Spg034470 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034470
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationscaffold4: 13190742 .. 13196581 (+)
RNA-Seq ExpressionSpg034470
SyntenySpg034470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAATTTCGTAAGGGGGAGGTGATAGCGAGCATAGCTAGCTATTTTTCCCTAAATAATTAAGCTAGTCTTTTATATTTAATTGGCCAAAATTATGCATTTTTGTGTTCTATTTGTAGGAATGATGTTTCGGAGTTAAATCGGGAAATTGGAGCTAAATATGTGTTCGGGACATGAAAATTGGCTAAAGAACGAAAAAGATTCAAGTTAGAAGAAGCCAAAAGAGAGCCATCTGCAGACCAGCGTCGGGACGCTGCTCTTGGAGCGTCTCGACGCTGCCTTTCCTTTTCTGATTCAGGCGGCAAAAGGTCATAGTGTCGCGATGCTGTGACCATAGCGTCTCGACACTGATAGCGTCGCGACGCTATGACACTAGCGTCTCGACGCTATCAACAGATTTCCTATTTAATCTTCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTGCGGTGTCGGCGGATTCGAGTTTTCCTTTCTCTTTCCCTTTAACTCTTGTAGTTTTTATGGCTTTTCTTTCAATTAGTGTTTGTAGTTTAAAGACTATGAATTGCTAGTTGTTTGTCTTAGGGATTGATGTAGTTGTTTTAGGTTGTTGGATTGATTTGTGGTATGAATATGCATATATTTTACCTATGCAATTATGGTTAAATGCTTTCAATTACTTGATCACTAGTTGAATGATTTGAGTGTTGAATCTTGCTCGGGAGAGGGGATTTGGCCTAAGACTTACTTTATTTAATTGCATGACTAAAGTAGAAATTCTAAGTTTGTGACGGGATTTGGAATAACTTTAGAAGTTGCTTGAAGAACTAAACCCAAAGCCTTGCATGTTAATGAACTTAGATAGGGATATCAAGTTGGTTGCATGCATGAGAATCAATTATGCTCGGGAGAGATAGTTGTGATAAAAGGTTCCTAGACTTGGTAGAATAATTGCATGCTAAATTCATCCCATTAATTTATCCTCAATCTCAACAATGAAATCAATTCCCTAAGAGTCTTTCCATTTGAGTCTCCACCTTTATTTTATGCTTTTTGTCTTTAGATTTATCTTTTATCATTGAGTTTTGCTCCCTAAATAAAATTGGACAAAAGTATTCACGATACTTAATTTGCTAGAAAACCAATCCAGAGGACGACACTCGTTTTACACGAAAACACTATATTATTACTTGACCCGTACACTTGCGGTTAGCAATTTGCGCATCAAGTTTTTGAGGTAAGTTGTAAACCCGAGACTTTCCTTAGATAATTTTCTCTTGTCATCTATTGGTGGTTTCATTGTTGGACTAAGTTGTGGGGAATTATCAATTTAAAAAGAAAGGAAAGAAAGGAATTAAATAAGTGAAGAAAAGAAAAGTAAAGAAAATGAAAAGGAAAAGGGAAAAAGGAAAAAAGAAAAAGAAAAAGAAAAAAGAAAGAAAAAGAAAGCAAGTGGGAAAGGACAACAAATACCTTCCACCACCGCTTCACTCATTTTTAGCCCACTACCAGCCCATTTCTTATCATTTTTCATTCCAAAAGCTACAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGGGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAATTTAGTTCATTTTCTAACAAAATTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTGGCAAGAAGATTTCGTGAGCCAAAAATGACTTTAAGTAGGGTTAATTTCAGGAGTTAGAAAAAAAGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATGCTGGGAAAATCGGTTGGGAATCTCATTTTTATTTCTTCAGGTAAGTTGTAGAGTGTTCGTAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGTGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTTGAAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCGAGCATAAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAGGTACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATGGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTCTTAATGACGGACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTACATTAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCATGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTAACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGACGGGGTGTGACATGAAGGCCCTCTCGGCTAAAGTGTTCGAGGGTCATATAGAAAGTCTAGGACTACGAGACATGTATATAGTGTAATCTAGGGAAAGTGGGAGATGTGTAATGGGTGTAAAGAAGCCCTAGTTTATTGTATTTTGTATATTTACTTTCATGTAATGTACAACATACATGTACCATTTCCAAGCTTTGGATTATTTTGTATATATTTTCCCATTAACTTGAGTTTTAGTTCAAGTGGGAGTTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTACATTTGACCGAACATTAATAAAAGTGATGCATTATTCATGTTTGTATTATATCTTGTCTTATTAACCCTAATCCAATAAACTAAACATCCAAGGCTAATAGAATGAGGCTTGAACTAGTATGTAGGGACATACGGGGATCAATGTTCAAGTTTTAGCCTAAAGGGTCTGTAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATATGGCTCGCTTTGTATATTGATTCAAACGTAATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAAGACCGGACCGCGAAATAGTTCACCACTAACTGTAACACCGTTAGTTAGCTCGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGACCTTAATCCTGAGTGGATTATGGACTCGTGTTCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTATAAGATGGAATTCACTCCTTCCCGATATTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTGAGGACTAAGAGGTAGCCTAGGGGTAAAACGGTAATTTGACCTAGCTGGGGTAGGAACACACGTGAAGGGCTAACTTGCTGTTGATGGTTAATATCCGTGGACACATAAATATGTCTGCAGTGAGAAGAGTGCAGCTGTGGTTCTATAGTGGAGTGACCACAGTAAATGAACATTGATTAATTTGGTTAATGAGTTTAGCCAATTAATCTCACATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACCGGTAGCTCTATAAGGGTGTTGGGTTCCTAGAATGAGTAAAAATAAGATGTAAATTGACTCTAGACTGTGTGCAAGTATACACAATCCGCGGCAAGTAATAAGTATTATCAATCCAAGGCCTGAACTAGCTTCCACTTTATCTATTTTGTATAATTCTTTAATGGTTTCAAAGGTGGTAAAAATGATTGGTTTTTATAAGAATAATGCTGAAGCAAAAGAAATGATAGAACAGTAAATAAACAAATAGACAGACATATTAGAAACAGGCGCTGGTCAGGATTTAGTAATTGTTTTGAAATATGCTCTAGCAATACTATTGATCATGCAAAACGCTCGCAGTCTTATTAGCAGATTCCTCCCGGAACTCCGGATCTTTTGGAATGTGTTTCAACTCCAATGAAGTACTACCAATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCTAGTGTGATTAACCGCCACACACTCTCTAAATCATCCCTGAAACTAGAGAGAGGTATTCATACCGGCTAGCCAAGCGGGCACAAAATGTAGATGAGCACAACAATTAATCAAGATGCATTAATCAATATTTATTACTAGAAATTAAGCACGACAATCACATTGTTTCCTAACCAACGCCTAAGCTACTTAGTTCATAAGATGCATGGAAACGCACGTTACAATCTTAGTACGCATATCCATAATCACAAGATAATAAAAGAAAATATTAATCTCCTTGATCAGCTTGTAAGTGATGGTCTTCTTGAAGGTCTCCAATCTCTTTACTCTACTCGGCTCCCAAAAGTGGAAATGAGAGTGAACTCGTCCCCAAAAGTGGAATGAATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAAGCTTGAATTAG

mRNA sequence

ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGAGTTAGAAAAAAAGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATGCTGGGAAAATCGGTTGGGAATCTCATTTTTATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTAACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGACGGGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTGAGGACTAAGAGGTCTCCAATCTCTTTACTCTACTCGGCTCCCAAAAGTGGAAATGAGAGTGAACTCGTCCCCAAAAGTGGAATGAATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAAGCTTGAATTAG

Coding sequence (CDS)

ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGAGTTAGAAAAAAAGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATGCTGGGAAAATCGGTTGGGAATCTCATTTTTATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTAACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGACGGGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTGAGGACTAAGAGGTCTCCAATCTCTTTACTCTACTCGGCTCCCAAAAGTGGAAATGAGAGTGAACTCGTCCCCAAAAGTGGAATGAATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAAGCTTGAATTAG

Protein sequence

MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWFNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPGRVVSPGLEQWALPSLWHERDFCLLVGPQTGCSLEEHWYLRTKRSPISLLYSAPKSGNESELVPKSGMNLTWAAISFYRVEESLN
Homology
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BLAST of Spg034470 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 8.4e-30
Identity = 99/204 (48.53%), Postives = 117/204 (57.35%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQ 60
           MQSQPLQNLGA ++    LF LSY EGTK     ++       S  L   E   ++KSNQ
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILE---IHKSNQ 60

Query: 61  KLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAV 120
           KLY  LE +++ NLE++ S      G   GN + + +  +      PLSTLSVLRDN+ V
Sbjct: 61  KLYLVLEVRIS-NLENLKS------GMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVV 120

Query: 121 VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGST 167
             IELPVPD LPTSAESS S+SSTW                           FNV VGST
Sbjct: 121 --IELPVPDILPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGST 180

[Close]
BLAST of Spg034470 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-29
Identity = 96/199 (48.24%), Postives = 108/199 (54.27%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWE 60
           MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY +
Sbjct: 1   MQSQPLQNLGA---TGNLWTGFSSKLGGFLVFSDALSI---------LEVHKSNQKLYLD 60

Query: 61  LEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAVVEIEL 120
           +E   +   + +L           GN   + SG +      PLSTLSVLRDNDAVVEIEL
Sbjct: 61  IESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIEL 120

Query: 121 PVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRG 167
           PVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRG
Sbjct: 121 PVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRG 177

[Close]
BLAST of Spg034470 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-29
Identity = 96/199 (48.24%), Postives = 108/199 (54.27%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWE 60
           MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY +
Sbjct: 1   MQSQPLQNLGA---TGNLWTGFSSKLGGFLVFSDALSI---------LEVHKSNQKLYLD 60

Query: 61  LEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAVVEIEL 120
           +E   +   + +L           GN   + SG +      PLSTLSVLRDNDAVVEIEL
Sbjct: 61  IESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIEL 120

Query: 121 PVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRG 167
           PVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRG
Sbjct: 121 PVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRG 177

[Close]
BLAST of Spg034470 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-27
Identity = 93/187 (49.73%), Postives = 107/187 (57.22%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHS----GVYKSNQK 60
           MQS PL+NLGA ++    LFGLSY EGTK     ++   G    F  +     V KSNQK
Sbjct: 485 MQSLPLENLGATVNLWFVLFGLSYQEGTKSTGFSSK--PGRFLVFSDALSILKVPKSNQK 544

Query: 61  LYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAVV 120
           LY ++E                  GK  GN   + +G +      PLST SVL DNDAVV
Sbjct: 545 LYLDIE--------------SGKSGKPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVV 604

Query: 121 EIELPVPDTLPTSAESSRSSSSTW-----------FNVLVGSTGIVRGDDVCWLNAVFRA 167
           EIEL VPDTLPTSAES  S+SS +           FNV VGSTGIVRGDDVC L+ VFRA
Sbjct: 605 EIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVFNVSVGSTGIVRGDDVCCLHVVFRA 655

[Close]
BLAST of Spg034470 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 8.6e-27
Identity = 95/198 (47.98%), Postives = 106/198 (53.54%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQ 60
           MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   ++K NQ
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILE---IHKLNQ 60

Query: 61  KLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYIPLSTLSVLRDNDAVVEIELP 120
           KLY              L   G  L    G L    +    LSTLSVLRDN+AV  IELP
Sbjct: 61  KLY--------------LGPRGNRLSLQTGEL--DKTVIFSLSTLSVLRDNNAV--IELP 120

Query: 121 VPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGD 167
           VPDTLPTSAESS S+SSTW                           FNV VGSTGIVRGD
Sbjct: 121 VPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGD 177

[Close]
BLAST of Spg034470 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.0e-30
Identity = 99/204 (48.53%), Postives = 117/204 (57.35%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQ 60
           MQSQPLQNLGA ++    LF LSY EGTK     ++       S  L   E   ++KSNQ
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILE---IHKSNQ 60

Query: 61  KLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAV 120
           KLY  LE +++ NLE++ S      G   GN + + +  +      PLSTLSVLRDN+ V
Sbjct: 61  KLYLVLEVRIS-NLENLKS------GMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVV 120

Query: 121 VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGST 167
             IELPVPD LPTSAESS S+SSTW                           FNV VGST
Sbjct: 121 --IELPVPDILPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGST 180

[Close]
BLAST of Spg034470 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-30
Identity = 96/199 (48.24%), Postives = 108/199 (54.27%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWE 60
           MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY +
Sbjct: 1   MQSQPLQNLGA---TGNLWTGFSSKLGGFLVFSDALSI---------LEVHKSNQKLYLD 60

Query: 61  LEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAVVEIEL 120
           +E   +   + +L           GN   + SG +      PLSTLSVLRDNDAVVEIEL
Sbjct: 61  IESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIEL 120

Query: 121 PVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRG 167
           PVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRG
Sbjct: 121 PVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRG 177

[Close]
BLAST of Spg034470 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-30
Identity = 96/199 (48.24%), Postives = 108/199 (54.27%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWE 60
           MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY +
Sbjct: 1   MQSQPLQNLGA---TGNLWTGFSSKLGGFLVFSDALSI---------LEVHKSNQKLYLD 60

Query: 61  LEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAVVEIEL 120
           +E   +   + +L           GN   + SG +      PLSTLSVLRDNDAVVEIEL
Sbjct: 61  IESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIEL 120

Query: 121 PVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRG 167
           PVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRG
Sbjct: 121 PVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRG 177

[Close]
BLAST of Spg034470 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.4e-28
Identity = 93/187 (49.73%), Postives = 107/187 (57.22%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHS----GVYKSNQK 60
           MQS PL+NLGA ++    LFGLSY EGTK     ++   G    F  +     V KSNQK
Sbjct: 485 MQSLPLENLGATVNLWFVLFGLSYQEGTKSTGFSSK--PGRFLVFSDALSILKVPKSNQK 544

Query: 61  LYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI------PLSTLSVLRDNDAVV 120
           LY ++E                  GK  GN   + +G +      PLST SVL DNDAVV
Sbjct: 545 LYLDIE--------------SGKSGKPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVV 604

Query: 121 EIELPVPDTLPTSAESSRSSSSTW-----------FNVLVGSTGIVRGDDVCWLNAVFRA 167
           EIEL VPDTLPTSAES  S+SS +           FNV VGSTGIVRGDDVC L+ VFRA
Sbjct: 605 EIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVFNVSVGSTGIVRGDDVCCLHVVFRA 655

[Close]
BLAST of Spg034470 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.2e-27
Identity = 95/198 (47.98%), Postives = 106/198 (53.54%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQ 60
           MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   ++K NQ
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILE---IHKLNQ 60

Query: 61  KLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYIPLSTLSVLRDNDAVVEIELP 120
           KLY              L   G  L    G L    +    LSTLSVLRDN+AV  IELP
Sbjct: 61  KLY--------------LGPRGNRLSLQTGEL--DKTVIFSLSTLSVLRDNNAV--IELP 120

Query: 121 VPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGD 167
           VPDTLPTSAESS S+SSTW                           FNV VGSTGIVRGD
Sbjct: 121 VPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGD 177

The following BLAST results are available for this feature:
BLAST of Spg034470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058280.18.4e-3048.53uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
KAA0062409.11.4e-2948.24reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.11.4e-2948.24putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064296.11.7e-2749.73putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
TYK11835.18.6e-2747.98uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg034470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UT174.0e-3048.53CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7V9N36.9e-3048.24Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY76.9e-3048.24Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VD338.4e-2849.73Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3CJX34.2e-2747.98CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Spg034470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034470.1Spg034470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016779 nucleotidyltransferase activity