Spg036315 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg036315
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionp55
Locationscaffold5: 43427816 .. 43429687 (+)
RNA-Seq ExpressionSpg036315
SyntenySpg036315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGACTACCACCACAAAGTTATCGGCAATGCACTCCATTCTCCCCCATCATCGCCCACTAAAACCCGACCAACAAAAACAAGCTCCCCCAACAACGAGCCGGCAACGCCGCTCATTACTCCAGTAGCCCCCAGTAAGAAGAGGCCGGCGCCTAGCCCCAGCGACAGCTTCGAAAATGAGCGGCCATCACACAGGCAACGAATCGACAGCTCGGCCGATGGAAACAAGCTGGACTTTGGCGAGGGAGGTTCGAGATCGGCCCCATTGGATGGTTTGGCGGCAAACATGGAGCAAATGGTTAAGATGCTGAGAAGGGTCGGCGCCACGAAGGGTTTGATCAGTGATCCTGTGATGGCTTGTCTTTTGTCTGCACAGACTGTGGTCATGGCCTGCACTGCCGAGCTTATCTCCAGGACAGCGCCACCAGGCCAGCAGAGTAAAGCTTCTTTTAGTTCTATTAACAGAGCTGCTAATGGGGCTGTAGAGAAGAAGAACATTAAGAGGCCAGAACTGAAGAAGTAATTAATCAGCTCATAACAGTTGTTCTTCAAGCAGATTTGGAGAAGTGTTTGGTATGTTATGTTTAATGGATCCATATCTCGTGGTCTCTTTAATCTTTTTTTTTTTTTTTTTCTCTACATTTATGTTTGGTTTAGTATTTTCCCCCCAATTTTCTACCTTTAGTTTCCATCTTGTAGTGGAGGGTAGAAATAATTATTGTAGTTGACTGTTGGTATTGATAAAATATATTTTTAATAGAAATGCCTTATTATGAGGCCTAGTCTTTGGATCAGCAGCCATACATGTCAGAGACTCAGATCAGAGTTAGAAATTTTCGATATTTCCATTTTAAAAATATAGAAAAAGTAGATTTATAAGACAACTTTGATTGGTCAAAAAAAAAAAAAAAAAAAAAAGACAACTTTGAAGTTTTTACGATTCTTTAAGAAATATAATCGCATGCTCCTATATAGAAATTTTCCTATAAATTAACCGATGTATATTTTTTTTTTTTTTGAGTTCAACAATATTTTGAGGCAAAGAATTCTCTGATGTCTTTATCGATAGTAAATGTCAATTATCGTTGAGTTATGTTCACTTTGATAACCAACCTGAAATTACTCCAAACTAATTGTATTTCATTTTGAAGCTTTTAATAAATGGACTATTGAAAAAAAGGTACAAATTAACCTAGTTAGACCAAAATGAGCATAGATTAGTAGCAATTGCCTTGTAGTTTCGAAACCCCTCCTCAAATGTTGTTGAACTTCTTGATGCCAAAATCCGGGCAGGGGGAACTCACCTGACCTTCACGTGCCACCAACGGTAAATTTGTTTGAAGGGGAAAGACGCGATCTGCAAGACAAGGAAACCTGCACACTGTTGTGGTGCTTGCCACACCGCTTCCGATGCTTAAGTCAGTAAGGAGTAAGATGAGAGAGCAAGAGAGCAAGAGGAGGAGTAGAATTCAGAGAGTTAGTTTCGGGATCCTCTTCAATGATGAGGAAGGGTTTATATACTTTTTCCTGTCTTAGGGTTTCTAGGCGTTTGGAGACGACTCGGGACTGAACCAAGTCAAATCGGACTGACCCAGGACACAGGGAACTGAGCGGAGGGAGAAAAACTCGACCCACTCAAGTGGGTCGAGGATCGACTTCTACCCAGCCCAAACTTCTCGGCCTTGCCCAAACTTTTGGGTTGGCTGACCATGGGATTGGGTCCTCCTTTTCTGTGGGTCCGCTTCCTGGTCATACCCTCGGATTGGTACTGTGCTATCCTTCTCAGTTTCTTGATTCCTGGAGCGGTCCAGAATTACCTATAACAGAACTAAAAGAAATTGAACTAGGGTTTTTCAAAGAGGTACTTTAG

mRNA sequence

ATGGGCGACTACCACCACAAAGTTATCGGCAATGCACTCCATTCTCCCCCATCATCGCCCACTAAAACCCGACCAACAAAAACAAGCTCCCCCAACAACGAGCCGGCAACGCCGCTCATTACTCCAGTAGCCCCCAGTAAGAAGAGGCCGGCGCCTAGCCCCAGCGACAGCTTCGAAAATGAGCGGCCATCACACAGGCAACGAATCGACAGCTCGGCCGATGGAAACAAGCTGGACTTTGGCGAGGGAGGTTCGAGATCGGCCCCATTGGATGGTTTGGCGGCAAACATGGAGCAAATGGTTAAGATGCTGAGAAGGGTCGGCGCCACGAAGGGTTTGATCAGTGATCCTGTGATGGCTTGTCTTTTGTCTGCACAGACTGTGGTCATGGCCTGCACTGCCGAGCTTATCTCCAGGACAGCGCCACCAGGCCAGCAGAGTAAAGCTTCTTTTAGTTCTATTAACAGAGCTGCTAATGGGGCTGTAGAGAAGAAGAACATTAAGAGGCCAGAACTGAAGAAGGGAAAGACGCGATCTGCAAGACAAGGAAACCTGCACACTGTTGTGGTGCTTGCCACACCGCTTCCGATGCTTAAGTCAGTAAGGAGACACAGGGAACTGAGCGGAGGGAGAAAAACTCGACCCACTCAAGTGGGTCGAGGATCGACTTCTACCCAGCCCAAACTTCTCGGCCTTGCCCAAACTTTTGGGTTGGCTGACCATGGGATTGGGTCCTCCTTTTCTGTGGGTCCGCTTCCTGGTCATACCCTCGGATTGGTACTGTGCTATCCTTCTCAGTTTCTTGATTCCTGGAGCGGTCCAGAATTACCTATAACAGAACTAAAAGAAATTGAACTAGGGTTTTTCAAAGAGGTACTTTAG

Coding sequence (CDS)

ATGGGCGACTACCACCACAAAGTTATCGGCAATGCACTCCATTCTCCCCCATCATCGCCCACTAAAACCCGACCAACAAAAACAAGCTCCCCCAACAACGAGCCGGCAACGCCGCTCATTACTCCAGTAGCCCCCAGTAAGAAGAGGCCGGCGCCTAGCCCCAGCGACAGCTTCGAAAATGAGCGGCCATCACACAGGCAACGAATCGACAGCTCGGCCGATGGAAACAAGCTGGACTTTGGCGAGGGAGGTTCGAGATCGGCCCCATTGGATGGTTTGGCGGCAAACATGGAGCAAATGGTTAAGATGCTGAGAAGGGTCGGCGCCACGAAGGGTTTGATCAGTGATCCTGTGATGGCTTGTCTTTTGTCTGCACAGACTGTGGTCATGGCCTGCACTGCCGAGCTTATCTCCAGGACAGCGCCACCAGGCCAGCAGAGTAAAGCTTCTTTTAGTTCTATTAACAGAGCTGCTAATGGGGCTGTAGAGAAGAAGAACATTAAGAGGCCAGAACTGAAGAAGGGAAAGACGCGATCTGCAAGACAAGGAAACCTGCACACTGTTGTGGTGCTTGCCACACCGCTTCCGATGCTTAAGTCAGTAAGGAGACACAGGGAACTGAGCGGAGGGAGAAAAACTCGACCCACTCAAGTGGGTCGAGGATCGACTTCTACCCAGCCCAAACTTCTCGGCCTTGCCCAAACTTTTGGGTTGGCTGACCATGGGATTGGGTCCTCCTTTTCTGTGGGTCCGCTTCCTGGTCATACCCTCGGATTGGTACTGTGCTATCCTTCTCAGTTTCTTGATTCCTGGAGCGGTCCAGAATTACCTATAACAGAACTAAAAGAAATTGAACTAGGGTTTTTCAAAGAGGTACTTTAG

Protein sequence

MGDYHHKVIGNALHSPPSSPTKTRPTKTSSPNNEPATPLITPVAPSKKRPAPSPSDSFENERPSHRQRIDSSADGNKLDFGEGGSRSAPLDGLAANMEQMVKMLRRVGATKGLISDPVMACLLSAQTVVMACTAELISRTAPPGQQSKASFSSINRAANGAVEKKNIKRPELKKGKTRSARQGNLHTVVVLATPLPMLKSVRRHRELSGGRKTRPTQVGRGSTSTQPKLLGLAQTFGLADHGIGSSFSVGPLPGHTLGLVLCYPSQFLDSWSGPELPITELKEIELGFFKEVL
Homology
BLAST of Spg036315 vs. NCBI nr
Match: KAG6584107.1 (hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-18
Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 0

Query: 8   VIGNALHSPPSSPTKTRPTKTSSPNNEPATPLITPVAPSKKRPAPSPSDSFENERPSHRQ 67
           VI   + S P SP  +  +K + P + P  P+   +  S+KR APSP  + E+E P+ R+
Sbjct: 7   VISEIIFSAPRSPRPSTDSKETEPIS-PPNPVTPNLRGSRKRSAPSPMSNPEHEPPTQRR 66

Query: 68  RIDSSADGNKLDFGEGGS-RSAPLDGLAANMEQMVKMLRRVGATKGLISDPVMACLLSAQ 127
           R   S DGNKL++GE     S PL  L  NME++VK L+RVG  +GL+ DP++ CL+S+Q
Sbjct: 67  R--DSGDGNKLEYGEDADWSSIPLARLIGNMEEVVKSLKRVGGQEGLMIDPLLGCLVSSQ 126

Query: 128 TVVMACTAELISRT-APPGQQSKASFSSINRAANGAVEKKNIK 169
           T +M C A LISRT  PPGQQ K   +S NRA      KKN+K
Sbjct: 127 TSMMLCLAHLISRTPPPPGQQRKGCPTSTNRAV-----KKNMK 161

BLAST of Spg036315 vs. NCBI nr
Match: KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 8.3e-13
Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 0

Query: 9   IGNALHSPPSSPTKTRPTKTSSPNN-EPATPLITPVAPSKKRPAP-SPSDSFENERPSHR 68
           + + + +PPSSP+K    K    ++ EP TP   PV   KKRPAP SP+D F+++RP  +
Sbjct: 7   LAHGIFNPPSSPSKKNTPKFPGRSSVEPQTP--DPV-HGKKRPAPVSPNDDFQHDRPPTQ 66

Query: 69  QRIDSSADGNKLDFGEGGSRSAPLDGLAANMEQMVKMLRRVGATKG-LISDPVMACLLSA 128
           +R   +A+       EG S   P+  L   +E MVKML+RVG  K  L+SDP++AC +SA
Sbjct: 67  KRKTDNAE-------EGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSA 126

Query: 129 QTVVMACTAELISRT---APP--GQQSKAS--FSSINRAANGAVEKKNIKR 170
           Q ++ ACTAELISR+   A P   Q S  S  + S   AA G+ E K IK+
Sbjct: 127 QALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKK 167

BLAST of Spg036315 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-08
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 0

Query: 2   GDYHHKVIGNALHSPPSSP-TKTRPTKTSSPNNEPATPLITPVAPSKKRPAP-SPSDSFE 61
           G+++H VI +A+ +PP SP  K  P  T S + EP TP        KKRPA  SP+D  E
Sbjct: 3   GEFNH-VIHHAIFNPPLSPGRKNAPKVTESSSVEPHTP---DAVLGKKRPASVSPNDVSE 62

Query: 62  NERPSHRQRIDSSADGNKLDFGEGGSRSAPLDGLAANMEQMVKMLRR-VGATKGLISDPV 121
           ++ P  ++    +A+       +  S   P+  L   +E M+KML+R V     L+SDP+
Sbjct: 63  HDHPPTQKPKTDNAE-------KASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPL 122

Query: 122 MACLLSAQTVVMACTAELISRTA---PPGQQSKASFSSIN 156
           +AC +SAQT++MACTAEL+S++     P    + S SSIN
Sbjct: 123 LACFVSAQTLLMACTAELLSKSTGKKKPPLVHQHSDSSIN 151

BLAST of Spg036315 vs. ExPASy TrEMBL
Match: A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-13
Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 0

Query: 9   IGNALHSPPSSPTKTRPTKTSSPNN-EPATPLITPVAPSKKRPAP-SPSDSFENERPSHR 68
           + + + +PPSSP+K    K    ++ EP TP   PV   KKRPAP SP+D F+++RP  +
Sbjct: 7   LAHGIFNPPSSPSKKNTPKFPGRSSVEPQTP--DPV-HGKKRPAPVSPNDDFQHDRPPTQ 66

Query: 69  QRIDSSADGNKLDFGEGGSRSAPLDGLAANMEQMVKMLRRVGATKG-LISDPVMACLLSA 128
           +R   +A+       EG S   P+  L   +E MVKML+RVG  K  L+SDP++AC +SA
Sbjct: 67  KRKTDNAE-------EGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSA 126

Query: 129 QTVVMACTAELISRT---APP--GQQSKAS--FSSINRAANGAVEKKNIKR 170
           Q ++ ACTAELISR+   A P   Q S  S  + S   AA G+ E K IK+
Sbjct: 127 QALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKK 167

BLAST of Spg036315 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-08
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 0

Query: 2   GDYHHKVIGNALHSPPSSP-TKTRPTKTSSPNNEPATPLITPVAPSKKRPAP-SPSDSFE 61
           G+++H VI +A+ +PP SP  K  P  T S + EP TP        KKRPA  SP+D  E
Sbjct: 3   GEFNH-VIHHAIFNPPLSPGRKNAPKVTESSSVEPHTP---DAVLGKKRPASVSPNDVSE 62

Query: 62  NERPSHRQRIDSSADGNKLDFGEGGSRSAPLDGLAANMEQMVKMLRR-VGATKGLISDPV 121
           ++ P  ++    +A+       +  S   P+  L   +E M+KML+R V     L+SDP+
Sbjct: 63  HDHPPTQKPKTDNAE-------KASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPL 122

Query: 122 MACLLSAQTVVMACTAELISRTA---PPGQQSKASFSSIN 156
           +AC +SAQT++MACTAEL+S++     P    + S SSIN
Sbjct: 123 LACFVSAQTLLMACTAELLSKSTGKKKPPLVHQHSDSSIN 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584107.11.7e-1845.40hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN64496.18.3e-1342.69hypothetical protein Csa_013860 [Cucumis sativus][more]
KAA0056836.12.1e-0838.75p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LX144.0e-1342.69p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1[more]
A0A5D3BJN21.0e-0838.75p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg036315.1Spg036315.1mRNA