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Spg035704 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTAGTTTACTATTTCAATACGATGACCTAGGTAACTCAGTTTTAATCCTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAATACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGAAGAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCGAGAGGGACTTTCTGTTTAATGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTCAGGAGACAGATGTAACACAAGGGTAAAACGGTAATTTGACCCAGCCGTGATTACGAACACTCGTGAAGGATTGACTTACCGGCATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACCTGACTAATGAGTTTAATTTATTAACCTCATATCATTGGAGCTTCTGATCTATAAGTCCATTAGGTCCCCCTGCTAGCTCGTAAAGAGTAATTAGGAACAAATATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAGTGATGCATTAAAATATAAAGTCTAATTTGAGATTAAACTTTATTATATTGAGAGATTGATATATTTGAAAGAGTTCAAATATATGTCTAATTAAATATATGGTATTTAATTAGAAGATGAATTAATTAATTATGAATTAATTAATTATTCAATTTAGTTTAAATTAAATGAGATTTAATTAAACTATAGTCTATGAGAGAAATAAATATTTGAAGAAGTTCAAATATTAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTTGAAGGAGTTCAAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCCTGAAATTAAATATATATATTTAATTGGGTAATTAATTAATTAACTAATAGAAGGTCTGAAATTAAATATATGATATTTAATTGGTGATTAATTAATTTAAAGAATTAATTAATTGGAAATTAATCAATTATGAAAATGATTAATTACTTATGGAAGTAATTAATCATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCATTTATGGAAAAGATTAATCAATTATGGAATTGATTGGTTATGGAATTGATTAATTATGGAAAAGATTAAATCAATTATGGAAATAATTGATTTTAAATGAATATTTTATTCATGGCCTTTCTCCTATAAATAGAACACTAACCCTAGGGTTTATGTGATACAACATATGGCCACCATAAGGCCCTCTCATATATTCTCTCAACTCAAGAACTCTAGGGAGAATTTTCTCTCTAGAGTTTTTCCCATTCAAGATTAGGTAGTCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAAACAAGAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGGTATGTTTCTCACCGCTTAACCTTTTGCCAATGCATTGGTATTTTGTAGAACAAAATTAATTTACGAACGGTCCAATTGCTTCCGCTGTAACGGAATTGGGAATTCCATTCCTACAATTGGTATCAGAGCCGATCGTAATTTCAATTTTGTTTAACAAAATTTGCATTGGTTGATTGGTGGGTTTAATTTATGCATTTGATGTATGAAATTTTGCTAGTAGATGTTTAAGGTTTTGGCATTAGATTTTGCAATTTTTTGTTGATTTGATCAATGTAAGGGCCCGATGTTTTGGGCGTTTTGTTGCAAATCGAGTCTGTAAGTCCGTGTATATCGATTGTGGCTGTTTTTTCTGTGAATGTCGGTGAAGATTGGGACCAAAATCGAAGAAGATTGCTGCTGAAAATTGAATTTTCTGGTGGCTGAAGCTCGAAGTGAAAATAAAATAAATAATATAAAAACGGTTAAATTTAAAGAAGAGCTCGCGTGGGTTTGTTGGTTTAATCTCTGTTTGTGTGCTTGGAGGTCATGGGTTCGAGCTTGGACTAGGGCAGTTTTGTTCGAATTAATTATTTTATCTCTCCTCGTGCGTGTGGGCCGTTCGTGGACCGCTAATGCGTATTTTGGGCCATAACTCCGGAAGCGTTCATGGGCCTTTATTCCAAAGCTGTCCAGTTCGTCAGTTATGGTTTGGTTGCGGTCCGGTTAGCATTTGACCGGTTCTTGACTGGTTCAGCTGGGGTTTGA ATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAATACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGAAGAAGTAGATGAGTCCGTGATTACGAACACTCGTGAAGGATTGACTTACCGGCATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGCAAACAAGAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGGGCCCGATGTTTTGGGCGTTTTGTTGCAAATCGAGTCTTTCGTCAGTTATGGTTTGGTTGCGGTCCGGTTAGCATTTGACCGGTTCTTGACTGGTTCAGCTGGGGTTTGA ATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAATACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGAAGAAGTAGATGAGTCCGTGATTACGAACACTCGTGAAGGATTGACTTACCGGCATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGCAAACAAGAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGGGCCCGATGTTTTGGGCGTTTTGTTGCAAATCGAGTCTTTCGTCAGTTATGGTTTGGTTGCGGTCCGGTTAGCATTTGACCGGTTCTTGACTGGTTCAGCTGGGGTTTGA MRAGVSYAMSLHKTGPRNSKPLDVTPLTTWVRVANTPTQYAFLFGDNTEWEAGDMTTQEGIHSFPHLEEVDESVITNTREGLTYRHRSISVDTEMFYSEKSSASKQESSVEVFRVVNGGPDVLGVLLQIESFVSYGLVAVRLAFDRFLTGSAGV Homology
BLAST of Spg035704 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]) HSP 1 Score: 59.3 bits (142), Expect = 3.4e-05 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0
BLAST of Spg035704 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.9 bits (141), Expect = 4.4e-05 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of Spg035704 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04 Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0
BLAST of Spg035704 vs. NCBI nr
Match: TYK26313.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04 Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of Spg035704 vs. NCBI nr
Match: TYK27885.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0
BLAST of Spg035704 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0
BLAST of Spg035704 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of Spg035704 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04 Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0
BLAST of Spg035704 vs. ExPASy TrEMBL
Match: A0A5A7VKV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001280 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04 Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of Spg035704 vs. ExPASy TrEMBL
Match: A0A5D3DRR2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00930 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04 Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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