Spg037863 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037863
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 38846507 .. 38847666 (-)
RNA-Seq ExpressionSpg037863
SyntenySpg037863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGTGGAGAGGAGTAAAAGCTAGGAAAATGGTGATTGAGAAAGAAACGGTGGTTCGGGCCCGTGACTGCCTTGTTGCAGCGGCTAGATTAGATAATCCTAAAGCCTTTTGGTGGAGAAGAAGATTGGATGTAGCGGTCATCTTCTTCCAAGTGCAAGAAAACGCAAGAGGTAGATACGGACTCCTATCTCAAGAACTTGTCAAAGGAAAAAGATCAACCCTCCATATTCCAAAAGGGTTTAAAGGAAATGGATGGTCTCTTTTGGCTGGCAATATGGCGGGCTTGTTATTCCCACCGGAGGATTCTAAGAGTAACAAGGAAATAAAGATTCTCAAAGGGGATGAGCAGAAAATGAGGGAGAATGTGACAGGGAAGTGAGTTCCGAAGGTAGAAGAAGAGGGAGCGGCCAAAGGAGAGGAGAAAGAGAGTGTCGGGGAGTTCGATTTCGAGTTTGATTGTGTTTCCACGGTTATTAACGAGAGATTCAGAGTAGGATCCAAATGGTAGTCCATTTTAGAGAGAATTCAAAGTTCAACGGATGAAGGGGTGATCTTTAAACTGTTATGTGCTAACCTTGCAATAGGTATATGCGGAAATCCAACGAAGATGATTAAACAAGTCGGAGATGGGAATCAAGATAACTCTAGGGATTTTCATATTCACAAATGGAATTTGAAAGTTATTGCAGAAGGTCAACGTCTTTCTTTCTCAGGAGGATGGGTCACGGTTTTGGTCATTCCTCCCTTTCTCTGAACCAGAAAATTTATAGCAATGGTGGCAGAGCTATGCAGGGGAATCAATGAGGAAAAGGAATTCAAAGGAGAAGAAATCTTGATGGAGGTTTGTTTTAAAGCATGAGGACATCCTGATGGCTTTATCCTAGTTGATGTATACCTTCAGCACGACGAGTTTTTCTTCCAGTGTGATTTATCACCGGCCAACTGTCGGAGTTGGAGGAAACGGTCAATAAAAAACAATTGATGGGTATGGAGATGGTGACATTTCATCGGCCAAAAGTGGTGTCTGTAGCAGGGCTGCAAATTCATAAGAAAGTAGGTCACATGAAGGGGTTGATGACAAGCAGCAATTTGAATACTTTAGAGACCTCTCCTAGTGGCCTAAAAGTAGTAAACCAGAAGCTAAAGCCCAGATAG

mRNA sequence

ATGGAGGAGTGGAGAGGAGTAAAAGCTAGGAAAATGGTGATTGAGAAAGAAACGGTGGTTCGGGCCCGTGACTGCCTTGTTGCAGCGGCTAGATTAGATAATCCTAAAGCCTTTTGGTGGAGAAGAAGATTGGATGTAGCGGTCATCTTCTTCCAAGTGCAAGAAAACGCAAGAGGTAGATACGGACTCCTATCTCAAGAACTTGTCAAAGGAAAAAGATCAACCCTCCATATTCCAAAAGGGTTTAAAGGAAATGGATGGTCTCTTTTGGCTGGCAATATGGCGGGCTTGTTATTCCCACCGGAGGATTCTAAGAGTAACAAGGAAATAAAGATTCTCAAAGGGGATGAGCAGAAAATGAGGGAGAATGTGACAGGGAAAAAATTTATAGCAATGGTGGCAGAGCTATGCAGGGGAATCAATGAGGAAAAGGAATTCAAAGGAGAAGAAATCTTGATGGAGTTGGAGGAAACGGTCAATAAAAAACAATTGATGGGTATGGAGATGGTGACATTTCATCGGCCAAAAGTGGTGTCTGTAGCAGGGCTGCAAATTCATAAGAAAGTAGGTCACATGAAGGGGTTGATGACAAGCAGCAATTTGAATACTTTAGAGACCTCTCCTAGTGGCCTAAAAGTAGTAAACCAGAAGCTAAAGCCCAGATAG

Coding sequence (CDS)

ATGGAGGAGTGGAGAGGAGTAAAAGCTAGGAAAATGGTGATTGAGAAAGAAACGGTGGTTCGGGCCCGTGACTGCCTTGTTGCAGCGGCTAGATTAGATAATCCTAAAGCCTTTTGGTGGAGAAGAAGATTGGATGTAGCGGTCATCTTCTTCCAAGTGCAAGAAAACGCAAGAGGTAGATACGGACTCCTATCTCAAGAACTTGTCAAAGGAAAAAGATCAACCCTCCATATTCCAAAAGGGTTTAAAGGAAATGGATGGTCTCTTTTGGCTGGCAATATGGCGGGCTTGTTATTCCCACCGGAGGATTCTAAGAGTAACAAGGAAATAAAGATTCTCAAAGGGGATGAGCAGAAAATGAGGGAGAATGTGACAGGGAAAAAATTTATAGCAATGGTGGCAGAGCTATGCAGGGGAATCAATGAGGAAAAGGAATTCAAAGGAGAAGAAATCTTGATGGAGTTGGAGGAAACGGTCAATAAAAAACAATTGATGGGTATGGAGATGGTGACATTTCATCGGCCAAAAGTGGTGTCTGTAGCAGGGCTGCAAATTCATAAGAAAGTAGGTCACATGAAGGGGTTGATGACAAGCAGCAATTTGAATACTTTAGAGACCTCTCCTAGTGGCCTAAAAGTAGTAAACCAGAAGCTAAAGCCCAGATAG

Protein sequence

MEEWRGVKARKMVIEKETVVRARDCLVAAARLDNPKAFWWRRRLDVAVIFFQVQENARGRYGLLSQELVKGKRSTLHIPKGFKGNGWSLLAGNMAGLLFPPEDSKSNKEIKILKGDEQKMRENVTGKKFIAMVAELCRGINEEKEFKGEEILMELEETVNKKQLMGMEMVTFHRPKVVSVAGLQIHKKVGHMKGLMTSSNLNTLETSPSGLKVVNQKLKPR
Homology
[Close]
BLAST of Spg037863 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-12
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0 

Query: 7   VKARKMVIEKE-------------TVVRARDCLVAAARLDNPKAFWWRRRLDVAVIFFQV 66
           VKARK+ IE+              T    RDCLV AA  +N   F W+RRL+ A+IFFQV
Sbjct: 17  VKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVF-WQRRLEFAIIFFQV 76

Query: 67  QENARGRYGLLSQELVKGKRSTLHIPKGFKGNGWSLLAGNMAGLL 99
            EN +GR+ +LS E  K +++ + IP+G +G+GW  LAG ++ LL
Sbjct: 77  LENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISALL 120

[Close]
BLAST of Spg037863 vs. ExPASy TrEMBL
Match: A0A5D3CQQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8046G00070 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.2e-13
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0 

Query: 7   VKARKMVIEKE-------------TVVRARDCLVAAARLDNPKAFWWRRRLDVAVIFFQV 66
           VKARK+ IE+              T    RDCLV AA  +N   F W+RRL+ A+IFFQV
Sbjct: 17  VKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVF-WQRRLEFAIIFFQV 76

Query: 67  QENARGRYGLLSQELVKGKRSTLHIPKGFKGNGWSLLAGNMAGLL 99
            EN +GR+ +LS E  K +++ + IP+G +G+GW  LAG ++ LL
Sbjct: 77  LENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISALL 120

[Close]
BLAST of Spg037863 vs. ExPASy TrEMBL
Match: A0A0A0KB99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136570 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.8e-12
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 0 

Query: 12 MVIEKETVVRARDCLVAAARLDNPKAFWWRRRLDVAVIFFQVQENARGRYGLLSQELVKG 71
          M ++  T    RDCL  AA  +NP+ FW RR L  A+IFFQV ENARGR+ +LS E  KG
Sbjct: 1  MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60

Query: 72 KRSTLHIPKGFKGNGWSLLAGNMAGLL 99
          K++ + I KG KG G    A  ++ LL
Sbjct: 61 KKTRIFISKGSKGKGRKSFAEEISVLL 87

[Close]
BLAST of Spg037863 vs. ExPASy TrEMBL
Match: A0A0A0LY03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 0 

Query: 1   MEEWRGVKARKMVIEKETVVRARDCLVAAARLDNPKAFWWRRRLDVAVIFFQVQENARGR 60
           +EE  G K  K+ ++  T+    D L AAA        W R++LD  +IFFQV EN   R
Sbjct: 10  IEERNGRKCGKLDLDLGTLTWVEDRLNAAADASFSMGSWQRKKLDFGIIFFQVLENIGRR 69

Query: 61  YGLLSQELVKGKRSTLHIPKGFKGNGWSLLA--------GNMAGLLFPP--EDSKSNKEI 120
           + ++S +  KG+++ + I +G + +GW  LA          +  LL  P     KS+ EI
Sbjct: 70  FTIISLDSFKGRKARVFISEGSRESGWRSLAREILNMGRREILALLLGPGIATQKSSNEI 129

Query: 121 KILKGDEQKMRE 123
           +  KG  +K +E
Sbjct: 130 QHPKGSTRKRKE 141

[Close]
BLAST of Spg037863 vs. ExPASy TrEMBL
Match: A0A0A0KWZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G626010 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 56 NARGRYGLLSQELVKGKRSTLHIPKGFKGNGWSLLAGNMAGLL 99
          N+RGR+ LLS E  KG++  + IP+G +G+GW +LAG ++G+L
Sbjct: 46 NSRGRFALLSLESFKGRKMRIFIPEGIRGSGWRMLAGEVSGVL 88

The following BLAST results are available for this feature:
BLAST of Spg037863 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14183.11.1e-1243.81hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa][more]
BLAST of Spg037863 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037863 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CQQ05.2e-1343.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB999.8e-1248.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136570 PE=4 SV=1[more]
A0A0A0LY035.6e-0732.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1[more]
A0A0A0KWZ99.8e-0448.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G626010 PE=4 SV=1[more]
BLAST of Spg037863 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037863.1Spg037863.1mRNA