Spg038937 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038937
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Phytocyanin domain-containing protein
Location	scaffold12: 2786133 .. 2786363 (-)
RNA-Seq Expression	Spg038937
Synteny	Spg038937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAACCACACAGAACCTCCAATTTCGAGTACCGAAACAGCTCAGTTTTGGTGGTGAACTACACGAATTACCGAGACTGTATCGTCTCGGATCCGATCGCGAAGTTCGACAATGGAAGCGGCGGCAGTACGATTTTTCGATTGGATCGAGATGGATATTTCTTTTTCATCAGTGGAGATACAGAGCATTGTGTGAACGGGCTTACTGGCGGTGCAAGTGATGGATGA

mRNA sequence

ATGTCTGAACCACACAGAACCTCCAATTTCGAGTACCGAAACAGCTCAGTTTTGGTGGTGAACTACACGAATTACCGAGACTGTATCGTCTCGGATCCGATCGCGAAGTTCGACAATGGAAGCGGCGGCAGTACGATTTTTCGATTGGATCGAGATGGATATTTCTTTTTCATCAGTGGAGATACAGAGCATTGTGTGAACGGGCTTACTGGCGGTGCAAGTGATGGATGA

Coding sequence (CDS)

ATGTCTGAACCACACAGAACCTCCAATTTCGAGTACCGAAACAGCTCAGTTTTGGTGGTGAACTACACGAATTACCGAGACTGTATCGTCTCGGATCCGATCGCGAAGTTCGACAATGGAAGCGGCGGCAGTACGATTTTTCGATTGGATCGAGATGGATATTTCTTTTTCATCAGTGGAGATACAGAGCATTGTGTGAACGGGCTTACTGGCGGTGCAAGTGATGGATGA

Protein sequence

MSEPHRTSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCVNGLTGGASDG

Homology

[Close]

BLAST of Spg038937 vs. NCBI nr
Match: XP_038899661.1 (mavicyanin-like [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 3.3e-22
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  FEYRN SVLVVNYTNYRDCIV+DPIAKF+NGSGG TIFRLDRDG F+FISG+TEHC+
Sbjct: 60  TLYFEYRNDSVLVVNYTNYRDCIVTDPIAKFENGSGGGTIFRLDRDGDFYFISGNTEHCL 119

Query: 67  NG 69
           NG
Sbjct: 120 NG 121

[Close]

BLAST of Spg038937 vs. NCBI nr
Match: XP_022941044.1 (mavicyanin-like [Cucurbita moschata])

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-21
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+YRN SVLVVNYTNYRDCI+SDP+AKFDNGSG  T+FRLDRDG F+FISGD EHC 
Sbjct: 66  TLYFKYRNDSVLVVNYTNYRDCIISDPVAKFDNGSGNGTVFRLDRDGDFYFISGDREHCE 125

Query: 67  NG 69
           NG
Sbjct: 126 NG 127

[Close]

BLAST of Spg038937 vs. NCBI nr
Match: KAG6607745.1 (Early nodulin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-21
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+YRN SVLVVNYTNYRDCI+SDP+AKFDNGSG  T+FRLDRDG F+FISGD EHC 
Sbjct: 66  TLYFKYRNDSVLVVNYTNYRDCIISDPVAKFDNGSGNGTVFRLDRDGDFYFISGDREHCE 125

Query: 67  NG 69
           NG
Sbjct: 126 NG 127

[Close]

BLAST of Spg038937 vs. NCBI nr
Match: XP_022981622.1 (mavicyanin-like [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F YRN SVLVVNYTNYRDCI+SDP+AKFDNGSG  T+FRLDRDG F+FISGD EHC 
Sbjct: 66  TLYFMYRNDSVLVVNYTNYRDCIISDPVAKFDNGSGNGTVFRLDRDGDFYFISGDREHCE 125

Query: 67  NG 69
           NG
Sbjct: 126 NG 127

[Close]

BLAST of Spg038937 vs. NCBI nr
Match: KAG7037323.1 (Early nodulin-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F YRN SVLVVNYTNYRDCI+SDP+AKFDNGSG  T+FRLDRDG F+FISGD EHC 
Sbjct: 66  TLYFMYRNDSVLVVNYTNYRDCIISDPVAKFDNGSGNGTVFRLDRDGDFYFISGDREHCE 125

Query: 67  NG 69
           NG
Sbjct: 126 NG 127

[Close]

BLAST of Spg038937 vs. ExPASy Swiss-Prot
Match: Q5JNJ5 (Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ENODL1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 16  SVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCVNG 69
           SVL V   ++  C   +P+ + ++ + G ++FR DR G FFFISGD + C  G
Sbjct: 73  SVLQVTEGDFDTCSTGNPVQRLEDVAAGRSVFRFDRSGPFFFISGDEDRCQKG 125

[Close]

BLAST of Spg038937 vs. ExPASy Swiss-Prot
Match: Q9SK27 (Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 7.2e-04
Identity = 24/59 (40.68%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 10  FEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCVNG 69
           +E    SVL V    Y  C  ++P+A   N + G T  +LDR G F+FISG   HC  G
Sbjct: 69  YESGKDSVLEVTKEAYNSCNTTNPLA---NYTDGETKVKLDRSGPFYFISGANGHCEKG 124

[Close]

BLAST of Spg038937 vs. ExPASy TrEMBL
Match: A0A6J1FM27 (mavicyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111446449 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+YRN SVLVVNYTNYRDCI+SDP+AKFDNGSG  T+FRLDRDG F+FISGD EHC 
Sbjct: 66  TLYFKYRNDSVLVVNYTNYRDCIISDPVAKFDNGSGNGTVFRLDRDGDFYFISGDREHCE 125

Query: 67  NG 69
           NG
Sbjct: 126 NG 127

[Close]

BLAST of Spg038937 vs. ExPASy TrEMBL
Match: A0A6J1IUH6 (mavicyanin-like OS=Cucurbita maxima OX=3661 GN=LOC111480686 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-21
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F YRN SVLVVNYTNYRDCI+SDP+AKFDNGSG  T+FRLDRDG F+FISGD EHC 
Sbjct: 66  TLYFMYRNDSVLVVNYTNYRDCIISDPVAKFDNGSGNGTVFRLDRDGDFYFISGDREHCE 125

Query: 67  NG 69
           NG
Sbjct: 126 NG 127

[Close]

BLAST of Spg038937 vs. ExPASy TrEMBL
Match: A0A0A0K3H5 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G121850 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-18
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T +FEYRN S+L+VNYTNYRDC V DPIAKF+NGS G TIF LDR+G F+FISG+ EHCV
Sbjct: 56  TLHFEYRNDSLLLVNYTNYRDCTVLDPIAKFENGSRGGTIFSLDRNGDFYFISGNREHCV 115

Query: 67  NG 69
            G
Sbjct: 116 KG 117

[Close]

BLAST of Spg038937 vs. ExPASy TrEMBL
Match: A0A6J1CEK4 (mavicyanin-like OS=Momordica charantia OX=3673 GN=LOC111010506 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.5e-15
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+YRN SVLVVNY +YRDC V+DPIA+FDNGSG   +FRLDR G F+FISG+ E+CV
Sbjct: 66  TLYFKYRNDSVLVVNYADYRDCAVADPIARFDNGSG--AVFRLDRGGDFYFISGERENCV 125

Query: 67  NG 69
            G
Sbjct: 126 AG 125

[Close]

BLAST of Spg038937 vs. ExPASy TrEMBL
Match: A0A2N9HI80 (Phytocyanin domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39517 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+Y+N SVLVVNYT Y++C+VS+PI+KF++   G+T+ R DR GYF+FISG  +HC 
Sbjct: 65  TLYFKYQNDSVLVVNYTEYKNCVVSNPISKFED---GNTVLRFDRYGYFYFISGQPDHCN 123

Query: 67  NG 69
            G
Sbjct: 125 AG 123

[Close]

BLAST of Spg038937 vs. TAIR 10
Match: AT1G79800.1 (early nodulin-like protein 7 )

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-08
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 9   NFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCVNG 68
           +F Y   SV+ V+   +  C  SDPI  FDN   G++ F LDR G F+FISG  +HC +G
Sbjct: 69  SFVYDKDSVMEVDKWGFYHCNGSDPITAFDN---GNSTFDLDRPGLFYFISGSNQHCTSG 125

[Close]

BLAST of Spg038937 vs. TAIR 10
Match: AT3G18590.1 (early nodulin-like protein 5 )

HSP 1 Score: 50.4 bits (119), Expect = 7.2e-07
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+Y   SVLVV+   Y+ C  + P    +N     T+F+LDR G F+FISG + HC 
Sbjct: 61  TLRFKYTKDSVLVVSEEEYKKCKATKPQLYSNN---EDTVFKLDRPGLFYFISGVSGHCE 119

Query: 67  NG 69
            G
Sbjct: 121 KG 119

[Close]

BLAST of Spg038937 vs. TAIR 10
Match: AT1G48940.1 (early nodulin-like protein 6 )

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 7   TSNFEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCV 66
           T  F+Y+  SVLVV    Y+ C  + P    ++     T+F+LDR G F+FISG + HC 
Sbjct: 60  TIRFKYKKDSVLVVTEDEYKKCQTTKPELYSNH---DDTVFKLDRPGLFYFISGVSGHCE 118

Query: 67  NG 69
            G
Sbjct: 120 QG 118

[Close]

BLAST of Spg038937 vs. TAIR 10
Match: AT5G53870.1 (early nodulin-like protein 1 )

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 14  NSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCVNG 69
           + SV  V   ++  C V +PI  F+N   G ++  LDR G F+FISG+ +HC  G
Sbjct: 69  SDSVQQVMKADFDGCNVRNPIKNFEN---GESVVTLDRSGAFYFISGNQDHCQKG 120

[Close]

BLAST of Spg038937 vs. TAIR 10
Match: AT5G57920.1 (early nodulin-like protein 10 )

HSP 1 Score: 44.7 bits (104), Expect = 3.9e-05
Identity = 24/59 (40.68%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 10  FEYRNSSVLVVNYTNYRDCIVSDPIAKFDNGSGGSTIFRLDRDGYFFFISGDTEHCVNG 69
           +   N SVL V  T+Y  C  S+PI  + +   G T   L R G F+FISG+  HC  G
Sbjct: 61  YNAENDSVLQVRQTDYERCDRSEPIRGYKD---GHTNIELKRSGPFYFISGEEGHCQRG 116

The following BLAST results are available for this feature:

BLAST of Spg038937 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899661.1	3.3e-22	83.87	mavicyanin-like [Benincasa hispida]	[more]
XP_022941044.1	4.8e-21	79.03	mavicyanin-like [Cucurbita moschata]	[more]
KAG6607745.1	4.8e-21	79.03	Early nodulin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022981622.1	1.1e-20	79.03	mavicyanin-like [Cucurbita maxima]	[more]
KAG7037323.1	1.1e-20	79.03	Early nodulin-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Spg038937 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5JNJ5	1.7e-05	39.62	Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ENODL1 ...	[more]
Q9SK27	7.2e-04	40.68	Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 S...	[more]

BLAST of Spg038937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FM27	2.3e-21	79.03	mavicyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111446449 PE=4 SV=1	[more]
A0A6J1IUH6	5.2e-21	79.03	mavicyanin-like OS=Cucurbita maxima OX=3661 GN=LOC111480686 PE=4 SV=1	[more]
A0A0A0K3H5	5.4e-18	72.58	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G121850...	[more]
A0A6J1CEK4	9.5e-15	67.74	mavicyanin-like OS=Momordica charantia OX=3673 GN=LOC111010506 PE=4 SV=1	[more]
A0A2N9HI80	1.3e-11	56.45	Phytocyanin domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39...	[more]

BLAST of Spg038937 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79800.1	2.9e-08	45.00	early nodulin-like protein 7	[more]
AT3G18590.1	7.2e-07	41.94	early nodulin-like protein 5	[more]
AT1G48940.1	1.2e-06	40.32	early nodulin-like protein 6	[more]
AT5G53870.1	3.0e-05	40.00	early nodulin-like protein 1	[more]
AT5G57920.1	3.9e-05	40.68	early nodulin-like protein 10	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 10..68 e-value: 4.9E-9 score: 36.1
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 1..76 score: 13.953789
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 4..70 e-value: 5.9E-11 score: 44.2
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 10..69
None	No IPR available	PANTHER	PTHR33021:SF14	EARLY NODULIN-LIKE PROTEIN 2	coord: 9..68
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 9..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038937.1	Spg038937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000166	nucleotide binding