Spg036910 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036910
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CDT1-like protein a, chloroplastic
Location	scaffold5: 46292132 .. 46295478 (+)
RNA-Seq Expression	Spg036910
Synteny	Spg036910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATTACAAAATTGGAAGAACTCGAACTAAATCGTTACAAATCAAAGTTCAGAAACTAAATTTTTACTTTTACGAAAGCTCAGGGACCAAAAGTGATTTAAAAAAAAATAATAATAAAAATAAAATAAATAAATAAATAATAATAATAAATAATAAATAAAATGGGTCACGTGCGAAACTAGAACAATTTCCCCACCCTTCATTTTCTCTCATTCAACTACAGCAGTCCTATGTTTTCTCTTCGCAACCGGAAGCACGGCTGCCTCGACAGAGGCTTCGGCAAAACATCGACAATGCTTTTCCAGTTTCCCTCTCCTATATATATCTATATCTCGCCCATTTTTCTGAGTTATATTACTCTTACCAATGGAGAATGAAGATGCCGAGACTCAAGTTGACAAGGATCAGGAAGAAAGGTAACTACCAAACCTCTAACTATGTTTTCTGAATTGAATTAAGACGTTTTTTCTGAATCGATATTCTGTATTTTCTGTCAGTGAGATTCAACAGGAAGTCGCGTATCTATGTTTTTCTTTTTATTCTTTTTTCTATACAAATTCTGCGATTACTTGTGAATGTTCTGTTATTTTGTTGTTATTCTACAGCCAACTGGATTCAGATGAAGTTGCGAAGAATCAACAAGAAGCTTATCATGGAGAAATGTGAGTATATCCTGTAACTTCTATGTTTTTGTTTTATCTATTTTGCTCTCAGAATCTTATCTATTTTTCCTTCTTTTGAATTGTTCTTCTCATCATTCCTAGTGAAAAAACATTTGAAGATAGTGGCGAAAACGTACCGGAGAAAGCAAAAAAGTACAAAATAGGATCATCAAAAGGAAAATTAATTGAACACGTGTTGTTACGTGAATCCATTAGGTAAATGGACCAAAAGCATTTTACATTTATATGTTTTTGTTAATAATTTAAAATAGAATAAACTTAATGTTTATAGATGAAAATAAGACTTAAACCAACTTTTTATTGCTATAAATTTCATTAGTCTTAAACTCAATTTGATTACAGGAGGCATGAATACGAAAGAGTGGTAGAACACTTTAATAGGTTGACTGACTCACTAAGGTTGCTTAGAATGCGGAGGAAGCTGTCTACCTTTGGCAATGTAGCGTGCCAAGTGTCATCTATGACAAAAAGGTATATCATATGTGTTTTTGAGTTCTGTTGAACTTTGTGCTGTTTTGCTGAACCTAACCAATCAAAGACAAACAATCTATTAATGTATGCCTTGGCCAATAGTTTCTTTGTCTAGGTGAAACTAAATGGTAGGTTGACAGATAATAAATTGAACACGTGTGAAAAAAGTATAGTACTTTTACAAATATAATCAGTCGTAATCAGAACAATTGAGGAAATCAACCAAACCGAATCAATTTGGTTTGGGAGGATTCGGTTGGTTTTTGATCGTTCTGTTTGTTTCTTTTCCTGGTTTAGGTTGGTTCAATTAGTTTGAGGTCAATTTGTTTTTCAAGAAAATGGTTTCGATTTTTTTTTTTTTTTTTTGCCACAAAACTAATTCAATTAGACTGCTATTTTCTCCACCAAATACCTTAAATTAGACTGTTAGTTTCCCTACCAATTTAAATTGGTTCGTTTACACCTGTAATTTTACCTGTTAAGTATCTTAAATTCTGTGAGCATTGCAGAAATCCCAAGACTATTACTTGCTCTGGTTCTTTTGCTCATGTTTTAGAACTCCTGTGATTATTATAAAAGTTTGATCACTAAAATTTGTATGGTTGGTTTTTCTTTCAGACCGTTTTTTTCCAGCGACTTAGCACAGATCAAATATATCATTCCAGAAGCTATTAATATTGATTATGTGTCTGATGAGAAAACAGCATGCTTCAAGTCAGAAATGATAATCAATCTTAACTTTGATATTGTCCAAGGTCACTCTGAGGTTTCTGATTTTGTGGCATTACGTAAAGTTTTCGCCTCAAGGGTAACCGAATATTTTGCCACGCATCCAGAGGTACTATTCTACACGACTATTGGAAAGTGATTGCATATGCTATAATTTAAATAAAAGCACAATGCAATTATAACAATTTTACTCTTCTCAATCATGGATCAACGCTAAGACATAAAAGTATTGAACTATTAAACTTGTTCTATGCTTTTGAGTTGAAAATTTAATAGCTTAAACCATTGTCTCCTAGAGAAAGAAATTGAAGGATTTTCAGTGATACACAATCATCCTTTGAAGGCTTTATGGATTTAGTTACCTTTCATGTACTTTATTGGTGTAAATGTTCCTAAAGGATTAAATTTTTGCTTATTTAACTCTTAATTGAAGGTCATTCTTGTAATTTGCTAATAGTGGTTCGGGGTTTTATCCCTTAGATCATTTCATTTATCAATGAAATCATTGGATTTCTATCTAAATGAAGAAAAAAAATAACCGTCGTGTCTTAGAGTTGGCTTTGGGCTGAGCAAAAGCATGCGAGGAACTGGCTCCATACCTGATTTACAAAAAAAAAAAAAATAATAAATAAAAACAGTATCATAAATTGCTATAAATATAGGAGTAAGGGCTCTACTGATTTTTGTTACTGTATTCAAGCCTTACTTTGTTACATTTGTGACTATTGGACCCTTTGTGCATTTAATTGTTTTTCTTATTTGGCAACCAGAGAATTCGAGTTCCAGAGGGGCCACTACCGCCGCCCTTCAACCCAGGGCCGTCAATTCATCGATTTCCTGCTGTTTGTTCAGAAGATTGTGGTTATGATCTATCTGAAGAAATCAGTTACGTTTTCGATGAACGTTCTGGACGTACACGTGTCGTTAGGACATTTGTTCCTTGTAAAAAAGCAGAGATATCAGAAGCTGATGGATCTTCTGTTGTTGGTTCATCTTCTGTTGATCTGCCATCCGCTCCAGCTGGTGAGAAAGAGGACAATAATGATAATTTGCTTGAAGATTTTCCGGCACAATCAACCTCACCTCAAGCTGCTGCTAATTCTTCTGAGAGTCCCTGCTGAAACATGGGGAACCTCAAGCTGCTGCTAATTCTTCTGAGAGTCCTGGTGAAACATGGGGAATGTGGGCTTTGTAAAGAGATTGATTCCAAATGAATTGTAAATGATCTGCTGCTTTTTTTTTCTTCTTTTTTTTTTTTTTTGAAAATATACTAGACAATTACGCCGCGCGCAATACAAATAAATGCACTAGGCAATTACAAGTTGCTGGTGGTCCGGTGCTTTTAAGACCTCTTGATTCTGATTCTAAATCTTCAACTTATTTGAGTCGTGAGGATGTTTTCACTAGGTGGTAACAGCAACTCCAGATGTAAAGTTCCCCAAGCTGCAGCGAAGTTTAAAT

mRNA sequence

ATGGAGAATGAAGATGCCGAGACTCAAGTTGACAAGGATCAGGAAGAAAGCCAACTGGATTCAGATGAAGTTGCGAAGAATCAACAAGAAGCTTATCATGGAGAAATGAGGCATGAATACGAAAGAGTGGTAGAACACTTTAATAGGTTGACTGACTCACTAAGGTTGCTTAGAATGCGGAGGAAGCTGTCTACCTTTGGCAATGTAGCGTGCCAAGTGTCATCTATGACAAAAAGACCGTTTTTTTCCAGCGACTTAGCACAGATCAAATATATCATTCCAGAAGCTATTAATATTGATTATGTGTCTGATGAGAAAACAGCATGCTTCAAGTCAGAAATGATAATCAATCTTAACTTTGATATTGTCCAAGGTCACTCTGAGGTTTCTGATTTTGTGGCATTACGTAAAGTTTTCGCCTCAAGGGTAACCGAATATTTTGCCACGCATCCAGAGAGAATTCGAGTTCCAGAGGGGCCACTACCGCCGCCCTTCAACCCAGGGCCGTCAATTCATCGATTTCCTGCTGTTTGTTCAGAAGATTGTGGTTATGATCTATCTGAAGAAATCAGTTACGTTTTCGATGAACGTTCTGGACGTACACGTGTCGTTAGGACATTTGTTCCTTGTAAAAAAGCAGAGATATCAGAAGCTGATGGATCTTCTGTTGTTGGTTCATCTTCTGTTGATCTGCCATCCGCTCCAGCTGGTGAGAAAGAGGACAATAATGATAATTTGCTTGAAGATTTTCCGGCACAATCAACCTCACCTCAAGCTGCTGCTAATTCTTCTGAGAGTCCCTGCTGA

Coding sequence (CDS)

ATGGAGAATGAAGATGCCGAGACTCAAGTTGACAAGGATCAGGAAGAAAGCCAACTGGATTCAGATGAAGTTGCGAAGAATCAACAAGAAGCTTATCATGGAGAAATGAGGCATGAATACGAAAGAGTGGTAGAACACTTTAATAGGTTGACTGACTCACTAAGGTTGCTTAGAATGCGGAGGAAGCTGTCTACCTTTGGCAATGTAGCGTGCCAAGTGTCATCTATGACAAAAAGACCGTTTTTTTCCAGCGACTTAGCACAGATCAAATATATCATTCCAGAAGCTATTAATATTGATTATGTGTCTGATGAGAAAACAGCATGCTTCAAGTCAGAAATGATAATCAATCTTAACTTTGATATTGTCCAAGGTCACTCTGAGGTTTCTGATTTTGTGGCATTACGTAAAGTTTTCGCCTCAAGGGTAACCGAATATTTTGCCACGCATCCAGAGAGAATTCGAGTTCCAGAGGGGCCACTACCGCCGCCCTTCAACCCAGGGCCGTCAATTCATCGATTTCCTGCTGTTTGTTCAGAAGATTGTGGTTATGATCTATCTGAAGAAATCAGTTACGTTTTCGATGAACGTTCTGGACGTACACGTGTCGTTAGGACATTTGTTCCTTGTAAAAAAGCAGAGATATCAGAAGCTGATGGATCTTCTGTTGTTGGTTCATCTTCTGTTGATCTGCCATCCGCTCCAGCTGGTGAGAAAGAGGACAATAATGATAATTTGCTTGAAGATTTTCCGGCACAATCAACCTCACCTCAAGCTGCTGCTAATTCTTCTGAGAGTCCCTGCTGA

Protein sequence

MENEDAETQVDKDQEESQLDSDEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPFFSSDLAQIKYIIPEAINIDYVSDEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVFASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEISYVFDERSGRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPAGEKEDNNDNLLEDFPAQSTSPQAAANSSESPC

Homology

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BLAST of Spg036910 vs. NCBI nr
Match: XP_038893531.1 (CDT1-like protein a, chloroplastic [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 6.8e-46
Identity = 126/252 (50.00%), Postives = 157/252 (62.30%), Query Frame = 0


Query: 21  SDEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRP 80
           +DE  K + +    +++ + + +VE F  LT S+RLLRMR+KLSTF NV+CQVS MTKR 
Sbjct: 44  ADEHLKGKLKEEGIKLQEKCQTIVEFFTCLTSSVRLLRMRKKLSTFHNVSCQVSVMTKRK 103

Query: 81  FFSSDLAQIKYIIPEAINID--YVSDEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKV 140
           F    LAQI YIIPEA+NID   + D+KT C K EMII+L  DIV+GH E SDF+AL KV
Sbjct: 104 FLDRHLAQIVYIIPEAVNIDKVMIHDKKTLCMKPEMIISLQLDIVKGHFEHSDFLALHKV 163

Query: 141 FASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEISYVFDERS 200
           FASRVT+YF  HPE+  VPEG LP PFN         +  S++    +S E     +E  
Sbjct: 164 FASRVTKYFVMHPEKSEVPEGTLPEPFNRRKMSSLDQS--SDNSSQPISIETDLSLEELR 223

Query: 201 GRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPAG--EKEDNNDNLLEDFPAQSTS 260
             +   R F    K  +S  + S  V SS V LPS PA   ++ED ND LLE+ P QS S
Sbjct: 224 PHSSFKRHF---SKKAVSSTETSESVASSIVGLPSTPACSLKEEDINDKLLEEIPTQSIS 283

Query: 261 PQ-AAANSSESP 268
           PQ  AANSSESP
Sbjct: 284 PQVGAANSSESP 290

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BLAST of Spg036910 vs. NCBI nr
Match: XP_022994693.1 (CDT1-like protein a, chloroplastic [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 6.8e-46
Identity = 127/255 (49.80%), Postives = 156/255 (61.18%), Query Frame = 0


Query: 22  DEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPF 81
           DE  K + +    + + +Y+ +VE F  L  SLRLL MR+KLSTF NV+ QVS M+KR F
Sbjct: 43  DEYLKGKLKEGGIKHQEKYQSIVELFTCLISSLRLLGMRKKLSTFHNVSGQVSVMSKRKF 102

Query: 82  FSSDLAQIKYIIPEAINIDYVS--DEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVF 141
               LAQI YIIPE + ID V+  D+KT+C KSEMII+L FD V+GHSE SDF+AL KVF
Sbjct: 103 LHRHLAQIVYIIPEVVTIDKVTIHDKKTSCMKSEMIISLRFDTVKGHSEYSDFLALHKVF 162

Query: 142 ASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEISYVFDERSG 201
           ASRV ++F  HPE+  VPE  LP PFN                   +S +    F++   
Sbjct: 163 ASRVAKFFVMHPEKSEVPEAALPEPFNRRNITFSLEQSTYNSSSVPISVQTELSFEDLCP 222

Query: 202 RTRVVRTF----VPCKKAEISEADGSSVVGSSSVDLPSAPA---GEKEDNNDNLLEDFPA 261
           ++   R F    VP  K E+SE   SSV G     LPSAPA    E+EDNNDNLLED P 
Sbjct: 223 QSTCKRHFSKKAVP--KTELSEPITSSVAG-----LPSAPACSLKEEEDNNDNLLEDLPV 282

Query: 262 QSTSPQAAANSSESP 268
           QS SP+A ANSSESP
Sbjct: 283 QSISPRATANSSESP 290

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BLAST of Spg036910 vs. NCBI nr
Match: KAG7012181.1 (CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-45
Identity = 130/259 (50.19%), Postives = 160/259 (61.78%), Query Frame = 0


Query: 22  DEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPF 81
           DE +K + +    + + +Y+ +VE F  L  SLRLL MR+KLSTF NV+ QVS M+KR F
Sbjct: 43  DEYSKEKSKEGGIKHQEKYQSIVEFFTCLISSLRLLGMRKKLSTFHNVSGQVSVMSKRKF 102

Query: 82  FSSDLAQIKYIIPEAINIDYVS--DEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVF 141
               LAQI YIIPE + ID V+  D+KT+C KSEMII+L  D V+GHSE SDF+AL KVF
Sbjct: 103 LHRHLAQIVYIIPEVVTIDKVTIHDKKTSCMKSEMIISLRLDTVEGHSEHSDFLALHKVF 162

Query: 142 ASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEISY------- 201
           ASRV ++F  HPE+  VPE  LP PFN       F    S D   + SE IS        
Sbjct: 163 ASRVAKFFVMHPEKSEVPEAALPEPFNRRNI--TFSLDQSTDDSSEKSEPISVQTELSFE 222

Query: 202 -VFDERSGRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPA---GEKEDNNDNLLE 261
            ++ E + +    +  VP  K E+SE   SSVVG     LPSAPA    E+ED NDNLLE
Sbjct: 223 DLYPESTFKRHFSKKAVP--KTELSEPITSSVVG-----LPSAPACSLKEEEDKNDNLLE 282

Query: 262 DFPAQSTSPQAAANSSESP 268
           D P QS SP+A ANSSESP
Sbjct: 283 DLPVQSISPRATANSSESP 292

[Close]

BLAST of Spg036910 vs. NCBI nr
Match: KAG6572997.1 (CDT1-like protein a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-45
Identity = 130/259 (50.19%), Postives = 160/259 (61.78%), Query Frame = 0


Query: 22  DEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPF 81
           DE +K + +    + + +Y+ +VE F  L  SLRLL MR+KLSTF NV+ QVS M+KR F
Sbjct: 43  DEYSKEKSKEGGIKHQEKYQSIVEFFTCLISSLRLLGMRKKLSTFHNVSGQVSVMSKRKF 102

Query: 82  FSSDLAQIKYIIPEAINIDYVS--DEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVF 141
               LAQI YIIPE + ID V+  D+KT+C KSEMII+L  D V+GHSE SDF+AL KVF
Sbjct: 103 LHRHLAQIVYIIPEVVTIDKVTIHDKKTSCMKSEMIISLRLDTVEGHSEHSDFLALHKVF 162

Query: 142 ASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEISY------- 201
           ASRV ++F  HPE+  VPE  LP PFN       F    S D   + SE IS        
Sbjct: 163 ASRVAKFFVMHPEKSEVPEAALPEPFNRRNI--TFSLDQSTDDSSEKSEPISVQTELSFE 222

Query: 202 -VFDERSGRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPA---GEKEDNNDNLLE 261
            ++ E + +    +  VP  K E+SE   SSVVG     LPSAPA    E+ED NDNLLE
Sbjct: 223 DLYPESTFKRHFSKKAVP--KTELSEPITSSVVG-----LPSAPACSLKEEEDKNDNLLE 282

Query: 262 DFPAQSTSPQAAANSSESP 268
           D P QS SP+A ANSSESP
Sbjct: 283 DLPVQSISPRATANSSESP 292

[Close]

BLAST of Spg036910 vs. NCBI nr
Match: XP_022954488.1 (CDT1-like protein a, chloroplastic [Cucurbita moschata])

HSP 1 Score: 189.9 bits (481), Expect = 2.9e-44
Identity = 131/259 (50.58%), Postives = 160/259 (61.78%), Query Frame = 0


Query: 22  DEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPF 81
           DE +K + +    + + +Y+ +VE F  L  SLRLL MR+KLSTF NV+ QVS M+KR F
Sbjct: 43  DEYSKGKLKEGGIKHQEKYQSIVEFFTCLISSLRLLGMRKKLSTFHNVSGQVSVMSKRKF 102

Query: 82  FSSDLAQIKYIIPEAINIDYVS--DEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVF 141
               LAQI Y IPE + ID V+  D+KT+C KSEMII+L  D V+GHSE SDF+AL KVF
Sbjct: 103 LHRHLAQIVYFIPEVVTIDKVTIHDKKTSCMKSEMIISLRLDTVKGHSEHSDFLALHKVF 162

Query: 142 ASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEIS----YVFD 201
           ASRV ++F  HPE+  VPE  LP PFN       F    S D   + SE IS      F+
Sbjct: 163 ASRVAKFFVMHPEKSEVPEAALPEPFNRRNI--TFSLDQSTDDSSEKSEPISVQTELSFE 222

Query: 202 ERSGRTRVVRTF----VPCKKAEISEADGSSVVGSSSVDLPSAPA---GEKEDNNDNLLE 261
           +   ++   R F    VP  K E+SE   SSVVG     LPSAPA    E+ED NDNLLE
Sbjct: 223 DPYPQSTFKRHFSKKAVP--KTELSEPITSSVVG-----LPSAPACSLKEEEDKNDNLLE 282

Query: 262 DFPAQSTSPQAAANSSESP 268
           D P QS SP+A ANSSESP
Sbjct: 283 DLPVQSISPRATANSSESP 292

[Close]

BLAST of Spg036910 vs. ExPASy Swiss-Prot
Match: Q9SJW9 (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-19
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 27  NQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPFFSSDL 86
           + + A   ++  +YE + + F  L +S+ L ++R    TF N++ Q+  +T+R F  S L
Sbjct: 102 SNKNAEKEKLPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHL 161

Query: 87  AQIKYIIPEAINID--YVSDEKTACFKSEMIINLNFDIVQGHSE---VSDFVALRKVFAS 146
           AQIK+I+PEAI I    + DE T C K ++ + LN D V+ + +    S  +ALRKVF +
Sbjct: 162 AQIKHILPEAIEIKRVLIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRA 221

Query: 147 RVTEYFATHPERIRVPEGPLPPPFN 167
           R+ ++   HP+   VPE PLP PFN
Sbjct: 222 RLADFVKAHPQGDEVPEEPLPEPFN 246

[Close]

BLAST of Spg036910 vs. ExPASy Swiss-Prot
Match: Q9M1S9 (CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-12
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 0


Query: 35  EMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPFFSSDLAQIKYIIP 94
           ++   +E + E FN L  ++RLL+++   +T+ N+  ++  +T R F    LAQ+K+I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 95  EAINIDYVSD--EKTACFKSEMIINLNFDIVQGHSEV--SDFVALRKVFASRVTEYFATH 154
           EAI +  V    E T C K  + I LN D +     +  + ++ LRKVF S++ ++   H
Sbjct: 105 EAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH 164

Query: 155 PERIRVPEGPLPPPFN 167
           P +  +P+  LP PFN
Sbjct: 165 P-KDEIPKELLPEPFN 179

[Close]

BLAST of Spg036910 vs. ExPASy TrEMBL
Match: A0A6J1K5V4 (CDT1-like protein a, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490341 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-46
Identity = 127/255 (49.80%), Postives = 156/255 (61.18%), Query Frame = 0


Query: 22  DEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPF 81
           DE  K + +    + + +Y+ +VE F  L  SLRLL MR+KLSTF NV+ QVS M+KR F
Sbjct: 43  DEYLKGKLKEGGIKHQEKYQSIVELFTCLISSLRLLGMRKKLSTFHNVSGQVSVMSKRKF 102

Query: 82  FSSDLAQIKYIIPEAINIDYVS--DEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVF 141
               LAQI YIIPE + ID V+  D+KT+C KSEMII+L FD V+GHSE SDF+AL KVF
Sbjct: 103 LHRHLAQIVYIIPEVVTIDKVTIHDKKTSCMKSEMIISLRFDTVKGHSEYSDFLALHKVF 162

Query: 142 ASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEISYVFDERSG 201
           ASRV ++F  HPE+  VPE  LP PFN                   +S +    F++   
Sbjct: 163 ASRVAKFFVMHPEKSEVPEAALPEPFNRRNITFSLEQSTYNSSSVPISVQTELSFEDLCP 222

Query: 202 RTRVVRTF----VPCKKAEISEADGSSVVGSSSVDLPSAPA---GEKEDNNDNLLEDFPA 261
           ++   R F    VP  K E+SE   SSV G     LPSAPA    E+EDNNDNLLED P 
Sbjct: 223 QSTCKRHFSKKAVP--KTELSEPITSSVAG-----LPSAPACSLKEEEDNNDNLLEDLPV 282

Query: 262 QSTSPQAAANSSESP 268
           QS SP+A ANSSESP
Sbjct: 283 QSISPRATANSSESP 290

[Close]

BLAST of Spg036910 vs. ExPASy TrEMBL
Match: A0A6J1GR86 (CDT1-like protein a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456741 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 131/259 (50.58%), Postives = 160/259 (61.78%), Query Frame = 0


Query: 22  DEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPF 81
           DE +K + +    + + +Y+ +VE F  L  SLRLL MR+KLSTF NV+ QVS M+KR F
Sbjct: 43  DEYSKGKLKEGGIKHQEKYQSIVEFFTCLISSLRLLGMRKKLSTFHNVSGQVSVMSKRKF 102

Query: 82  FSSDLAQIKYIIPEAINIDYVS--DEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKVF 141
               LAQI Y IPE + ID V+  D+KT+C KSEMII+L  D V+GHSE SDF+AL KVF
Sbjct: 103 LHRHLAQIVYFIPEVVTIDKVTIHDKKTSCMKSEMIISLRLDTVKGHSEHSDFLALHKVF 162

Query: 142 ASRVTEYFATHPERIRVPEGPLPPPFNPGPSIHRFPAVCSEDCGYDLSEEIS----YVFD 201
           ASRV ++F  HPE+  VPE  LP PFN       F    S D   + SE IS      F+
Sbjct: 163 ASRVAKFFVMHPEKSEVPEAALPEPFNRRNI--TFSLDQSTDDSSEKSEPISVQTELSFE 222

Query: 202 ERSGRTRVVRTF----VPCKKAEISEADGSSVVGSSSVDLPSAPA---GEKEDNNDNLLE 261
           +   ++   R F    VP  K E+SE   SSVVG     LPSAPA    E+ED NDNLLE
Sbjct: 223 DPYPQSTFKRHFSKKAVP--KTELSEPITSSVVG-----LPSAPACSLKEEEDKNDNLLE 282

Query: 262 DFPAQSTSPQAAANSSESP 268
           D P QS SP+A ANSSESP
Sbjct: 283 DLPVQSISPRATANSSESP 292

[Close]

BLAST of Spg036910 vs. ExPASy TrEMBL
Match: A0A6J1C8S9 (CDT1-like protein a, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009026 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.0e-44
Identity = 118/253 (46.64%), Postives = 160/253 (63.24%), Query Frame = 0


Query: 21  SDEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRP 80
           +DE  K + +    +++ + + +V  F+ +  SLRLL +R+KLSTF N++C VS+MTKR 
Sbjct: 56  ADEYLKGKLKEEEIKVQEKCQTIVRLFSCMISSLRLLGLRKKLSTFKNISCMVSAMTKRK 115

Query: 81  FFSSDLAQIKYIIPEAINID--YVSDEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKV 140
           FF   LAQI YIIPEA+NI+   + D +T C K EM+I+L  DIV+GHSE SDF+AL  +
Sbjct: 116 FFHRHLAQIVYIIPEAVNIEKMMIHDMRTLCMKPEMVISLQLDIVEGHSEHSDFLALGTL 175

Query: 141 FASRVTEYFATHPERIRVPEGPLPPPFNPGP---SIHRFPAVCSEDCGYDLSEEISYVFD 200
           F SRV +YF  HPE+  VPEGPLP PFN      S+++     SE     +S E +  F+
Sbjct: 176 FTSRVKKYFVLHPEKSEVPEGPLPEPFNQRNLMLSLYQSSDSSSEK-SQQISVETNSYFE 235

Query: 201 ERSGRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPAG--EKEDNNDNLLEDFPAQ 260
           E    +   R F    K  + +A+ S  V  S+VDLPS  A    ++D+ND+LLEDFPAQ
Sbjct: 236 ESYPPSSFKRYF---SKQAVPKAEISEPVAPSAVDLPSTAACGLTEQDSNDHLLEDFPAQ 295

Query: 261 STSPQAAANSSES 267
           S SPQAA  SSES
Sbjct: 296 SVSPQAADESSES 304

[Close]

BLAST of Spg036910 vs. ExPASy TrEMBL
Match: A0A5D3BIY5 (CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002810 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-41
Identity = 121/255 (47.45%), Postives = 157/255 (61.57%), Query Frame = 0


Query: 21  SDEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRP 80
           +DE  K + +    +++ + + +VE F  LT S+RLL+MR+K+STF NV+ QVS MTKR 
Sbjct: 47  ADEYLKGKLKEEEIKLQEKCQTIVEFFTCLTSSMRLLKMRKKMSTFHNVSRQVSVMTKRM 106

Query: 81  FFSSDLAQIKYIIPEAINID--YVSDEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKV 140
           F    LAQI YIIPEA+NID   + D+KT+C K EMII+L  D+V+GHSE SDF+AL KV
Sbjct: 107 FLDKHLAQIVYIIPEAVNIDKVMIHDKKTSCMKPEMIISLQLDVVKGHSEHSDFLALHKV 166

Query: 141 FASRVTEYFATHPERIRVPEGPLPPPFNPGP--SIHRFPAVCSEDCGYDLSEEISYVFDE 200
           FASRV +YFA H E+  VPEG LP PFN     S+ +  +  S +     S +     +E
Sbjct: 167 FASRVLKYFAVHTEKNEVPEGALPKPFNRRKIFSLDQL-SDNSPERSRPTSIDSDLTLEE 226

Query: 201 RSGRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPAG---EKEDNNDNLLEDFPAQ 260
               + + R F    K  IS  + S  V SS V  PS PA    ++ED ND LLED P  
Sbjct: 227 LCPHSSLKRHF---SKKSISSVEISEPVASSIVFSPSIPACSSLKEEDTNDKLLEDIP-- 286

Query: 261 STSPQ-AAANSSESP 268
           +  PQ AAANSSESP
Sbjct: 287 TLPPQVAAANSSESP 295

[Close]

BLAST of Spg036910 vs. ExPASy TrEMBL
Match: A0A1S3ATS0 (CDT1-like protein a, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482615 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-41
Identity = 121/255 (47.45%), Postives = 157/255 (61.57%), Query Frame = 0


Query: 21  SDEVAKNQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRP 80
           +DE  K + +    +++ + + +VE F  LT S+RLL+MR+K+STF NV+ QVS MTKR 
Sbjct: 47  ADEYLKGKLKEEEIKLQEKCQTIVEFFTCLTSSMRLLKMRKKMSTFHNVSRQVSVMTKRM 106

Query: 81  FFSSDLAQIKYIIPEAINID--YVSDEKTACFKSEMIINLNFDIVQGHSEVSDFVALRKV 140
           F    LAQI YIIPEA+NID   + D+KT+C K EMII+L  D+V+GHSE SDF+AL KV
Sbjct: 107 FLDKHLAQIVYIIPEAVNIDKVMIHDKKTSCMKPEMIISLQLDVVKGHSEHSDFLALHKV 166

Query: 141 FASRVTEYFATHPERIRVPEGPLPPPFNPGP--SIHRFPAVCSEDCGYDLSEEISYVFDE 200
           FASRV +YFA H E+  VPEG LP PFN     S+ +  +  S +     S +     +E
Sbjct: 167 FASRVLKYFAVHTEKNEVPEGALPKPFNRRKIFSLDQL-SDNSPERSRPTSIDSDLTLEE 226

Query: 201 RSGRTRVVRTFVPCKKAEISEADGSSVVGSSSVDLPSAPAG---EKEDNNDNLLEDFPAQ 260
               + + R F    K  IS  + S  V SS V  PS PA    ++ED ND LLED P  
Sbjct: 227 LCPHSSLKRHF---SKKSISSVEISEPVASSIVFSPSIPACSSLKEEDTNDKLLEDIP-- 286

Query: 261 STSPQ-AAANSSESP 268
           +  PQ AAANSSESP
Sbjct: 287 TLPPQVAAANSSESP 295

[Close]

BLAST of Spg036910 vs. TAIR 10
Match: AT2G31270.1 (homolog of yeast CDT1 A )

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-20
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 27  NQQEAYHGEMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPFFSSDL 86
           + + A   ++  +YE + + F  L +S+ L ++R    TF N++ Q+  +T+R F  S L
Sbjct: 102 SNKNAEKEKLPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHL 161

Query: 87  AQIKYIIPEAINID--YVSDEKTACFKSEMIINLNFDIVQGHSE---VSDFVALRKVFAS 146
           AQIK+I+PEAI I    + DE T C K ++ + LN D V+ + +    S  +ALRKVF +
Sbjct: 162 AQIKHILPEAIEIKRVLIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRA 221

Query: 147 RVTEYFATHPERIRVPEGPLPPPFN 167
           R+ ++   HP+   VPE PLP PFN
Sbjct: 222 RLADFVKAHPQGDEVPEEPLPEPFN 246

[Close]

BLAST of Spg036910 vs. TAIR 10
Match: AT3G54710.1 (homolog of yeast CDT1 B homolog of yeast CDT1 B )

HSP 1 Score: 75.5 bits (184), Expect = 7.3e-14
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 0


Query: 35  EMRHEYERVVEHFNRLTDSLRLLRMRRKLSTFGNVACQVSSMTKRPFFSSDLAQIKYIIP 94
           ++   +E + E FN L  ++RLL+++   +T+ N+  ++  +T R F    LAQ+K+I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 95  EAINIDYVSD--EKTACFKSEMIINLNFDIVQGHSEV--SDFVALRKVFASRVTEYFATH 154
           EAI +  V    E T C K  + I LN D +     +  + ++ LRKVF S++ ++   H
Sbjct: 105 EAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH 164

Query: 155 PERIRVPEGPLPPPFN 167
           P +  +P+  LP PFN
Sbjct: 165 P-KDEIPKELLPEPFN 179

The following BLAST results are available for this feature:

BLAST of Spg036910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893531.1	6.8e-46	50.00	CDT1-like protein a, chloroplastic [Benincasa hispida]	[more]
XP_022994693.1	6.8e-46	49.80	CDT1-like protein a, chloroplastic [Cucurbita maxima]	[more]
KAG7012181.1	1.5e-45	50.19	CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572997.1	1.5e-45	50.19	CDT1-like protein a, chloroplastic, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022954488.1	2.9e-44	50.58	CDT1-like protein a, chloroplastic [Cucurbita moschata]	[more]

BLAST of Spg036910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJW9	5.7e-19	37.93	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1...	[more]
Q9M1S9	1.0e-12	33.09	CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1	[more]

BLAST of Spg036910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K5V4	3.3e-46	49.80	CDT1-like protein a, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490341 P...	[more]
A0A6J1GR86	1.4e-44	50.58	CDT1-like protein a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456741...	[more]
A0A6J1C8S9	4.0e-44	46.64	CDT1-like protein a, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11100902...	[more]
A0A5D3BIY5	9.3e-41	47.45	CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G...	[more]
A0A1S3ATS0	9.3e-41	47.45	CDT1-like protein a, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Spg036910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31270.1	4.0e-20	37.93	homolog of yeast CDT1 A	[more]
AT3G54710.1	7.3e-14	33.09	homolog of yeast CDT1 B homolog of yeast CDT1 B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014939	CDT1 Geminin-binding domain-like	SMART	SM01075	CDT1_2	coord: 36..163 e-value: 9.5E-5 score: 24.4
IPR014939	CDT1 Geminin-binding domain-like	PFAM	PF08839	CDT1	coord: 39..106 e-value: 3.2E-10 score: 40.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR28637	DNA REPLICATION FACTOR CDT1	coord: 10..177
None	No IPR available	PANTHER	PTHR28637:SF13	EXPRESSED PROTEIN	coord: 10..177
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 35..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036910.1	Spg036910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle