Spg038001 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038001
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProlamin_like domain-containing protein
Locationscaffold12: 40440865 .. 40441248 (-)
RNA-Seq ExpressionSpg038001
SyntenySpg038001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAATCAGTTCGATTTTTCGGATTCTTCCTCTTAGCCCTAGCGATTTCATCGTCGATTCAGTCCGCATTCGCTCTCAGGAAGATTCCGGAGGCAATTCATTCAGCCGATTGGTCGGCGGCGGCCTGTTGGGACGCGATAAACGCGGTGGTAGGGTGCCAGGACGAGATCGACATGGCTATGAAGAGCAATGAGATTGAGGTGAGCTACGATTGTTGCAGAGTGATACTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTTTCATCTGGCGGAGAGTTTTCGCAGGAGATTAGCGGTGCGGTGAACGAATATTGCGATGGAATGGGAATTACTCCGCCGGTGGTTGAGTCGGAGGATAAAGCCAAAGAAAATTGA

mRNA sequence

ATGTTGAAATCAGTTCGATTTTTCGGATTCTTCCTCTTAGCCCTAGCGATTTCATCGTCGATTCAGTCCGCATTCGCTCTCAGGAAGATTCCGGAGGCAATTCATTCAGCCGATTGGTCGGCGGCGGCCTGTTGGGACGCGATAAACGCGGTGGTAGGGTGCCAGGACGAGATCGACATGGCTATGAAGAGCAATGAGATTGAGGTGAGCTACGATTGTTGCAGAGTGATACTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTTTCATCTGGCGGAGAGTTTTCGCAGGAGATTAGCGGTGCGGTGAACGAATATTGCGATGGAATGGGAATTACTCCGCCGGTGGTTGAGTCGGAGGATAAAGCCAAAGAAAATTGA

Coding sequence (CDS)

ATGTTGAAATCAGTTCGATTTTTCGGATTCTTCCTCTTAGCCCTAGCGATTTCATCGTCGATTCAGTCCGCATTCGCTCTCAGGAAGATTCCGGAGGCAATTCATTCAGCCGATTGGTCGGCGGCGGCCTGTTGGGACGCGATAAACGCGGTGGTAGGGTGCCAGGACGAGATCGACATGGCTATGAAGAGCAATGAGATTGAGGTGAGCTACGATTGTTGCAGAGTGATACTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTTTCATCTGGCGGAGAGTTTTCGCAGGAGATTAGCGGTGCGGTGAACGAATATTGCGATGGAATGGGAATTACTCCGCCGGTGGTTGAGTCGGAGGATAAAGCCAAAGAAAATTGA

Protein sequence

MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDMAMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVVESEDKAKEN
Homology
BLAST of Spg038001 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 105/124 (84.68%), Postives = 112/124 (90.32%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQ--SAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEI 60
           MLKSVRF G FLLALAISSSIQ  SAFALR IPEA++SADWSAA CWDAI AV GCQDEI
Sbjct: 1   MLKSVRFVG-FLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVV 120
           DMAMKSNEIEVS DCCR ILHGLP+KCAA VFSSGGEFS EISGAVNEYCDGMGITPPV+
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ESED 123
           E+++
Sbjct: 121 ETDE 123

BLAST of Spg038001 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDM 60
           M KS RFFGFFL ALAISSS QSAFA+RKI EA++SAD     CWDAINAV GCQ++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVVES 120
           AMKSNEIEVSYDCC+VILHG+PEKCAAVVFSSGGEFS E+SGAVNEYCDGMGITPPV+E+
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KAKEN 128
           ED K  EN
Sbjct: 121 EDTKVDEN 123

BLAST of Spg038001 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 99/118 (83.90%), Postives = 104/118 (88.14%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDM 60
           M KSVRFFGFFLLAL ISS I SAFALRK P+AI SADWS AAC DA+NAV GCQ EIDM
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVV 119
           A+ SNEIEVSY+CCRVILHGLPEKCAAVVFSSGGE S EISGAV EYCDGMGITPPV+
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

BLAST of Spg038001 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 68  EVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVVESED-KAKE 127
           +VSYDCC+VILHG+PEKCAAVVFSSGGEFS ++SGAVNEYCDGMGITPPV+E+ED K +E
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

BLAST of Spg038001 vs. NCBI nr
Match: KAB2067183.1 (hypothetical protein ES319_A09G209500v1 [Gossypium barbadense] >KAG4184881.1 hypothetical protein ERO13_A09G198350v2 [Gossypium hirsutum] >TYH03608.1 hypothetical protein ES288_A09G233000v1 [Gossypium darwinii] >TYI11744.1 hypothetical protein ES332_A09G228100v1 [Gossypium tomentosum])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 12  LLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDMAMKSNEIEVSY 71
           +LALA + +I  A ++    E  H  D     CW  IN   GC+ EI  ++   +I++SY
Sbjct: 18  ILALAFAIAITPALSVVGWDER-HMPD--PRVCWAQINKANGCEHEIYASLVKKKIKLSY 77

Query: 72  DCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPP 117
            CC  +  G+  KC   +F+  G FS E    +  YC  +G+T P
Sbjct: 78  GCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVTLP 117

BLAST of Spg038001 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.5e-49
Identity = 105/124 (84.68%), Postives = 112/124 (90.32%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQ--SAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEI 60
           MLKSVRF G FLLALAISSSIQ  SAFALR IPEA++SADWSAA CWDAI AV GCQDEI
Sbjct: 1   MLKSVRFVG-FLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVV 120
           DMAMKSNEIEVS DCCR ILHGLP+KCAA VFSSGGEFS EISGAVNEYCDGMGITPPV+
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ESED 123
           E+++
Sbjct: 121 ETDE 123

BLAST of Spg038001 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.9e-48
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDM 60
           M KS RFFGFFL ALAISSS QSAFA+RKI EA++SAD     CWDAINAV GCQ++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVVES 120
           AMKSNEIEVSYDCC+VILHG+PEKCAAVVFSSGGEFS E+SGAVNEYCDGMGITPPV+E+
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KAKEN 128
           ED K  EN
Sbjct: 121 EDTKVDEN 123

BLAST of Spg038001 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.0e-47
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDM 60
           M KSVRFFGFFL  LA SSS  SAFA+RKI EA++S+D     CWDAINAV GCQ+EID 
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPPVVES 120
           AMKSNEIEVSYDCC+VILHG+PEKCAAVVFSSGGEFS ++SGAVNEYCDGMGITPPV+E+
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KAKEN 128
           ED K +EN
Sbjct: 121 EDTKVEEN 123

BLAST of Spg038001 vs. ExPASy TrEMBL
Match: A0A5D2P8P3 (Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G228100v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 12  LLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDMAMKSNEIEVSY 71
           +LALA + +I  A ++    E  H  D     CW  IN   GC+ EI  ++   +I++SY
Sbjct: 18  ILALAFAIAITPALSVVGWDER-HMPD--PRVCWAQINKANGCEHEIYASLVKKKIKLSY 77

Query: 72  DCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPP 117
            CC  +  G+  KC   +F+  G FS E    +  YC  +G+T P
Sbjct: 78  GCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVTLP 117

BLAST of Spg038001 vs. ExPASy TrEMBL
Match: A0A5J5UI71 (Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G209500v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 12  LLALAISSSIQSAFALRKIPEAIHSADWSAAACWDAINAVVGCQDEIDMAMKSNEIEVSY 71
           +LALA + +I  A ++    E  H  D     CW  IN   GC+ EI  ++   +I++SY
Sbjct: 18  ILALAFAIAITPALSVVGWDER-HMPD--PRVCWAQINKANGCEHEIYASLVKKKIKLSY 77

Query: 72  DCCRVILHGLPEKCAAVVFSSGGEFSQEISGAVNEYCDGMGITPP 117
            CC  +  G+  KC   +F+  G FS E    +  YC  +G+T P
Sbjct: 78  GCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVTLP 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022931003.11.6e-4884.68uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... [more]
KAA0038539.11.0e-4779.69hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... [more]
KAG6571831.11.5e-4683.90hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652857.11.0e-2081.97hypothetical protein Csa_023774, partial [Cucumis sativus][more]
KAB2067183.12.3e-0433.33hypothetical protein ES319_A09G209500v1 [Gossypium barbadense] >KAG4184881.1 hyp... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EX447.5e-4984.68uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
A0A5A7TB284.9e-4879.69Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0LEG07.0e-4777.34Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... [more]
A0A5D2P8P31.1e-0433.33Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES33... [more]
A0A5J5UI711.1e-0433.33Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 44..109
e-value: 6.9E-8
score: 32.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038001.1Spg038001.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity