Spg034466 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034466
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationscaffold4: 11812313 .. 11816444 (-)
RNA-Seq ExpressionSpg034466
SyntenySpg034466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGCGAGATCCCTTTGTTCACGTCTCGAAGTCAGTACTTAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTAGGAGTAAATTCCATTTTGCAAGACTATGTCCCCAGCTATCTACCCGTTCCTATTCCTGAAATGGGGGGTTTATTGAGTCGGCGATGTGGAGCCACTCTCACCCATGCAGATCTAAGGATAAGCCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCATTTGAAATAGTCAGTCTTGACAGTAAACGGCGTTATAAAGCAAGAGTGACTTATTTCTCGGTCCTGGTCTTATGCAAACTCATTTGCATAGGACGCCCCCACTCGCATGTCTAAACATGAACAATCCAGGATCACGTCGTTTGTACTCAAATAAAGTGGGTCGCATCTCATGGTTTTCCTAGGATTAAGGTACCTAGCCTTATCCCTATACTATAGACTGTTTAGGCTATTACTTGAACTTGATCGATTTTTATGTAATACATAAAGTTCAAGTTTTCATAATATAGCCAAGGATTCTAGTTTATTGGATTTGGGTTATTTAATGTACATTTCACTCATTTAATAACTTGAGTGAACAAAAACTCCATAACGACTTTATCGAACAAGTATATAACTATTTGTTTCATTCACTATCTACGAGTTTTAGGGCACCAACCCCAACACAAACGACCGATCTGATCGATGTTAATATGACCAAGACGTAAATGCCAAAGGTATGTATTGTTACTTTTTGGAGAAATCCTTTGCATTTTATTTTGAGTTTCAACAGTTTTAAACATTTCATGATTTAAAAGTGCTTTTGTGTCGGTTGGTCTTAACACATATAAGTTATTTTCTAACTTTGGTGAACAAATAAGTACACCATTTCTGTAAATATACGCTTCATTTGATAGAAAATTAACAGTGTACGATTGTTCCAACAAACACAAAATAGAAATTAAGTTCTTCTTGATCTTGGGAACTATATACAAATTCTCTAAAAGAAGAAATCTATTTCTGAAAAATAACTTTGCAACTCCCACTGCACTTGCTGAAATGACATCTCCTGTTCCAACCTTGAGTGTCATCTCACCTTCTTCAAGCTATTGAAAATTATTTCCCTGAAAAAAAGAACAAACATGATTAGTTTCTCCTGAATCTAATATCCAGGCATACTCATGATGCTCTACAAGGCATGTTTCTAAAACAAGTAAATCAAATTTACCTTTCTTTTCTTTCTTCTTCTCTGCAAGGTATTTGGGGCTATTTCTTTTACAATGCCCATCCACATTGCAATGGAAGCATTTGTCCTTGTCGGCCACCACCTTGGCCTTCCCCTTGCCTTGAACAGCTTTAGTATGAGCCTTTCCCTTGTCACCCTTCTTTTGTATCTTCTTCAAAGAAGAAGCTTGAGGTACACGTTTAGTTCCTGAGGATGAACCCTTTTGGAACTTTCTTTTGGAATGGGCCCCATTGGCCTCCCCTTTAGCAATACCTTTGCCCTTGCTCTTAAGCATGGCCTCTTATACCTATAGCCCATTCAGAAGGATGGTCAGGTTGAATTGAATCTTATTCATGCTTGCGTTTGTTCGAAATTGCATGAAGCTCTATGGAAGAGACAACATTATAAACGCAACCTGACTTCTCTCGCACACGACCCCGCCGTTTGCCTCTGCAATATTGAATTGGTTCAACATGTTGAGAACATGTTCCCGAACAGACTGACCCTCTTCCATGCGGGCATTAAAGACGTTTTTCAGAGCCTCGTGGTGGAGCTGGTAGGATGGCAATCCAAACATCTCCTGGAGGGAATTCATAATCTCCCTCGTTGTTTCCATGTTCTCATACCTCTTGGCCAATACTTCAGTTAAGCTGGCCAAGATATAGACACGGGCCTTTTCGTTGGCCTTTGTCCATCGGTCGTATGCATCCTTTATCGCTTGGGATGCATTGCGAGGAGAGATTGGAGGACACTCCTCCGTTAAGACAAACCGAAGATCTTCTACAACTAAAATCGTATTGAGGTTGGATTTCCACGTAGGAAAGTTCTCGCAGGTAAGTTTTTTGTTTTTCATAGAGCGATAATCGAGGAAGACATTGCTGAAAAAACAAACATTTACCGTATTAGTTATCTTTGCCTTAACTCATCTCACAAGCAATACAAAAGATTGCACAAATCCAATTAATTTAGCAAACAATCAATCAAAGAACCTGAACAAACTTTTAATTGTGTTTAGCAACGATGCTTTAGAGGCATAGAGAAACAGCCACCGAAGAGTGGTCAGCAACTCCTCCTTCAAAATGAGACACTTCTGAGTCAACTCTAATTCCAGAATAACTCATATTCCTATAGACGTTAACCACCGTTGTTCCGTGCAGGACTTGTTAACAATTTAACTTATCCCCGTAAGTGTTACCCTCCCACTTTTAGATCTCAGAGGCACGCACCAACAGGCTACCGTTAGGAAAGACAACTATTGGTAATTAGCCTAAGTGACCCTATCCTTTTCAGGAGTTCACGGTGTTTCGAATCCTATGATCAGAACCTCCGAAGGGATGGTTGCTCTAGGACAACATGCAGACAGATCATAGGAATCTCACGTTGTGACCTAGGGGTGGAGATCGAAGGATACGTTGACACGTGTCCCGCTCCCACTTACTATGGACACTTTCCCCATTCACCTTGTTATTGACCCATGCAAACACTTTTCCAAAAGGAGGCCGTACTTAAAGCGACACGAAGCTGAGCATGGATCTCACATTGTGAATATAAGGACGTAGGAGCAAAACTCGATTTAATTCAAGTCTTGTAATTTTCCTCCCACTAAAGTGACCTACCATTCATTTTAGGGGTTATTAACTTAAATAAATCCATCTAAGTCAATCTATCTAAGTCTAATCCTATTATAATTATTATAATAAGATCTTCCATCTAGGATCTAGGTGAATTAAACACATTTAATTAACCTAGTGACCATTATCCAACATTAAACTATGATTAATTCAACTTCGGTGATCCAAGTCAGTTCCCAGGTAGGAGGTGTTCTGTAAACCGTCAACTTAAATACCCCCAACCTTAGACAAAACATCACTGGTAGAGTTCCCTTATAATCATAGTTATGTTGGTCCTACTTAGTTGATTTAAACCATTTTTAACTAAGGAAAAATTCTGATCCGATTAGAATATGACCTTAGGTCTAATTAATTTTAACTCATAAAATTAATTAATATAACCTATGGTTCTATGTGTGCATGCATCTCTTGATTATAGATTGACTGTTTCTAATCATTAATTTTAAACTATTCAAAATTTTAATGATTAGTCCTATAATCATGCATACTATAGTTTAATTCAATTAACAATCATATTCTAATTAATAATCAAACTATACTATTGGCATTGCATGAATTTTAATATAACAATTATATTAAGACTATGGATGTTTCATGCTCAATGTAACTTTGATTTCCTTATTAATAAATATAACATTTATATTATTGCCAATCAAGGTAAATCATAGTAGCATGTTGCAAACAACTTATTAAATATAACTCTTTATATTTAACTAAGTAATTTCATGCATCATGTTTTTCCATTTTCATGAATTTAATATAACTCACATACATTAAATATCTCATGAAAATGATACATGCGTTTTCATCCATACATTATAACTAATTATAATATATAAAAAATGCATGAGCATGCTTTATAACCTAAGGTGGGATTTCTAATATGACATCCATAAAGCATATTAAATAGCGTATAAACCGATTAATTGGCCGCTAGGATAAAATAAAGCATATAAATTATATTAATTCAAGCTATTGTTTCCTAATCTATCCTTCTGCAGCTTCAGAACCGGCCCAGACCTCACGAACCGTTGCGAACCGATCACCAAAAAGTCGAACCAAGCCAAAACTGGGCTGGACCGGGCCAAACCGACCCCAGACCAGCCCAGATCGTTGAATCGAACTGCAAGACTTGTTGAACTGCGCACGTCTGAAGCCCTAACCGCGCGCCGCACGAACTCGCGACAGCGTCCCGACGTTGTTACGCCTGGAACGAAATTCTGGGCGAAAACAGCATTGTTCTTCGACTTTTAG

mRNA sequence

ATGAGAGGGCGAGATCCCTTTGTTCACGTCTCGAAGTCAGTACTTAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTAGGAGTAAATTCCATTTTGCAAGACTATGTCCCCAGCTATCTACCCGTTCCTATTCCTGAAATGGGGGGTTTATTGAGTCGGCGATGTGGAGCCACTCTCACCCATGCAGATCTAAGGATAAGCCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGATCTCAGAGGCACGCACCAACAGGCTACCGTTAGGAAAGACAACTATTGCTTCAGAACCGGCCCAGACCTCACGAACCGTTGCGAACCGATCACCAAAAAGTCGAACCAAGCCAAAACTGGGCTGGACCGGGCCAAACCGACCCCAGACCAGCCCAGATCGTTGAATCGAACTGCAAGACTTGTTGAACTGCGCACGTCTGAAGCCCTAACCGCGCGCCGCACGAACTCGCGACAGCGTCCCGACGTTGTTACGCCTGGAACGAAATTCTGGGCGAAAACAGCATTGTTCTTCGACTTTTAG

Coding sequence (CDS)

ATGAGAGGGCGAGATCCCTTTGTTCACGTCTCGAAGTCAGTACTTAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTAGGAGTAAATTCCATTTTGCAAGACTATGTCCCCAGCTATCTACCCGTTCCTATTCCTGAAATGGGGGGTTTATTGAGTCGGCGATGTGGAGCCACTCTCACCCATGCAGATCTAAGGATAAGCCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGATCTCAGAGGCACGCACCAACAGGCTACCGTTAGGAAAGACAACTATTGCTTCAGAACCGGCCCAGACCTCACGAACCGTTGCGAACCGATCACCAAAAAGTCGAACCAAGCCAAAACTGGGCTGGACCGGGCCAAACCGACCCCAGACCAGCCCAGATCGTTGAATCGAACTGCAAGACTTGTTGAACTGCGCACGTCTGAAGCCCTAACCGCGCGCCGCACGAACTCGCGACAGCGTCCCGACGTTGTTACGCCTGGAACGAAATTCTGGGCGAAAACAGCATTGTTCTTCGACTTTTAG

Protein sequence

MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYLDLRGTHQQATVRKDNYCFRTGPDLTNRCEPITKKSNQAKTGLDRAKPTPDQPRSLNRTARLVELRTSEALTARRTNSRQRPDVVTPGTKFWAKTALFFDF
Homology
[Close]
BLAST of Spg034466 vs. NCBI nr
Match: KAA0047869.1 (hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 6   PFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADL 65
           P V    SVLKGTT LLS  WVGVNS+L     +   V  P+    L +R     T+ DL
Sbjct: 59  PLVQDLDSVLKGTTYLLSQKWVGVNSVLHPMSLAIHSVLSPKWEA-LGQRQKVARTYEDL 118

Query: 66  RISPNKQEFIVSSGLRSSYL 86
           RI  N+Q+FIVSSGLRSSYL
Sbjct: 119 RILSNEQKFIVSSGLRSSYL 137

[Close]
BLAST of Spg034466 vs. NCBI nr
Match: KAA0054446.1 (hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa] >TYK14593.1 hypothetical protein E5676_scaffold552G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-08
Identity = 42/85 (49.41%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 1  MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATL 60
          MRG  P+V    SVLKGTT LL+L WVGVNSIL    P+       +             
Sbjct: 1  MRGWGPYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPF 60

Query: 61 THADLRISPNKQEFIVSSGLRSSYL 86
          T+ADLRI   +QEF VSSGLR SYL
Sbjct: 61 TYADLRIISCEQEFTVSSGLRLSYL 85

[Close]
BLAST of Spg034466 vs. NCBI nr
Match: TYK16320.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-07
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 36  YVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL 86
           YVPSY     PEMGGLL +R  A LT+ADLRI  N+Q+FIVS GLRSSYL
Sbjct: 819 YVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYL 868

[Close]
BLAST of Spg034466 vs. NCBI nr
Match: KAA0035081.1 (hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa] >TYK03598.1 hypothetical protein E5676_scaffold1369G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-05
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 13  SVLKGTTSLLSLNWVGVNSILQDY-VPSYLPVPIP-EMGGLLSRRCGATLTHADLRISPN 72
           SVLKGTT LL+L  VGV+SIL    +  YL +P+  E     S  C   LT+ DLR+ P 
Sbjct: 45  SVLKGTTYLLTLKRVGVSSILHPMSLAIYLVLPLKWEAYWPTSLSC---LTYVDLRVIPF 104

Query: 73  KQEFIVSSGLRSSYL 86
           +Q+FIVSSGLR SYL
Sbjct: 105 EQKFIVSSGLRLSYL 116

[Close]
BLAST of Spg034466 vs. ExPASy TrEMBL
Match: A0A5A7U348 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001380 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 6   PFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADL 65
           P V    SVLKGTT LLS  WVGVNS+L     +   V  P+    L +R     T+ DL
Sbjct: 59  PLVQDLDSVLKGTTYLLSQKWVGVNSVLHPMSLAIHSVLSPKWEA-LGQRQKVARTYEDL 118

Query: 66  RISPNKQEFIVSSGLRSSYL 86
           RI  N+Q+FIVSSGLRSSYL
Sbjct: 119 RILSNEQKFIVSSGLRSSYL 137

[Close]
BLAST of Spg034466 vs. ExPASy TrEMBL
Match: A0A5D3CRT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00950 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 42/85 (49.41%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 1  MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATL 60
          MRG  P+V    SVLKGTT LL+L WVGVNSIL    P+       +             
Sbjct: 1  MRGWGPYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPF 60

Query: 61 THADLRISPNKQEFIVSSGLRSSYL 86
          T+ADLRI   +QEF VSSGLR SYL
Sbjct: 61 TYADLRIISCEQEFTVSSGLRLSYL 85

[Close]
BLAST of Spg034466 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 36  YVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL 86
           YVPSY     PEMGGLL +R  A LT+ADLRI  N+Q+FIVS GLRSSYL
Sbjct: 819 YVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYL 868

[Close]
BLAST of Spg034466 vs. ExPASy TrEMBL
Match: A0A5D3BX92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00120 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 13  SVLKGTTSLLSLNWVGVNSILQDY-VPSYLPVPIP-EMGGLLSRRCGATLTHADLRISPN 72
           SVLKGTT LL+L  VGV+SIL    +  YL +P+  E     S  C   LT+ DLR+ P 
Sbjct: 45  SVLKGTTYLLTLKRVGVSSILHPMSLAIYLVLPLKWEAYWPTSLSC---LTYVDLRVIPF 104

Query: 73  KQEFIVSSGLRSSYL 86
           +Q+FIVSSGLR SYL
Sbjct: 105 EQKFIVSSGLRLSYL 116

The following BLAST results are available for this feature:
BLAST of Spg034466 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047869.12.3e-0852.50hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa][more]
KAA0054446.13.9e-0849.41hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa] >TYK1459... [more]
TYK16320.19.6e-0768.00retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0035081.14.0e-0553.33hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa] >TYK0359... [more]
BLAST of Spg034466 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U3481.1e-0852.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CRT61.9e-0849.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CY864.6e-0768.00Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
A0A5D3BX922.0e-0553.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg034466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034466.1Spg034466.1mRNA