Spg037928 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037928
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionouter envelope membrane protein 7-like
Locationscaffold12: 43292258 .. 43293257 (-)
RNA-Seq ExpressionSpg037928
SyntenySpg037928
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAAACCATCGGGGACCAAGCAAGCATTTGTCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGAGCCCGCTCCGCCATGGACAACTCCGATCCGGCTCGGGATCCCGACGACCTTGTCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGCTTAAATTGCAATTTCTAGGTATGAGTATGACAGGGAGGTCTGATGGAATAGTTTGTCGCCATCATGTTGTGCCTGTAAAAAGTGGAATTTTAGATCTTTTCGCTCCGTATCGTATAAGGTCAGTAGTAGACCATTTTAATTGAATTAAAGTGATTCAGCTTTTACTTTTATAAACCTGGCCTCCCGGCGCTTTCTGAATGTGCTTGATTTGCTAATCAATTCCACAACTTCCTCCTGTAAATCTAACTACAAGCTTGGAACTAAGGAGTGTTCTCATTACCTATTCGATTAATGGTTTAAAAAAATTAAGGTGTTTAACTTGACTAAAGCCTAGTTTTTTACATGATCATGTTATAGTTTTGTCAAACATTATTCAGTGGCCTAGCTGCATACCCACGCCCAGCTGTCATTTAGTGATACAAGTCTTCTGAATAGCGGAAGGAAACACCTAGAGGGTGAAGTGTACAAAACCTTCATTTTTACATGATGCTTTGTGTGTAAAAAGAGACTGAAAAGTCTGATGTAATTGGGTTTGTTAAACTACAATCCCTTGGCCTATTTAAGTTTTGAAAACCACCTCCATCATTTTATTTGTCTTCTCGTTTCCTTTAATTTCTTTGTGAAGGAGGGTGATTCATCCGTTGGGAGAAAAAGGATGGACTGGAGAGAGAGCAATGCAAATAGTAGTGGCAGAATTGTTTAATAACAGAATCAAAGCGAGAGTCTCCGAAGCTTTCTGTCTTCGCATACCCATTAGGGTATTGCGTCCAGAAAAAAAGAAAAAGAAATAA

mRNA sequence

ATGGGAAAGAAACCATCGGGGACCAAGCAAGCATTTGTCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGAGCCCGCTCCGCCATGGACAACTCCGATCCGGCTCGGGATCCCGACGACCTTGTCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAATCTTTTCGCTCCGTATCGTATAAGGAGGGTGATTCATCCGTTGGGAGAAAAAGGATGGACTGGAGAGAGAGCAATGCAAATAGTAGTGGCAGAATTGTTTAATAACAGAATCAAAGCGAGAGTCTCCGAAGCTTTCTGTCTTCGCATACCCATTAGGGTATTGCGTCCAGAAAAAAAGAAAAAGAAATAA

Coding sequence (CDS)

ATGGGAAAGAAACCATCGGGGACCAAGCAAGCATTTGTCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGAGCCCGCTCCGCCATGGACAACTCCGATCCGGCTCGGGATCCCGACGACCTTGTCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAATCTTTTCGCTCCGTATCGTATAAGGAGGGTGATTCATCCGTTGGGAGAAAAAGGATGGACTGGAGAGAGAGCAATGCAAATAGTAGTGGCAGAATTGTTTAATAACAGAATCAAAGCGAGAGTCTCCGAAGCTTTCTGTCTTCGCATACCCATTAGGGTATTGCGTCCAGAAAAAAAGAAAAAGAAATAA

Protein sequence

MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQRPSDDDQNLFAPYRIRRVIHPLGEKGWTGERAMQIVVAELFNNRIKARVSEAFCLRIPIRVLRPEKKKKK
Homology
BLAST of Spg037928 vs. NCBI nr
Match: XP_038888886.1 (outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888888.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888889.1 outer envelope membrane protein 7-like [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSGTKQAF VFGALALGWLAIEMAFKPFLD+ARSAMDNSDPA+DPDDLVDNQSDQ 
Sbjct: 1  MGKKPSGTKQAFFVFGALALGWLAIEMAFKPFLDKARSAMDNSDPAQDPDDLVDNQSDQS 60

Query: 61 PSDDDQNLFA 71
          PSDDDQ+  A
Sbjct: 61 PSDDDQSTTA 70

BLAST of Spg037928 vs. NCBI nr
Match: XP_022155586.1 (outer envelope membrane protein 7-like [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSGTKQAFV+FGALALGWLAIEMAFKPFLD+ARSAMD SDP RDPDDLVDN SD R
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 PSDDDQNLFA 71
          PSDDD++  A
Sbjct: 61 PSDDDESTTA 70

BLAST of Spg037928 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-22
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1   MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
           MGKK S TKQA +VFGALALGWLAIEMAFKP LDR RSAMDN+DPARD DDL DNQSDQR
Sbjct: 173 MGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQR 232

Query: 61  PSDDDQN 68
           PSDDDQ+
Sbjct: 233 PSDDDQS 239

BLAST of Spg037928 vs. NCBI nr
Match: KAG7036368.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-22
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1   MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
           MGKK S TKQA +VFGALALGWLAIEMAFKP LDR RSAMDN+DPARD DDL DNQSDQR
Sbjct: 203 MGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQR 262

Query: 61  PSDDDQN 68
           PSDDDQ+
Sbjct: 263 PSDDDQS 269

BLAST of Spg037928 vs. NCBI nr
Match: XP_023553591.1 (outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-21
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLD+ARSAMDNSDP RDPDDL+D QSD  
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDQNLFA 71
           SDDD++  A
Sbjct: 61 QSDDDRSTTA 70

BLAST of Spg037928 vs. ExPASy Swiss-Prot
Match: Q9SVC4 (Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 4  KPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDD 52
          K SG KQA VV  A+ALGWLAIE+AFKPFLD+ RS++D SDP +DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A6J1DS29 (outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC111022685 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSGTKQAFV+FGALALGWLAIEMAFKPFLD+ARSAMD SDP RDPDDLVDN SD R
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 PSDDDQNLFA 71
          PSDDD++  A
Sbjct: 61 PSDDDESTTA 70

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A6J1HGS4 (outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111463949 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLD+ARSAMDNSDP RDPDD +D QSD  
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60

Query: 61 PSDDDQNLFA 71
           SDDD++  A
Sbjct: 61 QSDDDRSTTA 70

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A6J1HUQ5 (outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111467002 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.8e-21
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSG+KQAF + GALALGWLAIE+AFKPFLD+ARSAMDNSDP RDPDDL+D QSD  
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEIAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDQN 68
           SDDD++
Sbjct: 61 QSDDDRS 67

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A5A7URM9 (6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00570 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.8e-21
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          M K+PSGT QAF VF ALA+GWLAIEMAFKPFLD+ARSAMD SDPARDPD+LVDNQSD  
Sbjct: 1  MSKRPSGTTQAFFVFSALAMGWLAIEMAFKPFLDKARSAMDKSDPARDPDELVDNQSDHT 60

Query: 61 PSDDDQN 68
           SDDDQ+
Sbjct: 61 SSDDDQS 67

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A0A0KJE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          M  K S TKQAF VFGALA+GWLAIEMAFKP L +ARSAMD SDPARDPD+L+D+ S   
Sbjct: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDHTS--- 60

Query: 61 PSDDDQN 68
           SDDD+N
Sbjct: 61 -SDDDRN 63

BLAST of Spg037928 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 4  KPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDD 52
          K SG KQA VV  A+ALGWLAIE+AFKPFLD+ RS++D SDP +DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

BLAST of Spg037928 vs. TAIR 10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-06
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 3  KKPSGTKQ-AFVVFGALALGWLAIEMAFKPFLDRARSAMDNSD 45
          +KP+G KQ A VV G LA+GWLAIE+ FKP   +  S+ D SD
Sbjct: 15 EKPTGKKQTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSD 57

BLAST of Spg037928 vs. TAIR 10
Match: AT2G34585.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 9.6e-04
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0

Query: 11 AFVVFGALALGWLAIEMAFKPFLDRARSAMDNS-DPARDPDDL-VDNQSDQR 61
          A +    + LGW+ IE+A KP L+  R A+D S +P  DPDD  VD+ SD R
Sbjct: 7  AVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVR 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888886.11.1e-2590.00outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer... [more]
XP_022155586.13.5e-2485.71outer envelope membrane protein 7-like [Momordica charantia][more]
KAG6606428.19.6e-2285.07Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7036368.19.6e-2285.07Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. ar... [more]
XP_023553591.12.8e-2178.57outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9SVC45.5e-1270.83Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A6J1DS291.7e-2485.71outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1HGS46.7e-2177.14outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1HUQ58.8e-2179.10outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC1114670... [more]
A0A5A7URM98.8e-2180.606.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa ... [more]
A0A0A0KJE97.2e-1571.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52420.13.9e-1370.83outer envelope membrane protein 7 [more]
AT3G63160.16.0e-0655.81FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G34585.19.6e-0446.15unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61
NoneNo IPR availablePANTHERPTHR33982:SF5OUTER ENVELOPE MEMBRANE PROTEIN 7coord: 4..62
IPR038944Outer envelope membrane protein 7-likePANTHERPTHR33982OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATEDcoord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037928.1Spg037928.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031359 integral component of chloroplast outer membrane