Spg035002 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035002
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Locationscaffold3: 24134623 .. 24137988 (+)
RNA-Seq ExpressionSpg035002
SyntenySpg035002
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCAAAGTTGCAGCAGCAGGAGGAGCAGAGTAGAATAGTAGCTGATGCTCTATGGTTTTCAAAAGCCATGGCCTGCCAGATTAGAGATGAGCAGCTGGCTGAAGACAGAAAAAGAAAGAAGGAAGCGGAAAGGGAGACTAAGAGGAAGAAAATCGAAGAAGAAGAGCAAGCTACTCTAGACTTCGCAGCCGCTTGCTTGAAGGACTCAGTGGATACCACTGAGAAAGAAGAAGAAGAATTTATGCCCGCTTCTGAGGGCTATTCAAGAGAATTTGCAAAGAAGTTTGCGGTCGCAAATGTGGTGCAAACAAAGCAAGAAACTGAGTCTGCACTAGATCCTGAAGTGCATTCTAAAGTGCAAGTCCCACCACCACCAAAAGAGGATGAAAATGTGCTTGAGGACTTGTTCGAGCACCAGAAGGAAGCAATGTTTGAGGTCCTGTTCGAACATGGGCAAGAAGAGGATCAACAAGCTCCAATTGATGAAGAAGAGGTCCTTGAGATCTCAAGGGACCAAATGCCCAGGAGGGGCAGAAACGAAGGTGATGGCAGTGCAGCTGAAGGGAGAACTAAGAAAAGAAAAAGAGTAGAGAGTTCCCTGAGGAGGCCTAGCACTAGGGGAACGACTTCTGTGTTTTCCCAAGCAAAGACACCACCATCACCGCCACCAGTGAAGAGAGAACAATCTGTTCCTCGGTCGAAGAAGACTTCAACAAAGGAGCCGAGGATGGAAATGCAAGTGGAAGCTCACCCAGACGCTCAGACCCGACTAGCTATCATGAAAAGGTGGGTTATGATGTGTGAAAAATCATTCTCCATGAAGACAGGTCCTCTCCCAACATTCATCGAGGATATTTTACGTAGGTATGGCTGTGAGCAGCTATGCAAGGAGCCAAAGGCTGCATCTATCCCATTGGTTCGAGAATTCTATGCGCAGAGAGGGGAAGAGATGCAGACGACCATGCTCATACGTGATCGGATGGTGGACTTTTCAGCAAGGTAGATAAATCGGATATTCTGACTGCCATCCCTTAGATACCCAGCTGGCAACAAGGCCATTGAAGAACCAACTGATGAGCAGCTGGTCGAGGCCTTACAAATCGTGGCCCACGTGGGATTTAAGTGGTAGGAGTCCAGAACTGGAGTCAGGACTCTACTGTCAAGAGATTTGAAGCCAGAAGCAGCTGTCTGGCTGTACGTGATCAAGAATAGGATAATGCCAACAACACATGACACCACCATATCTCAAGAACGTGTCATGTTATTGTAGAGCATGCACAAGGGACTGAATCTGAACCTTGGACGAATCATATGGATGGAGATCCTCTCTTGTGGGCACAAGAATGTGGGAAGGCTATTCTTCCAAACCTTGATCACCAAGATATGCAGACTTGCAGGGATAGAGCCTGAGGAAAAAGAATAGAAAAAAGCCGCCCGAACTTCGATTGAATTGAGCTTAATCAAGAAGCTCATAGCCAATTCCAAGCAGAAGGTGACTTCACCTGAAAAGAAGGCTAAAGTAGCCTCTCCTACAACTCAACACTCAAAATCTCCTGAAGAAGCCACGACTGCAGTGGTGCGTCGTCAGCTAAATGGATGGATGTGAGATAAGATGATAAATAATAATAAAGATAAATTCAGCCAACCCTAGTGCAAGTATACACTGTCGCACGTAGTAATAAAAAACCTTAGAAGTATTCCAAGGGTATCGATCCCACGAGGACTAACTGGAAATTCAGATTTGAAGAAGAAACTGCTCAACTTGATTGCTTAAAGATAGGTAACCAAAGAAATAATATTGATGATTGGTTTTTAGAAAAAGTAAATAAAACAAGCATTGGGTCAGATTCATCCCAAAGGCAATAACCTTTATCATGGATTGTTTAATCTTAAGCCTATTCAATGCATTGGGTCAGATTTAACTTCTATTTGGCCTTGCTCCCAAGAATCGTTAGAAGGCTAAGCGAGTATCGTTATGCACATTTCTATGACTCGACTCCGTCATAGATAATTCACGAATGCAATCTATAACCCTATAGTCGATATAGGGTGCCTTAGGCAGCTTGCCCTATACCGCCGAACAATCTCTTTCGAGCTTTTTCTCCTATATCACCTTTATGAGAACCGATATCGTCTGTCCCTTTCGAGATCAAACTCACATAGCATTCAAAGTCTAAGTGATCAAGTTAAACTCAGCAAGATCAGAGTGATAATCAATAAAGAATGACATGCATTGAACAAAACTTAAGCAAATAAAACACTTTCAAGCTATTGAACCATAAGGGAATTCACCATATTGAACCCTTCAACGGAATTTAGCTACTCATGGTGAGATAAAGTGCAAATGAATACATTTTCATTGAAAATAAGAAGTAAAGAATACAGATAAATGAAAAGTATCAAAAGCTGGAAATAATGGAAGTAGCCAAATACTATGGGTTTTTATATTTATCCAATCCTTCTAGAGTTCGCTTAGACACTCCACTCTCTCGCTTTTACAAGTGGGAATGGGTGAAAATCCCTACAAACCCTAAGGTTTGATGTCTAACTCAGGTTAGAATTTAGTCATCTAAGAAGGACCTCGGGTATCCCTACTCATAGGCGTCAACTAGGGTTCTATCACCACCCTCTTCTTCCAAATGAGTTCTGCTTAAATTTGACTTCGAATCTTGAGCTTATATAGTGTGGGAAGTGGATGAGGAGCTGCGAAATAGGTGCTGGTAGGTAGCCCAGTCGGTTTCGGGGTCAAAACGACCGGTTAGGTGCGAAGAAGTCTCGTTCAAAAGGACCCGCGGATGACTCAGAACTGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCTCGCATTTCTGGGCAAATTCCAGCTTTTCCTCTGTTTTCTTGCACAACAACAAACTTAGTCAAATTCCCTTAAAATTAAGTCTTTTTAAGCACAAATGAGCACAATTTGACAAAAGTGAATCTCAACACCCTAACTTATCAACTTTAGCATATTTTGAGCTCGGGAATAGTAAAATTGATCTAAACATGCAATATTTGACAAAGAAATGAGCTAAATATAAGGGTAAAATAGGTATATTTTTTACCCTTATCATGCAGTAGGCGATGCGACCGCAAAATCATCACATAAATTACCAGATGCGGCTGCAAGTCAACAACAACCTCTAGTCCCTAAACCACAACCTGAAAATGATTTGGTGGTTTTAAGGAGAGACTTGGAGAAGATGAGGAGCCAGTTTAAGGAGTACCTGACCTATGCTAAAGAGCAAGATGGAGTTGTCAGATGCATCTTGGAGAATGTGGTGGATGATCTTGATGACTACCTTCCACCATTCCCCGAAATAAACTAG

mRNA sequence

ATGGGTCCAAAGTTGCAGCAGCAGGAGGAGCAGAGTAGAATAGTAGCTGATGCTCTATGGTTTTCAAAAGCCATGGCCTGCCAGATTAGAGATGAGCAGCTGGCTGAAGACAGAAAAAGAAAGAAGGAAGCGGAAAGGGAGACTAAGAGGAAGAAAATCGAAGAAGAAGAGCAAGCTACTCTAGACTTCGCAGCCGCTTGCTTGAAGGACTCAGTGGATACCACTGAGAAAGAAGAAGAAGAATTTATGCCCGCTTCTGAGGGCTATTCAAGAGAATTTGCAAAGAAGTTTGCGGTCGCAAATGTGGTGCAAACAAAGCAAGAAACTGAGTCTGCACTAGATCCTGAAGTGCATTCTAAAGTGCAAGTCCCACCACCACCAAAAGAGGATGAAAATGTGCTTGAGGACTTGTTCGAGCACCAGAAGGAAGCAATGTTTGAGGTCCTGTTCGAACATGGGCAAGAAGAGGATCAACAAGCTCCAATTGATGAAGAAGAGGTCCTTGAGATCTCAAGGGACCAAATGCCCAGGAGGGGCAGAAACGAAGGTGATGGCAGTGCAGCTGAAGGGAGAACTAAGAAAAGAAAAAGAGTAGAGAGTTCCCTGAGGAGGCCTAGCACTAGGGGAACGACTTCTGTGTTTTCCCAAGCAAAGACACCACCATCACCGCCACCAGTGAAGAGAGAACAATCTGTTCCTCGGTCGAAGAAGACTTCAACAAAGGAGCCGAGGATGGAAATGCAAGTGGAAGCTCACCCAGACGCTCAGACCCGACTAGCTATCATGAAAAGGTGGGTTATGATGTGTGAAAAATCATTCTCCATGAAGACAGGTCCTCTCCCAACATTCATCGAGGATATTTTACGTAGGTATGGCTGTGAGCAGCTATGCAAGGAGCCAAAGGCTGCATCTATCCCATTGGTTCGAGAATTCTATGCGCAGAGAGGGGAAGAGATGCAGACGACCATGCTCATACGTGATCGGATGGTGGACTTTTCAGCAAGGACTCTACTGTCAAGAGATTTGAAGCCAGAAGCAGCTGTCTGGCTGTACGTGATCAAGAATAGGATAATGCCAACAACACATGACACCACCATATCTCAAGAACGTGTCATCTTAATCAAGAAGCTCATAGCCAATTCCAAGCAGAAGGTGACTTCACCTGAAAAGAAGGCTAAAGTAGCCTCTCCTACAACTCAACACTCAAAATCTCCTGAAGAAGCCACGACTGCAGTGCCCAGTCGGTTTCGGGGTCAAAACGACCGGTTAGGTGCGAAGAAGTCTCGTTCAAAAGGACCCGCGGATGACTCAGAACTGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCTCGCATTTCTGGGCAAATTCCAGCTTTTCCTCTTAGGCGATGCGACCGCAAAATCATCACATAAATTACCAGATGCGGCTGCAAGTCAACAACAACCTCTAGTCCCTAAACCACAACCTGAAAATGATTTGGTGGTTTTAAGGAGAGACTTGGAGAAGATGAGGAGCCAGTTTAAGGAGTACCTGACCTATGCTAAAGAGCAAGATGGAGTTGTCAGATGCATCTTGGAGAATGTGGTGGATGATCTTGATGACTACCTTCCACCATTCCCCGAAATAAACTAG

Coding sequence (CDS)

ATGGGTCCAAAGTTGCAGCAGCAGGAGGAGCAGAGTAGAATAGTAGCTGATGCTCTATGGTTTTCAAAAGCCATGGCCTGCCAGATTAGAGATGAGCAGCTGGCTGAAGACAGAAAAAGAAAGAAGGAAGCGGAAAGGGAGACTAAGAGGAAGAAAATCGAAGAAGAAGAGCAAGCTACTCTAGACTTCGCAGCCGCTTGCTTGAAGGACTCAGTGGATACCACTGAGAAAGAAGAAGAAGAATTTATGCCCGCTTCTGAGGGCTATTCAAGAGAATTTGCAAAGAAGTTTGCGGTCGCAAATGTGGTGCAAACAAAGCAAGAAACTGAGTCTGCACTAGATCCTGAAGTGCATTCTAAAGTGCAAGTCCCACCACCACCAAAAGAGGATGAAAATGTGCTTGAGGACTTGTTCGAGCACCAGAAGGAAGCAATGTTTGAGGTCCTGTTCGAACATGGGCAAGAAGAGGATCAACAAGCTCCAATTGATGAAGAAGAGGTCCTTGAGATCTCAAGGGACCAAATGCCCAGGAGGGGCAGAAACGAAGGTGATGGCAGTGCAGCTGAAGGGAGAACTAAGAAAAGAAAAAGAGTAGAGAGTTCCCTGAGGAGGCCTAGCACTAGGGGAACGACTTCTGTGTTTTCCCAAGCAAAGACACCACCATCACCGCCACCAGTGAAGAGAGAACAATCTGTTCCTCGGTCGAAGAAGACTTCAACAAAGGAGCCGAGGATGGAAATGCAAGTGGAAGCTCACCCAGACGCTCAGACCCGACTAGCTATCATGAAAAGGTGGGTTATGATGTGTGAAAAATCATTCTCCATGAAGACAGGTCCTCTCCCAACATTCATCGAGGATATTTTACGTAGGTATGGCTGTGAGCAGCTATGCAAGGAGCCAAAGGCTGCATCTATCCCATTGGTTCGAGAATTCTATGCGCAGAGAGGGGAAGAGATGCAGACGACCATGCTCATACGTGATCGGATGGTGGACTTTTCAGCAAGGACTCTACTGTCAAGAGATTTGAAGCCAGAAGCAGCTGTCTGGCTGTACGTGATCAAGAATAGGATAATGCCAACAACACATGACACCACCATATCTCAAGAACGTGTCATCTTAATCAAGAAGCTCATAGCCAATTCCAAGCAGAAGGTGACTTCACCTGAAAAGAAGGCTAAAGTAGCCTCTCCTACAACTCAACACTCAAAATCTCCTGAAGAAGCCACGACTGCAGTGCCCAGTCGGTTTCGGGGTCAAAACGACCGGTTAGGTGCGAAGAAGTCTCGTTCAAAAGGACCCGCGGATGACTCAGAACTGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCTCGCATTTCTGGGCAAATTCCAGCTTTTCCTCTTAGGCGATGCGACCGCAAAATCATCACATAAATTACCAGATGCGGCTGCAAGTCAACAACAACCTCTAGTCCCTAAACCACAACCTGAAAATGATTTGGTGGTTTTAAGGAGAGACTTGGAGAAGATGAGGAGCCAGTTTAAGGAGTACCTGACCTATGCTAAAGAGCAAGATGGAGTTGTCAGATGCATCTTGGAGAATGTGGTGGATGATCTTGATGACTACCTTCCACCATTCCCCGAAATAAACTAG

Protein sequence

MGPKLQQQEEQSRIVADALWFSKAMACQIRDEQLAEDRKRKKEAERETKRKKIEEEEQATLDFAAACLKDSVDTTEKEEEEFMPASEGYSREFAKKFAVANVVQTKQETESALDPEVHSKVQVPPPPKEDENVLEDLFEHQKEAMFEVLFEHGQEEDQQAPIDEEEVLEISRDQMPRRGRNEGDGSAAEGRTKKRKRVESSLRRPSTRGTTSVFSQAKTPPSPPPVKREQSVPRSKKTSTKEPRMEMQVEAHPDAQTRLAIMKRWVMMCEKSFSMKTGPLPTFIEDILRRYGCEQLCKEPKAASIPLVREFYAQRGEEMQTTMLIRDRMVDFSARTLLSRDLKPEAAVWLYVIKNRIMPTTHDTTISQERVILIKKLIANSKQKVTSPEKKAKVASPTTQHSKSPEEATTAVPSRFRGQNDRLGAKKSRSKGPADDSELPLFFQKCGRISFCLLAFLGKFQLFLLGDATAKSSHKLPDAAASQQQPLVPKPQPENDLVVLRRDLEKMRSQFKEYLTYAKEQDGVVRCILENVVDDLDDYLPPFPEIN
Homology
[Close]
BLAST of Spg035002 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-04
Identity = 40/164 (24.39%), Postives = 71/164 (43.29%), Query Frame = 0 

Query: 281 PTFIEDILRRYGCEQLCKEPKAASIPLVREFYAQRGEEMQTTMLIRDRMVDFSAR----- 340
           P FI  ++ ++G  Q C+ P    +PLVREFYA   +  Q T+ +++  V F+AR     
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 341 --------------------------------------------TLLSRDLKPEAAVWLY 393
                                                       T + ++LK  A +W +
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

[Close]
BLAST of Spg035002 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-04
Identity = 45/195 (23.08%), Postives = 76/195 (38.97%), Query Frame = 0 

Query: 237 KTSTKEPRMEMQVEAHPDAQTRLAIMKRWVMMCEKSF----SMKTGPLPTFIEDILRRYG 296
           +T   E R E  ++  P             +  EK F    S   G LP FI  ++ ++ 
Sbjct: 17  ETEAAETRYENNIQNRP-------------LNAEKGFVLDNSETMGQLP-FIAQVITQHN 76

Query: 297 CEQLCKEPKAASIPLVREFYAQRGEEMQTTMLIRDRMVDFS------------------- 356
            +Q C  P+   +PLVREFYA   + ++ T+ +R   V +S                   
Sbjct: 77  WKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSE 136

Query: 357 ------------------------------ARTLLSRDLKPEAAVWLYVIKNRIMPTTHD 379
                                         A T +   L P A VW + +K+ ++PTTH 
Sbjct: 137 FIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHG 196

[Close]
BLAST of Spg035002 vs. ExPASy TrEMBL
Match: W9QTD9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 40/164 (24.39%), Postives = 71/164 (43.29%), Query Frame = 0 

Query: 281 PTFIEDILRRYGCEQLCKEPKAASIPLVREFYAQRGEEMQTTMLIRDRMVDFSAR----- 340
           P FI  ++ ++G  Q C+ P    +PLVREFYA   +  Q T+ +++  V F+AR     
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 341 --------------------------------------------TLLSRDLKPEAAVWLY 393
                                                       T + ++LK  A +W +
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

[Close]
BLAST of Spg035002 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-04
Identity = 45/195 (23.08%), Postives = 76/195 (38.97%), Query Frame = 0 

Query: 237 KTSTKEPRMEMQVEAHPDAQTRLAIMKRWVMMCEKSF----SMKTGPLPTFIEDILRRYG 296
           +T   E R E  ++  P             +  EK F    S   G LP FI  ++ ++ 
Sbjct: 17  ETEAAETRYENNIQNRP-------------LNAEKGFVLDNSETMGQLP-FIAQVITQHN 76

Query: 297 CEQLCKEPKAASIPLVREFYAQRGEEMQTTMLIRDRMVDFS------------------- 356
            +Q C  P+   +PLVREFYA   + ++ T+ +R   V +S                   
Sbjct: 77  WKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSE 136

Query: 357 ------------------------------ARTLLSRDLKPEAAVWLYVIKNRIMPTTHD 379
                                         A T +   L P A VW + +K+ ++PTTH 
Sbjct: 137 FIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHG 196

The following BLAST results are available for this feature:
BLAST of Spg035002 vs. NCBI nr
Match NameE-valueIdentityDescription
EXB53755.12.7e-0424.39hypothetical protein L484_022412 [Morus notabilis][more]
PON35554.15.9e-0423.08hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
BLAST of Spg035002 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035002 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W9QTD91.3e-0424.39Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1[more]
A0A2P5AGA52.9e-0423.08Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of Spg035002 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..434
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..416
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..436
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035002.1Spg035002.1mRNA