Spg036824 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036824
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3/gypsy retrotransposon protein
Location	scaffold5: 47663759 .. 47672280 (+)
RNA-Seq Expression	Spg036824
Synteny	Spg036824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAGCAACAGAGAAAGAAGGAGAAGTCGAGCCACCAAAGGTAGGAGGAGACCGTAGCAAGTTCAAGAGGTTAGAAATGCCGGTATTCTCAGGGGATAACCCCGATTCGTGGCTATTCCGTACGGAGAGGTATTTCGAAATCCATCAACTTACAGAGTGGGAAAAAATCACAGTTGCTATCATTAGCTTCGATGAGTACGTGGTAGACTGGTATAGATGGTCTCACAATCGGAAACAGATTAATTCTTCGGCCGACTTGAAAGGTCGGTTGTTCAAACATTTCAGACCTTCCCAAGAAGGGAGCTTGTGCGCACGTTTCTTGACCATTAAACAACAATACTCAATGGCAGAGTATATCAAGAGGTTCAAGGTTTATGTGGCACCCCTGCCGGAGCTGCCAGAGACAGTATTAGAAAACACATTCCTCAACGGCCCGAAACCCGTCGTGAAGGCTACTGTGGTCAGTCGACGTCCTATTGGACTGGAAGAGATCATGACTGAGGCCCAACTCATGAAGACAGAGACTTGGCCATCCAACTGGCTATTGAAGGAATGGGCCCCCATCCAACTGGCTATTGAAGGAATGGGCCCAAGCACGGCAAGTGAGTTTTTTAAATTGGGCCTTACCCAATCGGGAAAAAGTGAGCAAGGTACGCAAACCAATGCTAAGCTGCCAGACGTCGTACCCCTACGAGCGATAACCTTATCGGATAAGGGAGCAACGGCCAGAAGGGATGTGACAACACGACGAATATCTGACGCCGAGTTCCAAAATAAACGCGAAAAAGGACTCTATTTCTGTTGTGACGAAAAATACATGCCAAACCACCGCTGCAAAAAGAAAGAAGTTCGATGGTTAACGGGACTGAGGAAATAGAACTCCTTCAAGGCGTGCCCACCGAGGAAGAAGAAGAAACCGCAGTGACTGAGATCGGAGATCTGGTGGAACTCGATTTAAAGTCAGTCATCGGGTTTTCCACGCCTGGAACAATGAAGGTGAAAGGATTTCTCAAAGGGAAAGTCGTGGTAGTATTGGTGGATTGTGGAGCCACCCACAATTTCATCCCTCAAAAGTTAGTAGACAAATTCAAATTTCCCGTGGTCGAAACAACGCATTCTGGCATAGTTATGGGAAATGGCGTGGCCACGATGGGAAGAGGGGTGTGCAAGTCCCTCTCCATAACGTTTCCAGAAATCACCATCGTAGAGGACTTCCTACCATTAGAGCTCGGGGTCGTAGACGTCATCCTTGGGATGCAATGGCTAAGAACGATGGGTACCATGAAGGTTGATTGGGTAGCCCTCACCATGACTTTCGAAGCAGGGGATCGTAAGGTGACCATCAAGGGAGATTCGTCATTGACAAGGGCTGAGGTCTCTCTGAAAATGATGGCAAAATCTTGGCACGAGTCAGATGAAGGCTTCCTTGCAAAACTTCGGGACTTGTCCTTGAATCACCGAAGACGGGGAACAGAGGAAGGAGAACAACTGGTTCAATCTCCCATGCCTCTCGAGGAAAGTAAATTACTCGAAGACTATAATGATGTGTTTAACCTTCCTGCAGGACTGCCACCACGTCGAGAGGTGGACCATCAGATTGTCCTCAAAGAAGGCCAGCGACCCATCAATGTAAGACCGTATAGATATGCGCATGTGCAGAAGACAGAAATTGAAAAATTGATCAAGGAGATGATGTTATCTGGAATTATTCGACCAAGCTCTAGCCCTTTCTCAAGTCCATGTTAGTCACGAAGAAGGATGGAGGGTGGAGGTTCTGTGTAGACTATAGGGCCCTGAACCAAGTGACAATTCCTGACAAATTTCCCATTCCGGTGATTGAGGATTGTTTGACGAACTACACGGATCAAGGGTGTACTCGAAGCTGGATTTGAAGTCGACTACCATCAGATTCGGATGGAGGAAGATGTGTCGAAAACCACTTTTAGAACGCATGACTCATGAGGGACACTATGAGTTCCTAATAATGCAATTTGGCGGACCAATGGGCCAGCCACCTTCAAATCCCTCATGAATCAAGCGTTCAGACCATTTTTACGTCGCTACTTGTTAGTGTTCTTTGATGACATCCTCATATACAGTCCTGATATGCGAACTCATCTGACTCATCTCGGTATGGTCTTCAATGTTTTAAGAGACAATGCCTTATTTGCCAACCAAATGAAATGTGTTTTTGCCCAAGAGAGGATAGCCTATCTAGGCCATTGGATTTTCGCAGATGGAGTAGAAGCAGATGGAGAAAAGATTCAAGCCATGGTGAGTTGGCCACAACCTAAAAACATCAAGGAATTAAAGGGATTCATGGGGCTAACCGGGTATTATAGACGATTGTGATGAACTACGGTAAAATAGCCACCCCCTGACACAATTGTTGAAGAAAGACGCTTTCCAATGGAATGAGGCTGCAACTGAGGCATTCAATCAATTGAATAACGCTATGGTTACGTTGCCTGTTTTGGCTCTACCAGATTTTGACCAACCATTCACCATTGAGACCGATGCTTCAGGCACAGGGTTAGGTGTCGTGCTCACTCAGAAACAGAGACCAGCGGCCTTCTTCAGCCAAACTCTGTCAAGTTGTGCACGGGAAAAATCTGTTTTCGAAAGAGAATTGATGGCCATCGTTTTAGCAGTGCAGAAATGGAGGCATTGTCTTCTAGGACAAAAATTTGTGGTGCTCACGAATCAACAAGCTTTGAAGCATCTCTTAGAGGAGCGGAAGGTGCAACCTGAATATCAGAAATGGTTGACGAAATTTCTGGGGTATGACTTTGAAACCAAGTATAATTCGGGACTCCTCAACAAAGCGACGGACGCACTCTCTTGAATTCCCCATGAGGTCGAATTGTCCCTGATTTTTGTTCCATCCATTATAGATATCGACGTGATATAAGAAGAAGTTAGTCAAGACCCTGAGTTAGTGAAGATAAAGGAAGAGTTAGAGTTGGATCCGAATTCCCATTCCAAGTATAATATCATACAAGGGAAGTTGTTGTACAAAGATTGCATGGTCCTCTCAAGTAAGTCCTCGTTGATTCCTACTATCTTACACAGTTATCACCATTCTATCATCAGGGGGCATTTAGGGTTCCAGAGTACTTATAAGAGATTGACCGGAGAGCTATTTCGGAAGAACATGAAAGCTGACATCAAAAGGTATGTGGAGAAACGTGTTGTGTGTCAACGCAATAAAAATAGTTCCATGTCTCCTGTGGGCCTTTTACAACCTCTACCCATACCGAACCGGATTTGGGAAGATATTTCCATGGATTTTGTGGAAGGATTACCTAAGTCAAAGGGATTTGATTCCATATTAAGGGTGGTGGATTGTCTCAGCAAGTACAGCCATTTCCTTCCATTGAAACACCCATTTACAACCAAGGATGTGGCAGCTATCTTTATCAATGAAGTAGTCCGGTTACATGGTTTTCCCAATCAATTGTGTCCAATCGAGATAAAATCTTTGTGAGCCATTTTTGGAATGAACTATTCAAGCTACAAGGCACTCAGTTGAAGCATAGCACAGCATTCCATCCTCAGACAGAAATCGTGAATAAATGTGTGGAAAATTATCTACGATGCTTCTGCAGTGAACATCCTAAACAGTGGGAGCAATGGTTATCTAGGCTGAGTAATGGGTATAATACCACCTTCCACATCTCCATCAACACGACCCCTGTTAATGTTGTGTACGGTTGCCAGCCTCCCCCTCTTATGTCGTATGGACATCGCAGGACCCCCAACAACACTGTCGATCAGCACTTAATGGACAAAGATCGAATCTTATTGGCCTTGAAGGATCAGTTAAACAGAGCACAAGAACGAATGAAACATTATGCATACAAATAGAGAAGGGAAGTCAACTACGCCGTAGGCGATCAAGTTTTTCTTAAGCTTAGACCCTACAGGCAGAGGTCACTAGCACGCAAGAGAAGTGAGAAACTATCACCCAAGTTTTTTGGCCCTTACACTACACTAGAAAAGATTGGAGAGGTAGCTTACAAGTTGGACCTTCCGCCAGAATCATCTATCCACAACACATGTTGGTTGTGAAGTGGACCTTCGGGTAGGAGAGTACCCAACCTCTTGTATGGCCCGCCCAGGCCCAAAGGTAGACAGGAGCTTTGGAATGAGCTCAAGGCCTTGTATGGGTTATGTGGGCATCACTGATGCATTTTGGGAGACTTTAATGTTGTTCGTTCCCCTTCAGAAAAGACTTCGGGAGGGAAGGTTTCGAAATCGATAAAGTCGTTTAATGAGTGGATTGAGGATTGCAGCTTTTTTGACCCCCCTTTTTCTAATGGGAGATTCACTTGGGCTAATAGTAGGGCGTGCAGTAGAATCGATAAAGCTCTTTGCTCTAAGGGTTGGATGGATACCTTCCATTGTGTCAGACAGTCCTTAGGCCCTCGAGTTACTTCTAATCACTGGCCCTTAATCCTTCTGTCGGGCCCTCAGAAATGGTGCCCTTGTCCTTTTCGCTTTGAGAATATGTGGTTGGATCATCCGTCCTTCAAATCTTCCTTCCCATCGTGGTGGAATATTGAGGCTCCTGAGAAGTGGGAAGGGTATAGGTTTATGGGTAAATTAAGAGCCCTAAGGAGAACTCTTAAATTGTGGAATAAAGAGGCCTTCGGTGATATTAAGGTGAAGAAACAAAAAGTGGTGAGCAGGATCAATGAGATTGATTCCCAGGAAGATAATGGGCCCTCGGATGATTCCCTCGAGGAGGAACGTATTTTCCTCAAATCTAAGCTCGCTAAGTTGGTTGAGAAAGAGACGATAAGTTAGAGGCAAAAGGCCAAAGTTAAATGGGCCAAGGATGGCGATGGTAACTCGGCCTTTTTTCATAGAATGGCTAACGGCAGAAGAAGTAAAAACATGATTGGCCCTTTGGAAAATAGACTGGGGATTCAAATTCATGAGGAGAAAGAGATCGAGGATGAAATTGTATCTTTCTTTTCCAATCTTTATGCCCCTCAGGTGACCCCCAAACCCTTTGTCAAAGGAATTGATCGGTGCCCGATCTCAGATAGGGAGAAAAACGACTTAGGCTCCCCTTTCTCGATGGAGGAAATCAAGAAAGCGGTCTTTGATTGTTAAACAGATAAATCCCCAGGTCCGGATGGCTTTTCCTTGGCCTTTTTTCAAGACAATTGGAAAGAGATTAAGGGGGATTTGGAACGCGTGTTTAAAGAATTTTATGAACTACCTTTGAATTTGGAACTAAGATATTTTAAATGCATAACTCCCCCTTGGTTCTCCTTTCAACAAGGCTAGGATTCATCTTGAGTTTGCAAGGCTTGTCTGTGTGTTGTATTTCGTATTTATAGGTATACTCAAGTTAGGAACGCTTGTCTCCAACCTCTCCCCCCCCCCCCCCACCCACCCCTCCCATTTGTCCTCTCCCCACAATCCCCACAATCCATGGAAACCACAATGACGGTGGCCTTAACGACGACGGCAAAAACCCGCGAGAGTCTCTCATACCTCTTTCTCGCTCTCTCCACGCATTCTCCTACCAACAGCAACAAAGCCCACGATAGCTTCCCTCAATCTCCTCAGACGACGTCTCTCTCAACCTAGTGATTTTCGATTTACAACCCACATCCACTATTTTTTTTTTTTAATTGACAGCAAATTGTATGCAAAGAGAAGAACCAAATGAAGTACCAGGTTATTCACATGCAATTTCTTATTTCGCAGTCCGTACATTAGCAATAAAAATCAACAATTAGATTTCATGGGTCATACACATGACCACGCTTTATTTCAAACAATCTAAGTACAACTAAAAATCAGACCACAAAATAAGAATTAAAAAACTGGGTCCTCATACTTGCAATCAATCAATTCCCAATAAAGGATCTAAACATAGCTTATATAAAATCCTCTACCAAAAAGAAAAATCATTCGAAACAAAAGGGGAAAAAGAGAAGAATCAAGAGGAAGAGCCCCCACGACGCAGGGGTGATTACAATCTAATCAACTAGGAGAATCCTTTAAAAACAGATGACCTCAACTTAAACAGGAAAAAACAAAGCCTAAAAATTCACATCCACAATCTTTCCAATGAGAAAAAGGAATCAAGGAAAAACAACAATTATAATAAACAGGAAACTTTGAACACGGCGCAAATAAAGCAAAACGAGAATTACCACCAAACTTTAGTCCACAGACTTCCAGCTAAACAATTCTATATCATATAAAACCCAAAAAGAAATTGAATAGAACATACCATAACTGACTAAGGTCTGATAGTCCGATCGTCCTCACCGAAAAAGAATCCCAGAAGAAACATTGAAAACCCCGAAACCCTAAACAATGACGATTACAGAAGATTATAATAATAATAAAAAAGAAAAACTACATACTGCAATTAATACCAATCCATCATATTAAATAAAGAAGTAAACTCCAACAAAACCAGATTCAAAAAACTAATAACATTGAAAATTACCAGTGAATTTTTTACACAACGGGTTGAGATTGAAAGAAAACAAAACATGCCAAAGGAGATTGTGGGCCAAGTATTTAGAATAAACAGGTTAGGATTAAGGAGGGGGCAGAGAACATTCTGGCCGCTTCAATAGATTTTCAGACAAGCAAGAAGATTGTGGTTTCAGGGAGGATTAAACACTTACGATTTCTAGGGTTTCGACGAGATGAGATTATGAGAACGATTTAACAGTCGTGCATTTAACAAAAATGGTAGGGAAGAAGAACAAACTTACCCAATAATGGAGTCGACAGCATTGAAGCGTTCATCGCTTTTGGAGAAATTCTTAGAAAAAACCGAGCATAATAGACGAAGTCGGCGAAGGAAGTCTTAAAAGCGAATTGAATGGTCAAAGTGGAAGAAGAAAGAATTTCACCGACCGTTGATCACCTCTCAGAGACGGAAATAAATAAATTATTTTTTTTAGTACAAATTCAAATTAGATTGAATTATTAATATTAATAGATGTCAAAAAGAAAAAAAAAATAGAATTAATTTAGTAGTGTTCTTCTGCCGCTATTGTTCAACTTTTTTTTTTTTGTGTGTGTGATCTGATTTTAACATGTGTTTTATCGTTCAACTTTTATATTAAAAATAAATAAATAAACTAATGAACCAATAATCTAAGTTAAATTAAAAGTTTAGTTTCTAAACTATTGGAAGTTTGGTTTCCGAACCTTAAAAAATATCCAATAGATTTTTCAACGATCAATTTTATGTTTAATAGATCCTTTAAACTTTAAAAATTTTAATAGGTGCCTAAATTTTATGTTAAAAATTAATCAATCTATTAGATATAATATTGAATATTATGCCTCTTGAGACTCTAAACTTTCAATTTTGCATCTACTAACTTGTGAATTTAAAAAAAATGTTGAATAGATTAAGGACTTACACAAAAATGAAAGTTTAAGGACTTGATATTTTTTAAAGCTCAGAGACCTATTGGACAAGAAATTCACAGTTTGAGGACCTATTTGACATAGAACCAAATTGAGACAACCTTAAATATTAGAGATTAGACTTGCAGTTGAACCAATAATCTGTCTGTCTAAGATCACTTTCTACTATATTCTGGTGTGTTTATAAAACGAGCTCTCCTAAAAATGTGTCAATTTTTCCAACAAAATTTTGAAAATTACAACAATCATTTTTTTTCGAGTTCAACAACATCCAGGGTGGGAGATTCAAACCTTTGGCATCTAGGTAAATGATACATGTCAATTAAAACTAACTTGTGTTCACTTTGTCGATTTATTGTTAATCATTGATTGATAGAAGGTGAGGGTGAGGAGTGATGGATGTTTATTGATCGTAAATCGTTCAACCTTTAGAAAAGTGGGTGTGGGAGGAAAGTAGTGGTAGAGTAGAGCAGAGTAACGAGAGTGGGGAAAGTGGAACTTGAGACAAGATGTTTATTGATCGTAAATCGTTCAACTTTTGGGAGTGGGTGTGGTGGTGGAGGAGCGCAAAGTAGCAAGAGTGGGGAGTCGAACTTGAGACAGGTATGGCAGTATGGGATCATGATTGTTTGGTGGTAGTAGCAAAAGCACAAAACTTAAGTATGTTGGAGAAAAAGATTGGAATCGACCGACATCATCTTTCAGGTTTTAGAGAATGTCAAAGGTAAATTCAGTCTTCTGTCCCTAGAAGCTTTCAAAGGAAAAAGAACTACAATCTTCATTCCAAACGGGTTTAAAGGAAAGGAATCGTCTCTGTTGGCAACGGAACTACTTGTTTGTTATTCCTCCGGAGATGGGTGGATAGGATACTACTTTATGAAAAAGTTGGAAGAAATTAAAGGTATTCTCACAGCTTGGAATATCAAGTCTTTTGGGAATATCAAACAAATTAAACTATCCATTCAAGAGCAGATTTCTGCTTTAGATAGTTTGGAAGTTGGAAAGACTCTACGTGACCAAGAGATCAAGGAAAGAAAATCCCTTAAATCTTCTCTCATGGAGATTAAAGGAAAAGAGATTGTGGTTCCAGAAAAGTAA

mRNA sequence

ATGAATGAAGCAACAGAGAAAGAAGGAGAAGTCGAGCCACCAAAGGTAGGAGGAGACCGTAGCAAGTTCAAGAGGTTAGAAATGCCGGTATTCTCAGGGGATAACCCCGATTCGTGGCTATTCCGTACGGAGAGGTATTTCGAAATCCATCAACTTACAGAGTGGGAAAAAATCACAGTTGCTATCATTAGCTTCGATGAGTACGTGGTAGACTGGTATAGATGGTCTCACAATCGGAAACAGATTAATTCTTCGGCCGACTTGAAAGGTCGGTTGTTCAAACATTTCAGACCTTCCCAAGAAGGGAGCTTGTGCGCACGTTTCTTGACCATTAAACAACAATACTCAATGGCAGAGTATATCAAGAGGTTCAAGGTTTATGTGGCACCCCTGCCGGAGCTGCCAGAGACAGTATTAGAAAACACATTCCTCAACGGCCCGAAACCCGTCGTGAAGGCTACTGTGGTCAGTCGACGTCCTATTGGACTGGAAGAGATCATGACTGAGGCCCAACTCATGAAGACAGAGACTTGGCCATCCAACTGGCTATTGAAGGAATGGGCCCCCATCCAACTGGCTATTGAAGGAATGGGCCCAAGCACGGCAAAAAAGACTTCGGGAGGGAAGGTTTCGAAATCGATAAAGTCGTTTAATGAGTGGATTGAGGATTGCAGCTTTTTTGACCCCCCTTTTTCTAATGGGAGATTCACTTGGGCTAATAGTAGGGCGTGCAGTAGAATCGATAAAGCTCTTTGCTCTAAGGGTTGGATGGATACCTTCCATTGTGTCAGACAGTCCTTAGGCCCTCGAGTTACTTCTAATCACTGGCCCTTAATCCTTCTGTCGGGCCCTCAGAAATGGTGCCCTTGTCCTTTTCGCTTTGAGAATATGTGGTTGGATCATCCGTCCTTCAAATCTTCCTTCCCATCGTGGTGGAATATTGAGGCTCCTGAGAAGTGGGAAGGGTATAGGTTTATGGGTAAATTAAGAGCCCTAAGGAGAACTCTTAAATTGTGGAATAAAGAGGCCTTCGGTGATATTAAGCAAGAGTGGGGAGTCGAACTTGAGACAGGTATGGCAGTATGGGATCATGATTGTTTGGTGGTAGTAGCAAAAGCACAAAACTTAAGTATGTTGGAGAAAAAGATTGGAATCGACCGACATCATCTTTCAGGAAAGGAATCGTCTCTGTTGGCAACGGAACTACTTGTTTGTTATTCCTCCGGAGATGGGTGGATAGGATACTACTTTATGAAAAAGTTGGAAGAAATTAAAGGTATTCTCACAGCTTGGAATATCAAGTCTTTTGGGAATATCAAACAAATTAAACTATCCATTCAAGAGCAGATTTCTGCTTTAGATAGTTTGGAAGTTGGAAAGACTCTACGTGACCAAGAGATCAAGGAAAGAAAATCCCTTAAATCTTCTCTCATGGAGATTAAAGGAAAAGAGATTGTGGTTCCAGAAAAGTAA

Coding sequence (CDS)

ATGAATGAAGCAACAGAGAAAGAAGGAGAAGTCGAGCCACCAAAGGTAGGAGGAGACCGTAGCAAGTTCAAGAGGTTAGAAATGCCGGTATTCTCAGGGGATAACCCCGATTCGTGGCTATTCCGTACGGAGAGGTATTTCGAAATCCATCAACTTACAGAGTGGGAAAAAATCACAGTTGCTATCATTAGCTTCGATGAGTACGTGGTAGACTGGTATAGATGGTCTCACAATCGGAAACAGATTAATTCTTCGGCCGACTTGAAAGGTCGGTTGTTCAAACATTTCAGACCTTCCCAAGAAGGGAGCTTGTGCGCACGTTTCTTGACCATTAAACAACAATACTCAATGGCAGAGTATATCAAGAGGTTCAAGGTTTATGTGGCACCCCTGCCGGAGCTGCCAGAGACAGTATTAGAAAACACATTCCTCAACGGCCCGAAACCCGTCGTGAAGGCTACTGTGGTCAGTCGACGTCCTATTGGACTGGAAGAGATCATGACTGAGGCCCAACTCATGAAGACAGAGACTTGGCCATCCAACTGGCTATTGAAGGAATGGGCCCCCATCCAACTGGCTATTGAAGGAATGGGCCCAAGCACGGCAAAAAAGACTTCGGGAGGGAAGGTTTCGAAATCGATAAAGTCGTTTAATGAGTGGATTGAGGATTGCAGCTTTTTTGACCCCCCTTTTTCTAATGGGAGATTCACTTGGGCTAATAGTAGGGCGTGCAGTAGAATCGATAAAGCTCTTTGCTCTAAGGGTTGGATGGATACCTTCCATTGTGTCAGACAGTCCTTAGGCCCTCGAGTTACTTCTAATCACTGGCCCTTAATCCTTCTGTCGGGCCCTCAGAAATGGTGCCCTTGTCCTTTTCGCTTTGAGAATATGTGGTTGGATCATCCGTCCTTCAAATCTTCCTTCCCATCGTGGTGGAATATTGAGGCTCCTGAGAAGTGGGAAGGGTATAGGTTTATGGGTAAATTAAGAGCCCTAAGGAGAACTCTTAAATTGTGGAATAAAGAGGCCTTCGGTGATATTAAGCAAGAGTGGGGAGTCGAACTTGAGACAGGTATGGCAGTATGGGATCATGATTGTTTGGTGGTAGTAGCAAAAGCACAAAACTTAAGTATGTTGGAGAAAAAGATTGGAATCGACCGACATCATCTTTCAGGAAAGGAATCGTCTCTGTTGGCAACGGAACTACTTGTTTGTTATTCCTCCGGAGATGGGTGGATAGGATACTACTTTATGAAAAAGTTGGAAGAAATTAAAGGTATTCTCACAGCTTGGAATATCAAGTCTTTTGGGAATATCAAACAAATTAAACTATCCATTCAAGAGCAGATTTCTGCTTTAGATAGTTTGGAAGTTGGAAAGACTCTACGTGACCAAGAGATCAAGGAAAGAAAATCCCTTAAATCTTCTCTCATGGAGATTAAAGGAAAAGAGATTGTGGTTCCAGAAAAGTAA

Protein sequence

MNEATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTAKKTSGGKVSKSIKSFNEWIEDCSFFDPPFSNGRFTWANSRACSRIDKALCSKGWMDTFHCVRQSLGPRVTSNHWPLILLSGPQKWCPCPFRFENMWLDHPSFKSSFPSWWNIEAPEKWEGYRFMGKLRALRRTLKLWNKEAFGDIKQEWGVELETGMAVWDHDCLVVVAKAQNLSMLEKKIGIDRHHLSGKESSLLATELLVCYSSGDGWIGYYFMKKLEEIKGILTAWNIKSFGNIKQIKLSIQEQISALDSLEVGKTLRDQEIKERKSLKSSLMEIKGKEIVVPEK

Homology

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BLAST of Spg036824 vs. NCBI nr
Match: XP_038893564.1 (uncharacterized protein LOC120082453 [Benincasa hispida])

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-42
Identity = 88/170 (51.76%), Postives = 126/170 (74.12%), Query Frame = 0


Query: 5   TEKEGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAI 64
           T  E E  P   GG  D+SK+KRLE+P+F+G+NP+SW++R E YFEI++L++ EK+ V +
Sbjct: 63  TADETESTPSNGGGGSDKSKYKRLEIPIFAGENPESWVYRAEHYFEIYELSDQEKVKVVV 122

Query: 65  ISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIK 124
           I+F    VDW+RWSHNR+ IN   +LK R+F+++RP+ EGSL AR L IKQ+ S A+Y+K
Sbjct: 123 INFGPEEVDWFRWSHNRRPINMWEELKIRMFEYYRPTGEGSLSARLLRIKQEGSYADYVK 182

Query: 125 RFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQL 173
           +F  Y APLP+L E VL++ F+NG +P ++  V+SR+ I LEE + EAQL
Sbjct: 183 KFVTYSAPLPDLAEEVLKDAFVNGLEPTLRVEVISRKMITLEECIYEAQL 232

[Close]

BLAST of Spg036824 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 5.4e-41
Identity = 102/242 (42.15%), Postives = 142/242 (58.68%), Query Frame = 0


Query: 18  GDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSH 77
           GDRSK+K+LEMP+F G+NP+SW++R E +FEI+ L E EK+ VA++SF +  VDWYRWSH
Sbjct: 78  GDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEVDWYRWSH 137

Query: 78  NRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPET 137
           NR+++ S  DLK R+F  F+ + + SL AR + I+Q  S  +Y+K+F  Y APLP + E+
Sbjct: 138 NRRKVESWEDLKERMFDFFKDTGQKSLVARLIRIEQDGSYNDYVKKFVNYSAPLPHMTES 197

Query: 138 VLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQL----A 197
           VL + FL G +P ++A VVSR P+ LEE M EAQL+        W   E           
Sbjct: 198 VLRDAFLTGLEPNLQAEVVSRNPLTLEECMREAQLVNDRNLALQWSKAEGGGRNYKKGEG 257

Query: 198 IEGMGPSTAKKTSGGKVSKSIKSFNEWIE-DCSFFDPPFSNGRFTWANSRACSRIDKALC 255
               GP   +K    K    +K     I+ +    +PP    R + A  RA  R+DK LC
Sbjct: 258 STNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEPPVK--RLSDAEFRA--RLDKGLC 315

[Close]

BLAST of Spg036824 vs. NCBI nr
Match: KAA0056659.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-40
Identity = 108/263 (41.06%), Postives = 158/263 (60.08%), Query Frame = 0


Query: 3   EATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAI 62
           E T+  GE+   ++  DRSK+K+LEMP+F G+NP+SW++R E +FEI+ L E EK+ VA+
Sbjct: 64  EETDVTGEIHTHQI--DRSKYKKLEMPMFQGENPESWVYRAEHFFEINNLPEAEKVKVAV 123

Query: 63  ISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIK 122
           +SF +  VDWYRWSHNR+++ S  DLK R+F+ FR + + SL AR + I+Q+ S ++Y+K
Sbjct: 124 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVK 183

Query: 123 RFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNW 182
           +F  Y APLP + E+VL + FL G +P ++A V+SR P  LEE M  AQL+       N 
Sbjct: 184 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEECMMAAQLVNDR----NL 243

Query: 183 LLKEWAPIQLAIEGMGPSTAKKTSGGKV----SKSIKSFNEW-IEDCSF--------FDP 242
            LK    +  A  G+      +T+G KV     K I   NE+ ++  +          +P
Sbjct: 244 ALK----LAQAEMGIMEPKRSETAGNKVPWNNDKGIMRKNEFQMKQITIPLKGSYQKGEP 303

Query: 243 PFSNGRFTWANSRACSRIDKALC 253
           P    R + A  RA  R+DK LC
Sbjct: 304 PVK--RLSDAEFRA--RLDKGLC 312

[Close]

BLAST of Spg036824 vs. NCBI nr
Match: TYK22652.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-40
Identity = 83/182 (45.60%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 8   EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISF 67
           E ++ P   GG  D+S +K+LEMPVF+G+NP+SW++R E YF+I++L + EK+ VA++SF
Sbjct: 66  ETDIAPSSAGGSSDKSMYKKLEMPVFNGENPESWIYRAEHYFDINELADEEKVKVAVVSF 125

Query: 68  DEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFK 127
               V+W+RWS+NRK+I+S  DLK R+F+HF+   EGSL AR + I+Q    A+Y+K+F 
Sbjct: 126 GPDAVNWFRWSNNRKKISSWEDLKKRMFEHFKAPGEGSLGARLIRIRQDGLYADYLKKFL 185

Query: 128 VYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLK 187
            Y APLPE+ E+VL + F+ G +  ++A V+SR P+ LE+ M EAQ++    +     L 
Sbjct: 186 EYSAPLPEMAESVLIDAFITGLEINLQAEVISRHPMTLEDCMREAQMVSDRDYAIKLALN 245

[Close]

BLAST of Spg036824 vs. NCBI nr
Match: KAA0067146.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97452.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 7.8e-40
Identity = 90/187 (48.13%), Postives = 128/187 (68.45%), Query Frame = 0


Query: 19  DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHN 78
           DRSK+K+LEMP+F G+NP+SW++RTE +FEI+ L + EK+ VA+++F +  VDWY WSHN
Sbjct: 79  DRSKYKKLEMPMFLGENPESWVYRTEHFFEINNLPKAEKVKVAVVNFGQDEVDWYCWSHN 138

Query: 79  RKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETV 138
           RK++ S  DLKGR+F+ FR S + SL AR + I+Q  S  +Y+K+F  Y APLP + E+V
Sbjct: 139 RKKVESWEDLKGRMFEFFRDSGQKSLGARLIRIQQDGSYNDYVKKFVTYSAPLPYMAESV 198

Query: 139 LENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMG 198
           L + F+ G +P ++A V+SR P  LEE M EAQL+  +     + + E    +   EG G
Sbjct: 199 LVDAFVTGLEPSLQAEVISRHPQTLEECMKEAQLVNDKNLALKFTIMELGMAEWD-EG-G 258

Query: 199 PSTAKKT 206
            ST KKT
Sbjct: 259 SSTGKKT 263

[Close]

BLAST of Spg036824 vs. ExPASy TrEMBL
Match: A0A5D3DGC7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00940 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-40
Identity = 83/182 (45.60%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 8   EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISF 67
           E ++ P   GG  D+S +K+LEMPVF+G+NP+SW++R E YF+I++L + EK+ VA++SF
Sbjct: 66  ETDIAPSSAGGSSDKSMYKKLEMPVFNGENPESWIYRAEHYFDINELADEEKVKVAVVSF 125

Query: 68  DEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFK 127
               V+W+RWS+NRK+I+S  DLK R+F+HF+   EGSL AR + I+Q    A+Y+K+F 
Sbjct: 126 GPDAVNWFRWSNNRKKISSWEDLKKRMFEHFKAPGEGSLGARLIRIRQDGLYADYLKKFL 185

Query: 128 VYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLK 187
            Y APLPE+ E+VL + F+ G +  ++A V+SR P+ LE+ M EAQ++    +     L 
Sbjct: 186 EYSAPLPEMAESVLIDAFITGLEINLQAEVISRHPMTLEDCMREAQMVSDRDYAIKLALN 245

[Close]

BLAST of Spg036824 vs. ExPASy TrEMBL
Match: A0A5A7UT21 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001910 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-40
Identity = 108/263 (41.06%), Postives = 158/263 (60.08%), Query Frame = 0


Query: 3   EATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAI 62
           E T+  GE+   ++  DRSK+K+LEMP+F G+NP+SW++R E +FEI+ L E EK+ VA+
Sbjct: 64  EETDVTGEIHTHQI--DRSKYKKLEMPMFQGENPESWVYRAEHFFEINNLPEAEKVKVAV 123

Query: 63  ISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIK 122
           +SF +  VDWYRWSHNR+++ S  DLK R+F+ FR + + SL AR + I+Q+ S ++Y+K
Sbjct: 124 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVK 183

Query: 123 RFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNW 182
           +F  Y APLP + E+VL + FL G +P ++A V+SR P  LEE M  AQL+       N 
Sbjct: 184 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEECMMAAQLVNDR----NL 243

Query: 183 LLKEWAPIQLAIEGMGPSTAKKTSGGKV----SKSIKSFNEW-IEDCSF--------FDP 242
            LK    +  A  G+      +T+G KV     K I   NE+ ++  +          +P
Sbjct: 244 ALK----LAQAEMGIMEPKRSETAGNKVPWNNDKGIMRKNEFQMKQITIPLKGSYQKGEP 303

Query: 243 PFSNGRFTWANSRACSRIDKALC 253
           P    R + A  RA  R+DK LC
Sbjct: 304 PVK--RLSDAEFRA--RLDKGLC 312

[Close]

BLAST of Spg036824 vs. ExPASy TrEMBL
Match: A0A5D3BC89 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00030 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.8e-40
Identity = 90/187 (48.13%), Postives = 128/187 (68.45%), Query Frame = 0


Query: 19  DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHN 78
           DRSK+K+LEMP+F G+NP+SW++RTE +FEI+ L + EK+ VA+++F +  VDWY WSHN
Sbjct: 79  DRSKYKKLEMPMFLGENPESWVYRTEHFFEINNLPKAEKVKVAVVNFGQDEVDWYCWSHN 138

Query: 79  RKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETV 138
           RK++ S  DLKGR+F+ FR S + SL AR + I+Q  S  +Y+K+F  Y APLP + E+V
Sbjct: 139 RKKVESWEDLKGRMFEFFRDSGQKSLGARLIRIQQDGSYNDYVKKFVTYSAPLPYMAESV 198

Query: 139 LENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMG 198
           L + F+ G +P ++A V+SR P  LEE M EAQL+  +     + + E    +   EG G
Sbjct: 199 LVDAFVTGLEPSLQAEVISRHPQTLEECMKEAQLVNDKNLALKFTIMELGMAEWD-EG-G 258

Query: 199 PSTAKKT 206
            ST KKT
Sbjct: 259 SSTGKKT 263

[Close]

BLAST of Spg036824 vs. ExPASy TrEMBL
Match: A0A5A7T3B8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00740 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.0e-40
Identity = 81/182 (44.51%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 8   EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISF 67
           E ++ P   GG  D+S +K+LEMPVF+G+NP+SW+++ + YF+I++L + EK+ V ++SF
Sbjct: 66  ETDITPSSAGGSSDKSMYKKLEMPVFNGENPESWIYQAKHYFDINELADEEKVKVVVVSF 125

Query: 68  DEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIKRFK 127
               V+W+RWS+NRK+I+S  DLK R+F+HF+ S EGSL AR + I+Q    A+Y+K+F 
Sbjct: 126 GPDAVNWFRWSNNRKKISSWEDLKKRMFEHFKASGEGSLGARLIRIRQDGLYADYLKKFL 185

Query: 128 VYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLK 187
            Y APLPE+ E+VL + F+ G +  ++A V+SR P+ LE+ M EAQ++    +     L 
Sbjct: 186 EYSAPLPEMAESVLIDAFITGLETNLQAEVISRHPMALEDCMREAQMVSDRDYAIKLALN 245

[Close]

BLAST of Spg036824 vs. ExPASy TrEMBL
Match: A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.5e-40
Identity = 87/176 (49.43%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 7   KEGEVEP-PKVGG---DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAI 66
           K  E EP  ++ G   DRSK+K+LEMP+F G+NP+SW++R E +FEI+ L+E EK+ VA+
Sbjct: 64  KMDETEPITEINGTVTDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLSESEKVKVAV 123

Query: 67  ISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMAEYIK 126
           +SF +  VDWYRWSHNRK++ S  DLK R+F+ FR S + SL AR + I+Q+ S  EY+K
Sbjct: 124 VSFGQDEVDWYRWSHNRKKVESWEDLKSRMFEFFRDSGQKSLGARLIRIQQEGSYNEYVK 183

Query: 127 RFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETW 179
           +F  Y APLP + E+VL + F+ G +P ++A V+SR P  LE+ M EAQL+    +
Sbjct: 184 KFVTYSAPLPYMAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNY 239

The following BLAST results are available for this feature:

BLAST of Spg036824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893564.1	1.3e-42	51.76	uncharacterized protein LOC120082453 [Benincasa hispida]	[more]
XP_031745528.1	5.4e-41	42.15	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]
KAA0056659.1	4.6e-40	41.06	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK22652.1	4.6e-40	45.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067146.1	7.8e-40	48.13	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97452.1 ty3-gyp...	[more]

BLAST of Spg036824 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg036824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DGC7	2.2e-40	45.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UT21	2.2e-40	41.06	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BC89	3.8e-40	48.13	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T3B8	5.0e-40	44.51	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UYM1	6.5e-40	49.43	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Spg036824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 61..146 e-value: 5.3E-7 score: 29.8
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 196..281 e-value: 7.6E-7 score: 31.1
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 209..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 209..366
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 209..366

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036824.1	Spg036824.1	mRNA