fmt, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022948302.1	6.2e-13	88.64	uncharacterized protein LOC111452018 isoform X2 [Cucurbita moschata]	[more]
XP_022998163.1	6.2e-13	88.64	uncharacterized protein LOC111492892 isoform X2 [Cucurbita maxima]	[more]

BLAST of Spg038945 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg038945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K752	3.0e-13	88.64	Methionyl-tRNA formyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492892 PE=...	[more]
A0A6J1KG07	3.0e-13	88.64	Methionyl-tRNA formyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492892 PE=...	[more]
A0A6J1G8W6	3.0e-13	88.64	Methionyl-tRNA formyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111452018 P...	[more]
A0A6J1G8T3	3.0e-13	88.64	Methionyl-tRNA formyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111452018 P...	[more]
A0A6J1CQ38	3.9e-13	93.02	Methionyl-tRNA formyltransferase OS=Momordica charantia OX=3673 GN=LOC111013259 ...	[more]

BLAST of Spg038945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66520.1	2.4e-07	75.86	formyltransferase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038945.1	Spg038945.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071951	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
biological_process	GO:0006413	translational initiation
molecular_function	GO:0004479	methionyl-tRNA formyltransferase activity