Spg034667 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034667
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 44630635 .. 44631937 (-)
RNA-Seq Expression	Spg034667
Synteny	Spg034667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAACTCGCAAAACCTCTCCATTGCCGGTTACGCAGACGATGCATCTCCCTCATCGCCGGAGGTGGAAGGTCCTCACCATGACACCATTTCCTCCTCTGACGAGGAAAAGGATAACCAAGCTCAAGGTGACCTCATGGAAATAGAAAGACCCGAGGTCATCGATGTTGAGCAAACCACTGAACCGTCCACCTCCACAACCAAACCCACGGAGGTGCTCGACATTGTGCCGTTGGACACCCACACCTTCACCATCCAACCCGTAACCCTCCAACCTGCCCAAAACACCTTCGCCCCACGAAACCTAACTCCATTTCCATCCACTTTCCCTTCTGTCCTCCTTCTTCCACCTCCCGACTCTTCAGCTACCCTCGCATCAAACACCACCCCTTCATCTTCCTCCACCCCCGCAACGAATCTCTCCAGCCATCCAACTCCACGCAACCCACTTCACCGCAGTTTTCTGAGCAGGAAGTGGCCGCATGGAACTCCCTGATGGGAGAGTTGGGCGCAGAAGGCGACGCAATTCTCTAGAGAGAAGAACAAGAAAAAGCTGCGGCAGAAGAAACTGCCCGCAAGGCCGCCGCAGAAGAAGAAGCGGCCAGAGAAAGAGAGCACGCCAGCAAGTTGGCGCAAGACCAAATTGCCGTAGAGGTTGCCGCAGCAAATCTAGCCATCATTGCGGCAGCTCTGGACTCAGAGTCCACAGATTCGGAGGATGAACTACCCCTGACCCATCGCCGCAACATCCAACCAACAGGGGTGACCATCCAAAAGCCATCCGAGAAACCTGCGCTAGGCTCGAGCAAGAAACGAAAAGGGGCGCCCACCGCATCCAAAGGTAAAGGCAAAGAAAAAGTGGGCGAGGACAAGGGCAAATTCCAAGAGGAAAGGGGGTTCAGTTGCACGCTACCACAAACAATGACGGATCAGATTTCCCAACGCAGATGGGAGACAGCTGCGAGAACTTCCCCGACTTCGCTCCTGCGTTAGTCCACGACTTCTACCGAGCGCAGTGGCAGGAAGAAATTAATGAAATAGTGATGCGTGGCCACACAGTAGCCTTCTCCTCTGCGTGCATCAACTCCGTGTACGAGCTGCCAGACATCCCTTACACAGAAGGGAATGCGCTACTGAACTGCCTGGACGATGACTTCCTGAACGTAGTGCTGCTTGTGGTAGCCAGACCTGGAGTCAAGTGGGACGGCCATGGAGCTGCAAGGACCCTGAAGTCGCAGCTATTGGACTTCGACATGCTGGATGCACTGGGTGAAGAACCGCATCATGCCTACAACGCATGA

mRNA sequence

ATGTCCAACTCGCAAAACCTCTCCATTGCCGGTTACGCAGACGATGCATCTCCCTCATCGCCGGAGGTGGAAGGTCCTCACCATGACACCATTTCCTCCTCTGACGAGGAAAAGGATAACCAAGCTCAAGGTGACCTCATGGAAATAGAAAGACCCGAGGTCATCGATGTTGAGCAAACCACTGAACCGTCCACCTCCACAACCAAACCCACGGAGAGAGAAGAACAAGAAAAAGCTGCGGCAGAAGAAACTGCCCGCAAGGCCGCCGCAGAAGAAGAAGCGGCCAGAGAAAGAGAGCACGCCAGCAAGTTGGCGCAAGACCAAATTGCCGTAGAGGTTGCCGCAGCAAATCTAGCCATCATTGCGGCAGCTCTGGACTCAGAGTCCACAGATTCGGAGGATGAACTACCCCTGACCCATCGCCGCAACATCCAACCAACAGGGGTGACCATCCAAAAGCCATCCGAGAAACCTGCGCTAGGCTCGAGCAAGAAACGAAAAGGGGCGCCCACCGCATCCAAAGATTTCCCAACGCAGATGGGAGACAGCTGCGAGAACTTCCCCGACTTCGCTCCTGCGTTAGTCCACGACTTCTACCGAGCGCAGTGGCAGGAAGAAATTAATGAAATAGTGATGCGTGGCCACACAGTAGCCTTCTCCTCTGCGTGCATCAACTCCGTGTACGAGCTGCCAGACATCCCTTACACAGAAGGGAATGCGCTACTGAACTGCCTGGACGATGACTTCCTGAACGTAGTGCTGCTTGTGGTAGCCAGACCTGGAGTCAAGTGGGACGGCCATGGAGCTGCAAGGACCCTGAAGTCGCAGCTATTGGACTTCGACATGCTGGATGCACTGGGTGAAGAACCGCATCATGCCTACAACGCATGA

Coding sequence (CDS)

ATGTCCAACTCGCAAAACCTCTCCATTGCCGGTTACGCAGACGATGCATCTCCCTCATCGCCGGAGGTGGAAGGTCCTCACCATGACACCATTTCCTCCTCTGACGAGGAAAAGGATAACCAAGCTCAAGGTGACCTCATGGAAATAGAAAGACCCGAGGTCATCGATGTTGAGCAAACCACTGAACCGTCCACCTCCACAACCAAACCCACGGAGAGAGAAGAACAAGAAAAAGCTGCGGCAGAAGAAACTGCCCGCAAGGCCGCCGCAGAAGAAGAAGCGGCCAGAGAAAGAGAGCACGCCAGCAAGTTGGCGCAAGACCAAATTGCCGTAGAGGTTGCCGCAGCAAATCTAGCCATCATTGCGGCAGCTCTGGACTCAGAGTCCACAGATTCGGAGGATGAACTACCCCTGACCCATCGCCGCAACATCCAACCAACAGGGGTGACCATCCAAAAGCCATCCGAGAAACCTGCGCTAGGCTCGAGCAAGAAACGAAAAGGGGCGCCCACCGCATCCAAAGATTTCCCAACGCAGATGGGAGACAGCTGCGAGAACTTCCCCGACTTCGCTCCTGCGTTAGTCCACGACTTCTACCGAGCGCAGTGGCAGGAAGAAATTAATGAAATAGTGATGCGTGGCCACACAGTAGCCTTCTCCTCTGCGTGCATCAACTCCGTGTACGAGCTGCCAGACATCCCTTACACAGAAGGGAATGCGCTACTGAACTGCCTGGACGATGACTTCCTGAACGTAGTGCTGCTTGTGGTAGCCAGACCTGGAGTCAAGTGGGACGGCCATGGAGCTGCAAGGACCCTGAAGTCGCAGCTATTGGACTTCGACATGCTGGATGCACTGGGTGAAGAACCGCATCATGCCTACAACGCATGA

Protein sequence

MSNSQNLSIAGYADDASPSSPEVEGPHHDTISSSDEEKDNQAQGDLMEIERPEVIDVEQTTEPSTSTTKPTEREEQEKAAAEETARKAAAEEEAAREREHASKLAQDQIAVEVAAANLAIIAAALDSESTDSEDELPLTHRRNIQPTGVTIQKPSEKPALGSSKKRKGAPTASKDFPTQMGDSCENFPDFAPALVHDFYRAQWQEEINEIVMRGHTVAFSSACINSVYELPDIPYTEGNALLNCLDDDFLNVVLLVVARPGVKWDGHGAARTLKSQLLDFDMLDALGEEPHHAYNA

Homology

[Close]

BLAST of Spg034667 vs. ExPASy TrEMBL
Match: A0A5J5SYF7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G128000v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-04
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 194 LVHDFYRAQWQEEINEIVMRGHTVAFSSACINSVYELPDIPYTEGNALLNCLDDDFLNVV 253
           LV +FY +   ++  E+++R   V  +S  IN ++ LPD+   E   ++N ++ DFL  V
Sbjct: 79  LVQEFYASLTMQDAIEVIVRKKKVPLTSKSINDLFNLPDVEEDEYYPMMNNINWDFLQQV 138

Query: 254 LLVVARPGVKW 265
           L VV  PG +W
Sbjct: 139 LDVVTNPGSQW 149

[Close]

BLAST of Spg034667 vs. ExPASy TrEMBL
Match: A0A5D2FHZ7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G093000v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-04
Identity = 26/81 (32.10%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 184 CENFPDFAPALVHDFYRAQWQEEINEIVMRGHTVAFSSACINSVYELPDIPYTEGNALLN 243
           C+N       L+ +FY +   ++ N+++ R   V F+S  IN ++ LPD    E   ++N
Sbjct: 67  CDNHSHPDDELLQEFYASLTTQDANKVINRKKKVPFTSMSINDLFNLPDAEEDEHYPMMN 126

Query: 244 CLDDDFLNVVLLVVARPGVKW 265
            ++ DFL  VL VV   G +W
Sbjct: 127 NINWDFLQQVLDVVTNSGSQW 147

The following BLAST results are available for this feature:

BLAST of Spg034667 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034667 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5SYF7	7.7e-04	35.21	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G128000v1 PE...	[more]
A0A5D2FHZ7	7.7e-04	32.10	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G093000v1 PE=...	[more]

BLAST of Spg034667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034667.1	Spg034667.1	mRNA