Spg034292 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034292
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA replication complex GINS protein PSF2
Location	scaffold2: 49993085 .. 49993627 (-)
RNA-Seq Expression	Spg034292
Synteny	Spg034292

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCATGTCCAAGTTGAGTTTGTGGTCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGAACCTCTGAATTTGATTTGTGTATGCCTTCTTCTTCACCTTTTTTCTTCATGTTTAACATGTGTGTTGTCCGCTTTATTGCAAGGATGCTTCAATTTTTTGTTGTTGGGTGTTCTTGGTCTCTTCTTCCTACTAACATGCTGAGTGTTCTTATTGTTATTTCCAATAGGGGAATTATGGTACGTTCTATCCTCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTACTCTGAAAAAAAGAGGAAAATGTGCAATTAGGCCTCTAGAGTGGATGTCAGTAGGTAAGTTCTATTGTGGCTACAAGTCCTTATGTATATATTTAGGCAATATTTGGTCTTTGAATTACCTAGGTTAGTGATTCATGTATGATTGAGAACAAAAACAAACTTATATTTTATTGATTTATTTTAAGAACTAGAGATGAAGAAGAAGAACCAGGGCTTGTCGAAGATGGCAAAAGGTGACATAACATAA

mRNA sequence

ATCCATGTCCAAGTTGAGTTTGTGGTCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGAACCTCTGAATTTGATTTGTGGGAATTATGGTACGTTCTATCCTCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTACTCTGAAAAAAAGAGGAAAATGTGCAATTAGGCCTCTAGAGTGGATGTCAGTAGGTAAGTTCTATTGTGGCTACAAGTCCTTATAA

Coding sequence (CDS)

ATCCATGTCCAAGTTGAGTTTGTGGTCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGAACCTCTGAATTTGATTTGTGGGAATTATGGTACGTTCTATCCTCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTACTCTGAAAAAAAGAGGAAAATGTGCAATTAGGCCTCTAGAGTGGATGTCAGTAGGTAAGTTCTATTGTGGCTACAAGTCCTTATAA

Protein sequence

IHVQVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGKFYCGYKSL

Homology

[Close]

BLAST of Spg034292 vs. NCBI nr
Match: XP_022925113.1 (DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. NCBI nr
Match: XP_023517318.1 (DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. NCBI nr
Match: XP_023517317.1 (DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7027507.1 DNA replication complex GINS protein PSF2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. NCBI nr
Match: XP_022925112.1 (DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. NCBI nr
Match: XP_022966457.1 (DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. ExPASy Swiss-Prot
Match: Q9C7A8 (DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana OX=3702 GN=GINS2 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          +VEF+ EDE+VEIVPNM ME LN I G++G F PQI T+VPLWLA+ LK+RGKC  RP  
Sbjct: 16 EVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPG 75

Query: 64 WMSV 68
          WMSV
Sbjct: 76 WMSV 79

[Close]

BLAST of Spg034292 vs. ExPASy Swiss-Prot
Match: Q54BL9 (Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum OX=44689 GN=gins2 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-14
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          Q+EF+ ED  + +VPN +ME L  + G YG F P    E+PLWLAI+LKK+ KC I P +
Sbjct: 10 QIEFLAEDTTITVVPNFKMESLIFLSGEYGPFVPSFPIEIPLWLAISLKKKKKCTITPPD 69

Query: 64 WMSVGK 70
          WM+  K
Sbjct: 70 WMTYNK 75

[Close]

BLAST of Spg034292 vs. ExPASy Swiss-Prot
Match: Q9Y248 (DNA replication complex GINS protein PSF2 OS=Homo sapiens OX=9606 GN=GINS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          +VEF+ E E+V I+PN  ++ + LI G+ G F P +  EVPLWLAI LK+R KC + P E
Sbjct: 5  EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 64

Query: 64 WMSVGK 70
          WM V K
Sbjct: 65 WMDVEK 70

[Close]

BLAST of Spg034292 vs. ExPASy Swiss-Prot
Match: Q7ZT46 (DNA replication complex GINS protein PSF2 OS=Xenopus laevis OX=8355 GN=gins2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-13
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          +VEF+ E E V ++PN  ++ + LI G+ G F P +  EVPLWLAI LK+R KC I P E
Sbjct: 5  EVEFLAEKEQVTVIPNFSLDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCRIVPPE 64

Query: 64 WMSVGK 70
          WM V K
Sbjct: 65 WMDVEK 70

[Close]

BLAST of Spg034292 vs. ExPASy Swiss-Prot
Match: Q9D600 (DNA replication complex GINS protein PSF2 OS=Mus musculus OX=10090 GN=Gins2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-13
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          +VEF+ E E+V I+PN  ++ + LI G+ G F P +  +VPLWLAI LK+R KC + P E
Sbjct: 5  EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLPPE 64

Query: 64 WMSVGK 70
          WM V K
Sbjct: 65 WMDVEK 70

[Close]

BLAST of Spg034292 vs. ExPASy TrEMBL
Match: A0A0A0KVY8 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G114190 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 4   QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
           +VEFV EDEMVEI+PNMRM+ L+LICG+YG FYPQIATEVPLWLAI LKKRGKCAIR  E
Sbjct: 86  EVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPE 145

Query: 64  WMSVGKF 71
           WMSVGKF
Sbjct: 146 WMSVGKF 152

[Close]

BLAST of Spg034292 vs. ExPASy TrEMBL
Match: A0A6J1HN13 (DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC111466105 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. ExPASy TrEMBL
Match: A0A6J1HPD8 (DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC111466105 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. ExPASy TrEMBL
Match: A0A6J1EEB6 (DNA replication complex GINS protein PSF2 OS=Cucurbita moschata OX=3662 GN=LOC111432452 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. ExPASy TrEMBL
Match: A0A6J1EAX5 (DNA replication complex GINS protein PSF2 OS=Cucurbita moschata OX=3662 GN=LOC111432452 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP E
Sbjct: 16 EIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPE 75

Query: 64 WMSVGK 70
          WMSV K
Sbjct: 76 WMSVEK 81

[Close]

BLAST of Spg034292 vs. TAIR 10
Match: AT3G12530.1 (PSF2 )

HSP 1 Score: 96.7 bits (239), Expect = 8.8e-21
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 4  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLE 63
          +VEF+ EDE+VEIVPNM ME LN I G++G F PQI T+VPLWLA+ LK+RGKC  RP  
Sbjct: 16 EVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPG 75

Query: 64 WMSV 68
          WMSV
Sbjct: 76 WMSV 79

[Close]

BLAST of Spg034292 vs. TAIR 10
Match: AT3G12530.2 (PSF2 )

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-19
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 8  VVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV 67
          + EDE+VEIVPNM ME LN I G++G F PQI T+VPLWLA+ LK+RGKC  RP  WMSV
Sbjct: 1  MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

The following BLAST results are available for this feature:

BLAST of Spg034292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925113.1	2.8e-24	84.85	DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata]	[more]
XP_023517318.1	2.8e-24	84.85	DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_023517317.1	2.8e-24	84.85	DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita pepo subsp. pepo...	[more]
XP_022925112.1	2.8e-24	84.85	DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita moschata]	[more]
XP_022966457.1	2.8e-24	84.85	DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita maxima]	[more]

BLAST of Spg034292 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7A8	1.2e-19	67.19	DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana OX=3702 GN=GIN...	[more]
Q54BL9	1.6e-14	50.00	Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum O...	[more]
Q9Y248	3.9e-13	51.52	DNA replication complex GINS protein PSF2 OS=Homo sapiens OX=9606 GN=GINS2 PE=1 ...	[more]
Q7ZT46	5.1e-13	51.52	DNA replication complex GINS protein PSF2 OS=Xenopus laevis OX=8355 GN=gins2 PE=...	[more]
Q9D600	8.6e-13	50.00	DNA replication complex GINS protein PSF2 OS=Mus musculus OX=10090 GN=Gins2 PE=1...	[more]

BLAST of Spg034292 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVY8	1.0e-24	83.58	Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G114190 PE=4 S...	[more]
A0A6J1HN13	1.3e-24	84.85	DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HPD8	1.3e-24	84.85	DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1EEB6	1.3e-24	84.85	DNA replication complex GINS protein PSF2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1EAX5	1.3e-24	84.85	DNA replication complex GINS protein PSF2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Spg034292 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12530.1	8.8e-21	67.19	PSF2	[more]
AT3G12530.2	4.9e-19	66.67	PSF2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 41..67 e-value: 4.1E-5 score: 24.0
None	No IPR available	GENE3D	3.40.5.50		coord: 2..65 e-value: 1.0E-27 score: 97.9
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 4..59
IPR007257	DNA replication complex GINS protein Psf2	PANTHER	PTHR12772	DNA REPLICATION COMPLEX GINS PROTEIN PSF2	coord: 4..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034292.1	Spg034292.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0000727	double-strand break repair via break-induced replication
cellular_component	GO:0000811	GINS complex
cellular_component	GO:0005634	nucleus