Spg034280 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034280
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold10: 21179258 .. 21186674 (-)
RNA-Seq ExpressionSpg034280
SyntenySpg034280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGACAAGACCGAGTGGGAGGTTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAATTGGTGACTCTGGGATTTGAACAAAGGGATCCTACCGTCTCACTGGCCCGAGAGGGACTTTCTGTTTAATGGTTGGAGCATAAATAGGTTCTTCATTAGAGAAGCGCTGGTACTTAAAGAGACAGATGTAACACAGGTGTAAAACAGTAATTTGACACAGCTGTGATTACGGACACTCGTGAAGGATTGACTTACCAGTATAGGTCTATATCCGTAGACACAAAAATGTTATACAGTGAGAAGAGTTCAGCTCTGAGTCTTTAGTGGAATGACCCACCGTTAATGAATATTGGTTAACCTAATTAATGAGTTTAATCAGTTAACCTCGTATCATTGGATCTTCTGATCTGTAGGTTCATTAGGTCTCCCTGCTAGCTCGTAAAAAGTAATTAGGAACAATTATATCTTGAGAGAATTTTAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTACGAGATACAAATTAATATAATGTATAGTGATACATTAAAATGTAAAGTCTAATTTCAAATTAAACTTTATTATTATGAGAGAAATAAATATTTGAAGAAGTTCAAATATTAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTAGAAGGAGATCAAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCCTGAAATTAAATATATGATATTTAATTAAGTAATTAATTAATTAACTAATAGAAGGTCTAAAAGTAAATATATGATATTTAATTGGTGATTAATTAATTAAAGAATTAATTAATTGGAAATTAATTAATTATGGAAATGATTAATCACTTATGGAAGTAATTAATCATTTATAGAAATGATTTCATCACTTATGGAAGTGATCAATAATTTATGGAAAAAATTAATCGGTTATGGAATTGATTGGTTATGGAATTGATTAATTATGGAAAAGATAAAATGAGTTATGGAAATAATTGATTTTAAATGAATATTTTATTTATGACCTCTCTCCTATAAATAGAACACTAAACCTAGGGTTTAGGTAACACAACATAAGGCCACAAGAATGCACTCTTGCAGTCTCTCTAGCATCCCTCTCATATTCTCCCAACCCAATAACTCTAGGGAGAATTTTCTCTGTATCGTTTTTCCCATTCAAGATTAGGTAGTCCCACAACTACATTCCTAATCTCAGAGTCATAGCGGGGAAGATCAATTGGTGGTGCCCCGATTGTTGACATTTGGTCCCTATGAAATCAAGAAAGGCGTTCTTGATATTTCAGAGACGACAACGACGGTACGTTTGCTTCTCCCCTTTAGATTTAAATCTAATAATTTTTGTATGCTTAGCCTTAAGTTTGTATAGAATATGTGATATGGGTAAAAAATATACAAACTTTAGCTCATTTCCTTGTATTTAGCTCATTTCCTTATATTTACCCTGTTAAAAATATACCTTTTTTACCCTTATATTTAGCTCATTTCCTTATCAAAAGTTGTATGTTTAGGTTAATTTTACTGTTCCCGAGCTCAAAATATGTTAAAGTTGATAAGTTAGGGTGTTGAGATTCACTTGTGTCAAATTATGCTCATTTGTGCTTAAAAGGACTCAATTTTAAGGGAATTTGACTAAGTTTGTTGTTGTGCAGGAAAACAGAGGAAAAGCTGGAATTTTCCCCGCATTTATGGGAAGGCAAAATGAAATGCGGCCGCATTTCTGGAAAAGCTGGGGTAGTTCTGAGTCGTCTGTGGGTCCTTTTGAACGAGACTTCTTCGCACCTAATCGACTGTTTTGACCCCGAAACCGTCTGGGCTACCTACCAGCACCTATTTCGTAGCTCCTCAACAATTTCCAACACTATATTAGCTCTTGATTCGAAGTCAAATTCAAGCAAAAATCATTTGGAAGAAGAGGGTGGTGACAGAACCCTAGTTGACACCTATGAGTAGGGATGCCCGAGGTACTTCTTAGATGACTAAATTCTAACCTTAGTTAGACATCAAACCTTAGGGTCTGTAGGGATTTTCACCCATTCCCACTTGTAAAAGCGAGAGAGTGGAGTGTCTAAGCGAACTCTAGAAGGATTGGATCAATAGAAAACCCATAGTATTTGGCTACTGTCATTATTTCCAGCTTTTGATACTTTTCATTTATCTATATTCTTTACATTTTATTTTCAATGAAAATGTATTCATTTGCACTTTATCTCACCATGAGTAGCTTGAAAGTGTTTTTTTTTGCTTAAGTTGTGTTCAATGCATGTCATTCTTTATTGAATATCATTCTGATCTTGCTGAGTTTAAATTGATCACTTAGACTTTGCATGCTATGTGAGTTTGATCTCGAAAGGGACAAACGATATCGGTTCTCATAAAGGTTATAAAGGAGAAAAAGCTCGAAAGAGATTGTTTGGTGGTATAGGGCAAGTTGCCTAAGGCACCCTATATCAACTATAGGATTATAGATTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGAATAACGGTACTCACTTAGCCTTCTAATGGTTCTTGGGAGCAAGGCCAAATAGAAGTTATATCTGACCCAATGCATTGAATAGGTTTAGGTTAAATAATCCATGATTACGGTTATTGCCTTTGGGATGAATCCATGTTGAATACCTCGTTGTATTCATTGTTGTTAATCTTTTGTTTATTTTCTTGTTTATCTATCTTTTCTAAAAATCAATCATCAATCATTTTCTTTGGTTACCCATTTCAAGCAATCTTTTGAGCAGTTTCTTATTCAAATTTGAATTTCCAACTTTTTCCTCATGGGATTGTTTTTGAGGACGAAATTTTATAAGGGGGAGGTAAGTTGTAAACCCGAGACTTCCCTTGGATTATTTTCTCTAGTCATCTAAAGTGGAAGTTGGATTAAAGTTGTTGGGAGTTATTAATTTAAGAATAAAAGAAGAAAGAAAAGAAAGGAAATGAATAAAGAAAAGAAGAAAAGAATAAAAAAAGGAAGCAAAAAAAAAAAAAAAAGGGAAAATGAATGGAACAAGCACTTTTGGTGGGTAGTGCTATATAGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTGTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTTCAACGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATGTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTTCGTACAACTTTCATGAAGCTTTCGTGAGCCAAAAATGAATTTAAGTAGGTTTAATTTAAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAAATTCTGGACCAATTGGTTCGGCATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGAATAGTACATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAAAATCTGGAAAATCGGGGAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATCTGTGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTTGGTTTTGGTTATTTGACAAGCCAAGAGGAAATAGGTCGGGTCTACAGACCAGGGAACTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTAATCGATCTCTATAAGTCGTTATTTGAGTGATTCAGTAATTTGGTTATTGAATAAATCAAGTTTGCATTAATGAACCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGGACTAGTATGTAGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATCCAATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCTTATGCAATGAGTTTGCATAAGACCGGACTGCGAAATAGTAACCACTGGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACTCCTTTTCAGGAGGGATTGTCCTTAGATTTGTATGGGTGAGAGTGGCCTGCTTGCCGACTCAATATTCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCATTCCTTCCTCTATTGGGGCAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCCGGGGCTTGAACAAAAGCGCGCTGTCCTCTCCTAGCCCGAGAGGAATTTCTGTTTAGTGGTTGGACCCTGAACATGTTGTTCATTAGAGGGATCAGTGGTACTTAAGGATCCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCATTGGTCGATATCCGTGAACGCAGAAATATTCTACAGTGAGAAGAGTGCAGTTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGATTGACTCGGTTAATAAGTTTAGTTGATCAATCTCGTATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCACCTGCTAGCTCATAACGGGTTCTGAGATAATATAGTCTTGATATTAAAGGGAATTTAAGTTAATTGTATTTTGATACAATTAATATAATGTATGGAGATACATTATAGTATAAGTTTAATTATTGAATTAAACTTTATAATAAAATTAATTTTGGATATGATTCAAAATTAATTAATGAGAGAATTATGAATTTAATTAAATATGTGATATTTGGTTAATTCATGAATTAATTAATTGGGAATTAATTAATTTAATTTAATTTGGTTAAATATGATTTAATCAAATTAATACTATAGTTTATATTAATGTTCATTATGATGCACATTAAAACTATAGGTTAAATGAGAGAGATAAAATTGAATATGATTCAATTATAAAATTAATTAAATATTTGATATTTAATTAATGTGGATTCAATTAATGAGATTAATTGAATGGCCAATTTAATTCAATTGAATATGATTAAAATTGAATTAAATACCTTATGTTATAATTGGTTTAATTAATATTGATTTAATTATAATTATTTAATTAATTAAATGATAAATGATATTTATTATTTAATTAATAGACGGCCAAGATCGCTTGGATTTGATCCAACGATCTAGATTGAGTAGGGTTTTAACTCCCTCCCCACTTATCGTTAAGTGGAGAGGGGGTTACCTATCTCAGGTGGCTCCTCTCATTTTCACGAAAAAGAGACAGAGAAAGAAAGTGCTTCTTTTCTCTCTTCCTCTCTAAAATTTCAGCAATTTTACCTTGCTGTTTTTTTTCCCTTCTCCAAGACTACGGGTTCCCACAAGCCAATCTCGAATCCCAAGAGTCATAGTGGGTGATCCAACGTGGTGGTGTTCGTTGGGAGGAAGAAGAACGTATATTGGAGCATTGTGCTGAGTTCTTCAAGTCCATGTAAGTTTCCTTAGATCTAAATAAGTTTTAGATCTAATTATTCAGCATGCTTAATCTGTAATAGTTTAATTTAGAAATTGTTTCTAATTTTAATTTGCCAACGTATTGGTTTTTTCTAAAATTGAAATTTAATTCGAGAATGGTCTTGTTTGCTTCCGCTGCCAAAAGGGATTTTAACCCTTCAGGAACTTGCTAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGATACATGGTCTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAAATTTTCTAATGAGGTTTATAAATGAGTACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCAAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCCGTTTTTTTTTTCACGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGGCATGTTCTAACGTTTTCATGTGATTTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGTTGGGAGGGCCCCACTATGACAAAGACGATGGGAGTGCTAGGCGGACCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGATCATGTTAGTTAAAATGTTTGATGTACTTGATATGTCTTGCTAGATTTTTAATGACGAGCCTGCGATGTTTTTAAGAAAGCTTTTATCGTTGCACGTTTATGTTTAACGCCTATGTTGAGCATCTTTATACGCTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAAGTTAGTCACTCACTAGGCTTCGTAGCTCATTCTTTTAAAATGTTTTTCCACATTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTAAGGATTGGACAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCATTTGTATATGTTTTTGGTTGTGAAATCTATATCAGGTTATCTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTGTATATTAGAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTGGAATGTTTTATGTCTAAGATTAGTATGTTTATCAGGTTCTACATTTTAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGCCGGGAGGGGGTGTGA

mRNA sequence

ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGACAAGACCGAGTGGGAGGTTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCTTCATTAGAGAAGCGCTGGAAAACAGAGGAAAAGCTGGAATTTTCCCCGCATTTATGGGAAGGCAAAATGAAATGCGGCCGCATTTCTGGAAAAGCTGGGGTAGTTCTGAGTCGTCTGTGGGTCCTTTTGAACGAGACTTCTTCGCACCTAATCGACTGTTTTGACCCCGAAACCGTCTGGGCTACCTACCAGCACCTATTTCGTAGCTCCTCAACAATTTCCAACACTATATTAGCTCTTGATTCGAAGATTATAGATTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGAATAACGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTGTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCATTCCTTCCTCTATTGGGGCAAGCATGTTCTAACGTTTTCATGTGATTTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGCCGGGAGGGGGTGTGA

Coding sequence (CDS)

ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGACAAGACCGAGTGGGAGGTTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCTTCATTAGAGAAGCGCTGGAAAACAGAGGAAAAGCTGGAATTTTCCCCGCATTTATGGGAAGGCAAAATGAAATGCGGCCGCATTTCTGGAAAAGCTGGGGTAGTTCTGAGTCGTCTGTGGGTCCTTTTGAACGAGACTTCTTCGCACCTAATCGACTGTTTTGACCCCGAAACCGTCTGGGCTACCTACCAGCACCTATTTCGTAGCTCCTCAACAATTTCCAACACTATATTAGCTCTTGATTCGAAGATTATAGATTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGAATAACGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTGTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCATTCCTTCCTCTATTGGGGCAAGCATGTTCTAACGTTTTCATGTGATTTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGCCGGGAGGGGGTGTGA

Protein sequence

MGESGQYADSICLSFWDKTEWEVGDMTTQEGIHSFPLLGEVDECSSLEKRWKTEEKLEFSPHLWEGKMKCGRISGKAGVVLSRLWVLLNETSSHLIDCFDPETVWATYQHLFRSSSTISNTILALDSKIIDCIRELSMSESSHRNVNNGKVHHRLTHSSHISQYFPPKISEHLRERVKEEEEEDCRGLRLKKIGKAHAKPAIAESGIFEQSRRISGFLWFLEHSGVYKLNQKLYLGQDRMGAGNITVQDGIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVSLEEDDVRWLHAIFRTKLAGGPGGREGV
Homology
[Close]
BLAST of Spg034280 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-26
Identity = 117/296 (39.53%), Postives = 132/296 (44.59%), Query Frame = 0 

Query: 139 SESSHRNVNNGKVHH---RLTHSSHIS--QYFPPKISEHLRERVKEEEEEDCRGLRLKKI 198
           S  S   +   KVHH    L   + IS   +FP K+SEH  ERVKEEEEE  RGLRLKKI
Sbjct: 37  SSVSRSGIGQHKVHHCKLILFQPNFISFLHHFPSKLSEHFEERVKEEEEE-FRGLRLKKI 96

Query: 199 GKAHAKPAIAESGIFEQSRRISGFLWF---LEHSGVYKLNQKLYLGQDRMGAGNITVQD- 258
           GK+  K           S +  GFL F   L    V K NQKLY   +   +G   V   
Sbjct: 97  GKSSCKANHCRIWSTGFSSKPRGFLVFSDALSILEVQKSNQKLYWDIESGKSGKWDVMPR 156

Query: 259 GIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQV----------------- 318
           G  S L  G+       D  EISIDYMTEILS RLYGTVC QV                 
Sbjct: 157 GNRSSLQTGQ------LDKIEISIDYMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVV 216

Query: 319 ----------------------------------------EIELPVPDTLPTSAESSRSS 356
                                                   EIEL VPDTLPTSAESS S+
Sbjct: 217 SVGQTHYDKDDGVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSN 276

[Close]
BLAST of Spg034280 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 7.0e-22
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = 0 

Query: 276 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVE 335
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 336 LYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG 356
           LY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]
BLAST of Spg034280 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 7.0e-22
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = 0 

Query: 276 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVE 335
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 336 LYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG 356
           LY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]
BLAST of Spg034280 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-18
Identity = 62/120 (51.67%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 271  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS 330
            +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+S
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNS 1340

Query: 331  STWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG 356
            STW+ELY+ESV++                  EG    +  DDV WLHA+FR K AGGP G
Sbjct: 1341 STWLELYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEG 1400

[Close]
BLAST of Spg034280 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-17
Identity = 55/100 (55.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 276 MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIE-------- 335
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESV++E        
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 336 -------------GQRVSLEEDDVRWLHAIFRTKLAGGPG 355
                        G    +  DDV WLHA+FR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]
BLAST of Spg034280 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-26
Identity = 117/296 (39.53%), Postives = 132/296 (44.59%), Query Frame = 0 

Query: 139 SESSHRNVNNGKVHH---RLTHSSHIS--QYFPPKISEHLRERVKEEEEEDCRGLRLKKI 198
           S  S   +   KVHH    L   + IS   +FP K+SEH  ERVKEEEEE  RGLRLKKI
Sbjct: 37  SSVSRSGIGQHKVHHCKLILFQPNFISFLHHFPSKLSEHFEERVKEEEEE-FRGLRLKKI 96

Query: 199 GKAHAKPAIAESGIFEQSRRISGFLWF---LEHSGVYKLNQKLYLGQDRMGAGNITVQD- 258
           GK+  K           S +  GFL F   L    V K NQKLY   +   +G   V   
Sbjct: 97  GKSSCKANHCRIWSTGFSSKPRGFLVFSDALSILEVQKSNQKLYWDIESGKSGKWDVMPR 156

Query: 259 GIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQV----------------- 318
           G  S L  G+       D  EISIDYMTEILS RLYGTVC QV                 
Sbjct: 157 GNRSSLQTGQ------LDKIEISIDYMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVV 216

Query: 319 ----------------------------------------EIELPVPDTLPTSAESSRSS 356
                                                   EIEL VPDTLPTSAESS S+
Sbjct: 217 SVGQTHYDKDDGVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSN 276

[Close]
BLAST of Spg034280 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-22
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = 0 

Query: 276 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVE 335
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 336 LYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG 356
           LY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]
BLAST of Spg034280 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-22
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = 0 

Query: 276 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVE 335
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 336 LYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG 356
           LY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]
BLAST of Spg034280 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-19
Identity = 62/120 (51.67%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 271  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS 330
            +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+S
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNS 1340

Query: 331  STWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG 356
            STW+ELY+ESV++                  EG    +  DDV WLHA+FR K AGGP G
Sbjct: 1341 STWLELYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEG 1400

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BLAST of Spg034280 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.7e-18
Identity = 55/100 (55.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 276 MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIE-------- 335
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESV++E        
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 336 -------------GQRVSLEEDDVRWLHAIFRTKLAGGPG 355
                        G    +  DDV WLHA+FR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

The following BLAST results are available for this feature:
BLAST of Spg034280 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.12.1e-2639.53hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
TYK27998.17.0e-2262.63reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.17.0e-2262.63reverse transcriptase [Cucumis melo var. makuwa][more]
TYK08952.11.2e-1851.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0062407.11.4e-1755.00uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Spg034280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC61.0e-2639.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DX393.4e-2262.63Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG93.4e-2262.63Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3CCC76.0e-1951.67DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V6386.7e-1855.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg034280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034280.1Spg034280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0008233 peptidase activity