Spg035040 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035040
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	stress-induced protein KIN2-like
Location	scaffold3: 27873374 .. 27874496 (-)
RNA-Seq Expression	Spg035040
Synteny	Spg035040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTTCAAGCGTCCCTTTTAAATTTCTCAACTTTGGTATTTTAAATCTCTCAAAAAAGAAATGGACAACTCTGAAAAGATGAGCTACCACGCTGGAGAAGCCAAGGGTCAAGCTTTCTCATTTGTTGCTTTTGTTTTCCAAGTTCAGGTTTCACATACATTGCTTTTGGTTTTATTAGGAAAAAAAGTTGTTTGATACTATTGATGATGTAGTTATTACAAGTGACAATAGTACAACAATATGAAGTTATATTACAATGTAGATTCACTATCATCACACATTATATTATTTTTGGTGTTTTTTAATCTCTCTTCGAATGAAAAATGGCCGACAACTCTCACAATATGAGTTACCATGAGGGGCCAAACTCACGTTCTCTATCCATTGTCTTCATTTTCTTTCCAGAGAAACAGTTTGATACTGCATTAATATCATATTATTGTCATTTATATTCAATCATATCATTATTTTGTTTAGCGGGTTAGCTTATTCAATTTTTAACGACTGATGACATAACTAAGTAATATTATCATAGAGTTTTTACATTCTATAAGAGTATCATCATCCTACTGATCACTTATAATCATTTGATTTATTACCATATGAACACATGGGTGGTATGATTGAATATAAATGACAATTGTTGAAAGACATCCCACATATTTATTTCGTGATATCGATGATTAAGGGGTGGTCACATGTTAGTATATGTCCATAGGAGAAGGTGAGCAATATGATGGACAAGGCAAGTGATGCAGCTCAATCAACTAAGGAGTCATTACAAGAGACTGGACAACAAATGAAGGCTAAGGCACAAGGAGCAGTAGATGCTGTCAAGGATGCTGTGAATAAATGAGGCCACCTCTTTCCTACATTTCTATTAATTTACTTGAATGCTCTTTTTTGCGGAAGGCTTTTTCTTTTCTTTTTACTATTTTTAAATATATTCAGTGTTGGATTTACTTCCAACCTTTCCTTTCTCTTTATGCGAGAAGAAGACTAATTAGAAAGAGTTCTTTTTGACTCATGGGATTTGTTTGCTTCATCAGTTTTTAGGAGGGTTGTCACAATGACATATGTTGTAAACAAATTAGACAGCTCTTTGTTGGTTTTTTTTTGTG

mRNA sequence

ATGGACAACTCTGAAAAGATGAGCTACCACGCTGGAGAAGCCAAGGGTCAAGCTTTCTCATTTGTTGCTTTTGTTTTCCAAGTTCAGGAGAAGGTGAGCAATATGATGGACAAGGCAAGTGATGCAGCTCAATCAACTAAGGAGTCATTACAAGAGACTGGACAACAAATGAAGGCTAAGGCACAAGGAGCAGTAGATGCTGTCAAGGATGCTGTGAATAAATGA

Coding sequence (CDS)

ATGGACAACTCTGAAAAGATGAGCTACCACGCTGGAGAAGCCAAGGGTCAAGCTTTCTCATTTGTTGCTTTTGTTTTCCAAGTTCAGGAGAAGGTGAGCAATATGATGGACAAGGCAAGTGATGCAGCTCAATCAACTAAGGAGTCATTACAAGAGACTGGACAACAAATGAAGGCTAAGGCACAAGGAGCAGTAGATGCTGTCAAGGATGCTGTGAATAAATGA

Protein sequence

MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKAQGAVDAVKDAVNK

Homology

[Close]

BLAST of Spg035040 vs. NCBI nr
Match: XP_038891163.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-18
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDNS+KMSYHAGEAKGQA          QEKVSNMMDKA+DAAQSTKES+QE GQQ+KAK
Sbjct: 1  MDNSQKMSYHAGEAKGQA----------QEKVSNMMDKANDAAQSTKESMQEAGQQIKAK 60

Query: 61 AQGAVDAVKDAVNK 75
          AQGA +AVKDAVNK
Sbjct: 61 AQGAAEAVKDAVNK 64

[Close]

BLAST of Spg035040 vs. NCBI nr
Match: XP_038891080.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDNS+KMSYHAGEAKG          Q QEKVSNMMDKASDAAQS KES+QE GQQ+KAK
Sbjct: 1  MDNSQKMSYHAGEAKG----------QTQEKVSNMMDKASDAAQSAKESIQEAGQQVKAK 60

Query: 61 AQGAVDAVKDAVNK 75
          AQGA DAVKDA+NK
Sbjct: 61 AQGATDAVKDAINK 64

[Close]

BLAST of Spg035040 vs. NCBI nr
Match: XP_008459449.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0039404.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa] >TYK00592.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDNS+KMSYHAGEAKG          Q QEKVSNMMDKAS+AAQSTKES+QE GQQM AK
Sbjct: 1  MDNSQKMSYHAGEAKG----------QTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAK 60

Query: 61 AQGAVDAVKDAVNK 75
          AQGA DAVKDAVNK
Sbjct: 61 AQGATDAVKDAVNK 64

[Close]

BLAST of Spg035040 vs. NCBI nr
Match: XP_038891124.1 (late embryogenesis abundant protein 7-like [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDNS+KMSYHAGEAKGQA          QEK+SNMMDKA DAAQS KES+QE GQQMKAK
Sbjct: 1  MDNSQKMSYHAGEAKGQA----------QEKLSNMMDKAGDAAQSAKESVQEVGQQMKAK 60

Query: 61 AQGAVDAVKDAVNK 75
           QGA DAVKDA+NK
Sbjct: 61 VQGAADAVKDAINK 64

[Close]

BLAST of Spg035040 vs. NCBI nr
Match: XP_004141485.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical protein Csa_008504 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-17
Identity = 56/73 (76.71%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2  DNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKA 61
          DNS+KMSYHAGEAKG          Q QEK+SNMMDKASDAAQS KES+QETGQQM AKA
Sbjct: 3  DNSQKMSYHAGEAKG----------QTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKA 62

Query: 62 QGAVDAVKDAVNK 75
          QGA DAVKDAVNK
Sbjct: 63 QGAADAVKDAVNK 65

[Close]

BLAST of Spg035040 vs. ExPASy TrEMBL
Match: A0A5D3BPC0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002090 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDNS+KMSYHAGEAKG          Q QEKVSNMMDKAS+AAQSTKES+QE GQQM AK
Sbjct: 1  MDNSQKMSYHAGEAKG----------QTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAK 60

Query: 61 AQGAVDAVKDAVNK 75
          AQGA DAVKDAVNK
Sbjct: 61 AQGATDAVKDAVNK 64

[Close]

BLAST of Spg035040 vs. ExPASy TrEMBL
Match: A0A1S3CA67 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDNS+KMSYHAGEAKG          Q QEKVSNMMDKAS+AAQSTKES+QE GQQM AK
Sbjct: 1  MDNSQKMSYHAGEAKG----------QTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAK 60

Query: 61 AQGAVDAVKDAVNK 75
          AQGA DAVKDAVNK
Sbjct: 61 AQGATDAVKDAVNK 64

[Close]

BLAST of Spg035040 vs. ExPASy TrEMBL
Match: A0A0A0KXN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.9e-18
Identity = 56/73 (76.71%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2  DNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKA 61
          DNS+KMSYHAGEAKG          Q QEK+SNMMDKASDAAQS KES+QETGQQM AKA
Sbjct: 3  DNSQKMSYHAGEAKG----------QTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKA 62

Query: 62 QGAVDAVKDAVNK 75
          QGA DAVKDAVNK
Sbjct: 63 QGAADAVKDAVNK 65

[Close]

BLAST of Spg035040 vs. ExPASy TrEMBL
Match: A0A6J1E333 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026035 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.8e-17
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 2  DNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKA 61
          DNS KMSYHAGEAKGQA          QEK SNMMDKASDAAQSTKES+QE GQQMKAKA
Sbjct: 3  DNSRKMSYHAGEAKGQA----------QEKASNMMDKASDAAQSTKESVQEAGQQMKAKA 62

Query: 62 QGAVDAVKDA 72
          QGA+DAVKDA
Sbjct: 63 QGALDAVKDA 62

[Close]

BLAST of Spg035040 vs. ExPASy TrEMBL
Match: A0A6J1BXE6 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006564 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  DNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKA 61
          DNS+KM+YHAGEAKGQA          QEK SN+MDK  DAAQS KES+QE GQQMKAKA
Sbjct: 3  DNSQKMAYHAGEAKGQA----------QEKASNLMDKVDDAAQSAKESVQEAGQQMKAKA 62

Query: 62 QGAVDAVKDAVNK 75
          QGAVDAVKDA NK
Sbjct: 63 QGAVDAVKDAANK 65

[Close]

BLAST of Spg035040 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-13
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 3  NSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKAQ 62
          NS+ +S+ AG+AKG          Q QEK S MMDKAS+AAQS KESL+ETGQQ+K KAQ
Sbjct: 4  NSQNISFQAGQAKG----------QTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQ 62

Query: 63 GAVDAVKDA 72
          GA ++VK+A
Sbjct: 64 GATESVKNA 62

[Close]

BLAST of Spg035040 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-12
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 2  DNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAKA 61
          +NS+ MS++AG+AKG          Q QEK SN++DKAS+AAQS KES+QE GQQ+K KA
Sbjct: 3  NNSQSMSFNAGQAKG----------QTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKA 61

Query: 62 QGAVDAVKD 71
          QGA + +K+
Sbjct: 63 QGASETIKE 61

[Close]

BLAST of Spg035040 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-12
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MDNSEKMSYHAGEAKGQAFSFVAFVFQVQEKVSNMMDKASDAAQSTKESLQETGQQMKAK 60
          MDN +  SY AG+A G          Q +EK   MMDKA DAA S ++SLQ+TGQQMK K
Sbjct: 1  MDNKQNASYQAGQATG----------QTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEK 60

Query: 61 AQGAVDAVKD 71
          AQGA D VKD
Sbjct: 61 AQGAADVVKD 60

The following BLAST results are available for this feature:

BLAST of Spg035040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891163.1	2.2e-18	77.03	stress-induced protein KIN2-like [Benincasa hispida]	[more]
XP_038891080.1	4.8e-18	75.68	late embryogenesis abundant protein 2-like [Benincasa hispida]	[more]
XP_008459449.1	8.2e-18	77.03	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0039404.1 stress-...	[more]
XP_038891124.1	1.4e-17	74.32	late embryogenesis abundant protein 7-like [Benincasa hispida]	[more]
XP_004141485.1	1.8e-17	76.71	late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical...	[more]

BLAST of Spg035040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg035040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPC0	4.0e-18	77.03	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CA67	4.0e-18	77.03	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV...	[more]
A0A0A0KXN2	8.9e-18	76.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1	[more]
A0A6J1E333	5.8e-17	78.57	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026035 ...	[more]
A0A6J1BXE6	1.3e-16	72.60	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006564 ...	[more]

BLAST of Spg035040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38760.1	3.8e-13	59.42	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	1.9e-12	55.07	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	3.2e-12	55.71	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 13..74 e-value: 5.9E-6 score: 28.2
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..72
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035040.1	Spg035040.1	mRNA