Spg034674 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034674
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase II transcription factor B subunit 4
Location	scaffold7: 46185910 .. 46189489 (+)
RNA-Seq Expression	Spg034674
Synteny	Spg034674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGTACATACTAAGTATACTAAGTTTAGAACTGGGCGTCTTCTCTCTATTTGCCTGTTCTGAAATAGCCATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTCCAATCCCTCTCTCCTTCTATTACGAGCACTTAGGTGAAGTTTCGGAGTGGCAGAAACTTATTCGTTTTTGTGATCTTTTGATTATGTTGTTGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTAATCGATAAATTGTCTCTCCATCTGCTAAAAATTCTACCAAGTAGGTGTTTTAGATAGAAATGTAATGAACATTGGTATTTTTTCTGTTTTGGGCGTAGGTACTTGCTTTTTTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTATCTATATAATTCGTCTTCGTACTCTAATCGTGGGCTTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAAGACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGATTATTTTCTTGTTTGTGTTGATAGCTTCTTGTCGTCTACGTAAAAGTAAAACTCCATCGTGTTCTAGAATTAGAATGTGTCAATGGACCATTAAAATTGAGTAACAAAACATAACAGTTAGCACTAAACAATATCTATGGAGATGGGAGTAGCATTTGGAAGTTATCTTTCATCTGTACATTTGATCGATTTTTGTGGTAATGAGTAATGGCAGCAAAATACTGTGAAAGTTATAGCTGACACGATAGAATTTGTAGATTGCCACTCATTAAATTCGACTTGAGTAATCTAATGTTCACCAACATATTATTTTGCTCCAAATGCTTGACCTTGTGAGTAGATATCCAGAAAGTTTTCCGCTCTGGATCCCTCCATCCCCAACCTCGAGTAAGCACTTGTTTCTGTTCTGCATCACTTTATTGCCATTTTTCATATGATATTTGTGGTCTATATGTTTCCTTTCTTATGTTTGTTGCGTACATATACTATTTGTTCCACAGTGATTTCAATAATCTGCTTTGAATTTTTGGTGAAAATGTGACTAATCTATGTGCATGTATTTACTTTGAGTGTAGATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAGTAAGATTTTTCTGATCTTCTCTGTTGAATTTATTTTATTTATGTAATTTTCTTTAATATTGAAAAACAAACTGTAAAATCTTTCTTCTAGTAATAATTTTTCTCTTTCAGATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAACATTCAATGGTGAGTATTTCTTGTTGTCACTTGTGAGTGTTCTTATATGACTTCTTGAACTTATGTCAATTACCAATTATCTTATATTTAACAGGTTGATTATCAGTAAGTAGGGAAAAATGTAGTCCGTCCCTAAATATTTTATGGAAATGCTCAACATAACTTTCCTCTGTATTAATCTTGTTCTTTGTCTGGTCTTGATGCTAGAAAGTGGTGTAGGACTACATTTTTCTGTAGATTTCTTCCCCTATAATTTTTGGAAAATAATTCAATACATCCCATAAGTGCATTTGAATTTATATGCATCTACGAGACTACAACAAATTATATCAACCTACTAGCTTGGAGTTTAACTGAATATCTGGTTTCTACCGTCAGAATTGAAGTCCAATGTTTAAAAAATGTCCTTGTCCCATGGACGTAAAATTTGATGAATATTTGGCAACTTTTCTATTATTGATCTTGTCAAATGTGAAAACCGAAATTGTAGAAAATGAAGATGTATGCATAAAATAAGAAAAAAGAATATCATTAAAGAGCAAAGGTTCTACAAAAAGGACGGGAGATATGGAGTTTCTCTGAAGGGACAGATTCTAGGATGGAGGTCTATTAGAATAACCCCAGTCCAAGTTGTTAATGAAGTAGAGAAGTCACAAAACCCTTGTCTAAGTACTTCAAATAAAAGGTATTCTAACTGTACAAGCTTCAAAAGTTAGGAAAAAGGCCCTAAAAATGTATTTTCAAAATTGAAAATAGAAAAAATAGAGATGCACTGTCAAATTACTCTCTCCAACAAGATCTATCAAGCTCAAAAGATGAAGAACTTTTGAGATTTTTCAATTGTTAGGTTTCTCTTTGTTACGACCGCTTAACATAAAAATGACCAAAAGAATGACTAATATCTTGGTATGAAGTAATTTTACTTGTAATGTTCATGATTGTAATGATCATTTGGTCATAAGCAAAAAGTTCATAGTCAATGAAATTTGGAAAGAAATGCAAATCTCCTTTCTCGTTTGCATTTATGGGTTTGCTTTCAGCTTTCATGTGCACTAGTCATTCATTTGAAGTCTGAGATAGCTGTCTATTGCAGCTCCATGTTGCTTTAACTATAAACAACATTCAACAATTTCCTTGTGTATAAGTATCATATCATGTATGATTGGGTATTCCTGGTTCAGGTTCCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGTAAGCTATCTGTACATTGTTCTGTTAATGGGTCTTTTACTTTTTCCCCCAGAATCTTACCGTCATAAGTTGTATCCTCTATTCATTTGCTTGTGGTGATTTGATTTCTGATGCTGTATAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGTTGTTTCAATATCTCTCTGTAGGTTATATTTACCTGTGGCTTTCTATTGCTCCCTCCAAGTTCAAACTTCAAAGCATCTGTTTACTTTTCTCATCGTTTTAGGATTTTAAGTTACAGATTAGTTAAGTGAATGGATTTTTATTGAAAACTCTGCTTGATCGTGGTACAGGAGGTCTTCCCTATTTTTCATAATCTCTTGCTTTCGCTTATGTGATATTGTATTGTTCTTTCTCTGCAGACTGTTTATGCCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCGAAGTCTGTTGGAGTGGATTTTCGTGCATCGTAAGTTTGGCGTCTTGTGAATATACAATTATGTGATTTTGTGCTTAAAATTTTTCCAGCTTACTGTGGCCTTATACCATTTTACACCTCTCATACTAGCAATTTCCTTCTCTGTTGGTGTGGATTTTTGTATATTGTAAGTTTGGAGTTTTGTGAATATACAATTCTGCGGCTTTGTGCTTAAAATTTGGCCAGCTTACTGTGGCCTTATACTAATTTACACCTCTCATCATAATTTTATCTTTTTCTGTATCCAACAGAGGAGGGAATTGCTAGTACCTAATAAATTGGTAATTTGCAGGTGTTTTTGCCACAAAAAAACAATTGATATGGGCTATGTCTGTTCTGTTTGCCTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAA

mRNA sequence

ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTACTTGCTTTTTTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTATCTATATAATTCGTCTTCGTACTCTAATCGTGGGCTTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAAGACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTATATCCAGAAAGTTTTCCGCTCTGGATCCCTCCATCCCCAACCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAACATTCAATGGTTCCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGTTGTTTCAATATCTCTCTACTGTTTATGCCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCGAAGTCTGTTGGAGTGGATTTTCGTGCATCGTGTTTTTGCCACAAAAAAACAATTGATATGGGCTATGTCTGTTCTGTTTGCCTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAA

Coding sequence (CDS)

ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTACTTGCTTTTTTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTATCTATATAATTCGTCTTCGTACTCTAATCGTGGGCTTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAAGACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTATATCCAGAAAGTTTTCCGCTCTGGATCCCTCCATCCCCAACCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAACATTCAATGGTTCCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGTTGTTTCAATATCTCTCTACTGTTTATGCCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCGAAGTCTGTTGGAGTGGATTTTCGTGCATCGTGTTTTTGCCACAAAAAAACAATTGATATGGGCTATGTCTGTTCTGTTTGCCTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAA

Protein sequence

MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG

Homology

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BLAST of Spg034674 vs. NCBI nr
Match: KAE8651699.1 (hypothetical protein Csa_005902 [Cucumis sativus])

HSP 1 Score: 544.7 bits (1402), Expect = 4.7e-151
Identity = 267/273 (97.80%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF+IGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. NCBI nr
Match: XP_004152842.1 (general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus] >XP_011648981.1 general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus])

HSP 1 Score: 544.7 bits (1402), Expect = 4.7e-151
Identity = 267/273 (97.80%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF+IGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

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BLAST of Spg034674 vs. NCBI nr
Match: XP_008441918.2 (PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 [Cucumis melo])

HSP 1 Score: 539.3 bits (1388), Expect = 2.0e-149
Identity = 265/273 (97.07%), Postives = 268/273 (98.17%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF+IGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ SMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TV+ TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCH KTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHXKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. NCBI nr
Match: XP_038886688.1 (general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida] >XP_038886689.1 general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida])

HSP 1 Score: 538.9 bits (1387), Expect = 2.6e-149
Identity = 264/273 (96.70%), Postives = 267/273 (97.80%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPPKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN GLEDGRMPALCTRLL NLEEF+I DEQS+KEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLNNLEEFVISDEQSLKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. NCBI nr
Match: KAG6578972.1 (LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 538.5 bits (1386), Expect = 3.3e-149
Identity = 264/273 (96.70%), Postives = 268/273 (98.17%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 552 MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 611

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEFMIGDEQSIKEDP+GGTMSSL
Sbjct: 612 GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGTMSSL 671

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQ SMVPIDSC
Sbjct: 672 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 731

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRA
Sbjct: 732 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 791

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMG+VCSVCLSIFCKHHKKCSTCG
Sbjct: 792 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCG 824

[Close]

BLAST of Spg034674 vs. ExPASy Swiss-Prot
Match: Q8LF41 (General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thaliana OX=3702 GN=TFB4 PE=2 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 8.1e-114
Identity = 203/277 (73.29%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGR---MPALCTRLLKNLEEFMIGDEQSIKEDPKGGTM 120
            TGY+SC Y+Y+SS  SN G  +     MPA+   LLK LEEF+  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 -SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVP 180
            S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQ  MVP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T++ATDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCG
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCG 277

[Close]

BLAST of Spg034674 vs. ExPASy Swiss-Prot
Match: Q86IB5 (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum OX=44689 GN=gtf2h3 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.7e-48
Identity = 106/256 (41.41%), Postives = 153/256 (59.77%), Query Frame = 0


Query: 34  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSS----------YSNRGL-E 93
           F+KFL H + F+N+ L+LNQ N++ +I +      +++  S+             R L E
Sbjct: 92  FNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQLNE 151

Query: 94  DGRM-----PALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR 153
           +G +       +  ++L  L++     +  IK D +   +SS  S S+S+ALCYI ++ R
Sbjct: 152 NGELLPTPNKTIQGQILAKLQKL----DLEIKHD-QTDILSSSFSASMSIALCYINRIKR 211

Query: 154 SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSCYIGSHNSAFLQQASYIT 213
             +   +PRIL    SPD   QY+++MN IFS+Q   +P+DSC +   +S FLQQAS++T
Sbjct: 212 E-TPTIKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLT 271

Query: 214 GGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSV 273
            G+YLKPQ+ + L QYL T +  D  SR  L  P    VD+RASCFCHK+ +D+GYVCSV
Sbjct: 272 SGIYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSV 331

[Close]

BLAST of Spg034674 vs. ExPASy Swiss-Prot
Match: Q05B56 (General transcription factor IIH subunit 3 OS=Bos taurus OX=9913 GN=GTF2H3 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-43
Identity = 108/285 (37.89%), Postives = 158/285 (55.44%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY----------------NSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIK 130
             ++LY                 SS ++  G +DG+   L        EE     +   K
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMTK 125

Query: 131 EDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNAI 190
            D +G    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN I
Sbjct: 126 SDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQHSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTF 250
           F+AQ   + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  V+  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTC 273
           L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC
Sbjct: 246 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 286

[Close]

BLAST of Spg034674 vs. ExPASy Swiss-Prot
Match: Q13889 (General transcription factor IIH subunit 3 OS=Homo sapiens OX=9606 GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-43
Identity = 107/286 (37.41%), Postives = 161/286 (56.29%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++D NP +W   +L  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY---------------NSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSI-- 130
             ++LY               N   ++  G +DG+       LL +  E ++ + + +  
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKY-----ELLTSANEVIVEEIKDLMT 125

Query: 131 KEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNA 190
           K D KG    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN 
Sbjct: 126 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 185

Query: 191 IFSAQHSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRT 250
           IF+AQ   + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  V+  D   R+
Sbjct: 186 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 245

Query: 251 FLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTC 273
            L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC
Sbjct: 246 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 285

[Close]

BLAST of Spg034674 vs. ExPASy Swiss-Prot
Match: Q8VD76 (General transcription factor IIH subunit 3 OS=Mus musculus OX=10090 GN=Gtf2h3 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.5e-43
Identity = 107/285 (37.54%), Postives = 156/285 (54.74%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHIQ 65

Query: 71  SCKYLYNSSS----------------YSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIK 130
             + LY   +                 +  G +DG+   L        EE     +   K
Sbjct: 66  ESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEI---KDLMTK 125

Query: 131 EDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNAI 190
            D KG    +LL+GSL+ ALCYI +V ++   +   + RIL ++ + D   QY+  MN I
Sbjct: 126 SDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQHSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTF 250
           F+AQ   + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  V+  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTC 273
           L LP  + VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC
Sbjct: 246 LILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTC 286

[Close]

BLAST of Spg034674 vs. ExPASy TrEMBL
Match: A0A0A0LMM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=3 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 2.3e-151
Identity = 267/273 (97.80%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF+IGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. ExPASy TrEMBL
Match: A0A1S3B4H7 (LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103485913 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 9.5e-150
Identity = 265/273 (97.07%), Postives = 268/273 (98.17%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF+IGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ SMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TV+ TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCH KTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHXKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. ExPASy TrEMBL
Match: A0A6J1FJQ6 (RNA polymerase II transcription factor B subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111444867 PE=3 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.7e-149
Identity = 263/273 (96.34%), Postives = 268/273 (98.17%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEFMIGDEQSI+EDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMG+VCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. ExPASy TrEMBL
Match: A0A6J1JZK7 (RNA polymerase II transcription factor B subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111489720 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.3e-148
Identity = 262/273 (95.97%), Postives = 267/273 (97.80%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEFMIGDEQSIKEDP+ GTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPREGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCY+QKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYLQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMG+VCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. ExPASy TrEMBL
Match: A0A6J1CM09 (RNA polymerase II transcription factor B subunit 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012196 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.1e-148
Identity = 261/273 (95.60%), Postives = 267/273 (97.80%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVI
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILDLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSS+SNRGLEDGRMPALCTRLLKNLEEF+I DEQS+KEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCTRLLKNLEEFVIADEQSVKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQ SMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSR FLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRAFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Spg034674 vs. TAIR 10
Match: AT1G18340.1 (basal transcription factor complex subunit-related )

HSP 1 Score: 411.4 bits (1056), Expect = 5.7e-115
Identity = 203/277 (73.29%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRGLEDGR---MPALCTRLLKNLEEFMIGDEQSIKEDPKGGTM 120
            TGY+SC Y+Y+SS  SN G  +     MPA+   LLK LEEF+  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 -SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQHSMVP 180
            S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQ  MVP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T++ATDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCG
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCG 277

The following BLAST results are available for this feature:

BLAST of Spg034674 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651699.1	4.7e-151	97.80	hypothetical protein Csa_005902 [Cucumis sativus]	[more]
XP_004152842.1	4.7e-151	97.80	general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus] >...	[more]
XP_008441918.2	2.0e-149	97.07	PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit...	[more]
XP_038886688.1	2.6e-149	96.70	general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida]...	[more]
KAG6578972.1	3.3e-149	96.70	LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma s...	[more]

BLAST of Spg034674 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF41	8.1e-114	73.29	General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thal...	[more]
Q86IB5	7.7e-48	41.41	General transcription factor IIH subunit 3 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q05B56	2.0e-43	37.89	General transcription factor IIH subunit 3 OS=Bos taurus OX=9913 GN=GTF2H3 PE=2 ...	[more]
Q13889	2.0e-43	37.41	General transcription factor IIH subunit 3 OS=Homo sapiens OX=9606 GN=GTF2H3 PE=...	[more]
Q8VD76	7.5e-43	37.54	General transcription factor IIH subunit 3 OS=Mus musculus OX=10090 GN=Gtf2h3 PE...	[more]

BLAST of Spg034674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMM2	2.3e-151	97.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=3 SV=1	[more]
A0A1S3B4H7	9.5e-150	97.07	LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucum...	[more]
A0A6J1FJQ6	4.7e-149	96.34	RNA polymerase II transcription factor B subunit 4 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JZK7	2.3e-148	95.97	RNA polymerase II transcription factor B subunit 4 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1CM09	3.1e-148	95.60	RNA polymerase II transcription factor B subunit 4 isoform X1 OS=Momordica chara...	[more]

BLAST of Spg034674 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18340.1	5.7e-115	73.29	basal transcription factor complex subunit-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 10..221 e-value: 4.4E-62 score: 211.6
IPR004600	TFIIH subunit Tfb4/GTF2H3	PFAM	PF03850	Tfb4	coord: 13..273 e-value: 4.2E-91 score: 305.3
IPR004600	TFIIH subunit Tfb4/GTF2H3	PANTHER	PTHR12831	TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED	coord: 1..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034674.1	Spg034674.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0046872	metal ion binding