Spg033604 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033604
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	scaffold5: 1869167 .. 1869770 (+)
RNA-Seq Expression	Spg033604
Synteny	Spg033604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCAGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCATATTGGTTCTGTACGAGCCAATAACAGCAGGGCTCGTACCCCTTTTAGGATTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCCGTCTATCCTCTTCAAATTTGTGGATTTTTCCCATTTCTGTTTCACCTGTTGATAAATTCGCTTACATCTGAAAAGCTTAGAGAAATTCGGAACAATAAATTCATTTGGGCTTGCGAGTTACCTCTTCTTTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAGTCTGGAACTCCAGAGCCTGCATGATAGGCCTCATTGGGATTTTTGTAGTAGAACTGGTGAGTTTTCTTTTATAAAAGAAAAGGAAAAGTTTCTATCTCTTACCTTCTATATTCAAGTTTCTGGGCTTTATTCATTTTTGTCTGATTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA

mRNA sequence

ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCAGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCATATTGGTTCTGTACGAGCCAATAACAGCAGGGCTCGTACCCCTTTTAGGATTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCCGTCTATCCTCTTCAAATTTGTGGATTTTTCCCATTTCTGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAGTCTGGAACTCCAGAGCCTGCATGATAGGCCTCATTGGGATTTTTGTAGTAGAACTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA

Coding sequence (CDS)

ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCAGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCATATTGGTTCTGTACGAGCCAATAACAGCAGGGCTCGTACCCCTTTTAGGATTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCCGTCTATCCTCTTCAAATTTGTGGATTTTTCCCATTTCTGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAGTCTGGAACTCCAGAGCCTGCATGATAGGCCTCATTGGGATTTTTGTAGTAGAACTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA

Protein sequence

MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

Homology

[Close]

BLAST of Spg033604 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 204.9 bits (520), Expect = 4.3e-49
Identity = 108/134 (80.60%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASSS MLSSSLLPARAPT NRQDGRLCLF IGSVRANNSRAR PFR+QAAK PAG    
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKVEPKFEAPFLGFTKTAE+WNSRACM+GL+GIF+VELIL+KGILQ
Sbjct: 61  -----------VELPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVDVGKGLDLPL
Sbjct: 121 VIGVDVGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-49
Identity = 109/134 (81.34%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASSS +LSSSLLPARAP  ++QDGRLCLF IGSVRANNSR+R PFR+QAAKPPAG    
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ
Sbjct: 61  -----------VELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVDVGKGLDLPL
Sbjct: 121 VIGVDVGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASS+T+LSSSLLPARAP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG    
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKV+PKFEAPFLGFTKTAE+WNSRA MIGLIGIFVVELILNKGILQ
Sbjct: 61  -----------VELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVD+GKGLDLPL
Sbjct: 121 VIGVDIGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 9.0e-47
Identity = 104/134 (77.61%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASS+T+LSSSLLPA AP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG    
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKV+PKFEAPFLGFTKTAE+WNSRA MIGLIGIFVVELILNKGILQ
Sbjct: 61  -----------VELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVD+GKGLDLPL
Sbjct: 121 VIGVDIGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-41
Identity = 105/136 (77.21%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVR 60
           MASSS +L SSL PARA T N QD R CLF IG SVRAN+SRART FRIQ AAKPPAG  
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAG-- 60

Query: 61  RLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGI 120
                        VELPKVEPKF+APFLGFTKTAE+WNSRACMIGLIGIFVVELILNKGI
Sbjct: 61  -------------VELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGI 120

Query: 121 LQVIGVDVGKGLDLPL 135
           LQVIGVDVGKGLDLPL
Sbjct: 121 LQVIGVDVGKGLDLPL 120

[Close]

BLAST of Spg033604 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-23
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 4   SSTMLSSSLLPARAPTSNRQDGR---LCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 63
           SS+ LSSSL    +  S    GR   LC           +R + PF ++AAK P G    
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEG---- 61

Query: 64  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 123
                      V +PK +PK +  FLGFT+TAE+WNSRACMIGLIG F+VELILNKGIL+
Sbjct: 62  -----------VIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILE 110

Query: 124 VIGVDVGKGLDLPL 135
           +IGV++GKGLDLPL
Sbjct: 122 LIGVEIGKGLDLPL 110

[Close]

BLAST of Spg033604 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 108/134 (80.60%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASSS MLSSSLLPARAPT NRQDGRLCLF IGSVRANNSRAR PFR+QAAK PAG    
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKVEPKFEAPFLGFTKTAE+WNSRACM+GL+GIF+VELIL+KGILQ
Sbjct: 61  -----------VELPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVDVGKGLDLPL
Sbjct: 121 VIGVDVGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.8e-48
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASS+T+LSSSLLPARAP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG    
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKV+PKFEAPFLGFTKTAE+WNSRA MIGLIGIFVVELILNKGILQ
Sbjct: 61  -----------VELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVD+GKGLDLPL
Sbjct: 121 VIGVDIGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.8e-48
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 60
           MASS+T+LSSSLLPARAP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG    
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAG---- 60

Query: 61  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 120
                      VELPKV+PKFEAPFLGFTKTAE+WNSRA MIGLIGIFVVELILNKGILQ
Sbjct: 61  -----------VELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQ 119

Query: 121 VIGVDVGKGLDLPL 135
           VIGVD+GKGLDLPL
Sbjct: 121 VIGVDIGKGLDLPL 119

[Close]

BLAST of Spg033604 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 105/136 (77.21%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVR 60
           MASSS +L SSL PARA T N QD R CLF IG SVRAN+SRART FRIQ AAKPPAG  
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAG-- 60

Query: 61  RLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGI 120
                        VELPKVEPKF+APFLGFTKTAE+WNSRACMIGLIGIFVVELILNKGI
Sbjct: 61  -------------VELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGI 120

Query: 121 LQVIGVDVGKGLDLPL 135
           LQVIGVDVGKGLDLPL
Sbjct: 121 LQVIGVDVGKGLDLPL 120

[Close]

BLAST of Spg033604 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 103/136 (75.74%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVR 60
           MASSS +L SSL PARA T N+QDGR  LF IG SVRANNSRAR  FR+Q AAKPPAG  
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAG-- 60

Query: 61  RLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGI 120
                        VELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELILNK I
Sbjct: 61  -------------VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSI 120

Query: 121 LQVIGVDVGKGLDLPL 135
           LQVIGVDVGKGLDLPL
Sbjct: 121 LQVIGVDVGKGLDLPL 120

[Close]

BLAST of Spg033604 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-24
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 4   SSTMLSSSLLPARAPTSNRQDGR---LCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRL 63
           SS+ LSSSL    +  S    GR   LC           +R + PF ++AAK P G    
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEG---- 61

Query: 64  SSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQ 123
                      V +PK +PK +  FLGFT+TAE+WNSRACMIGLIG F+VELILNKGIL+
Sbjct: 62  -----------VIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILE 110

Query: 124 VIGVDVGKGLDLPL 135
           +IGV++GKGLDLPL
Sbjct: 122 LIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of Spg033604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145630.1	4.3e-49	80.60	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]
XP_038905156.1	7.3e-49	81.34	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022934608.1	1.8e-47	78.36	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]
XP_023526506.1	9.0e-47	77.61	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp....	[more]
XP_004137791.1	4.3e-41	77.21	light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN...	[more]

BLAST of Spg033604 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	3.2e-23	50.00	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Spg033604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV10	2.1e-49	80.60	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A6J1J0W8	8.8e-48	78.36	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	8.8e-48	78.36	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]
A0A0A0LAI0	2.1e-41	77.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	1.5e-39	75.74	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Spg033604 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	2.3e-24	50.00	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..131
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..131
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 80..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033604.1	Spg033604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane