Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAGCCAGGTGAGAGCTTACGTGATTATATAACATGTTTTAACGAGGAAGCACTTCAGGTAGAAGGATACAGTGGTGAAGTGGCCCTGGTAGCCATAACCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCTGAATTTGTTTCCAGGGCCCAGAAGTACATGAGTGCAGAGGAGTTGCTTAGATCGAAGAGGTCAGAGCACAAAAGGCATTCTTTAGTCGACCGAGACCAAAAAGAACAAAAGACTGCGGACAGATGAAGGAGGCCGAGGCCGACGAGACAGAGGAGACTACACAAGAAAGTTTGAGAAGTATACTCCTACATCAGACCCACAAGAGCAAATCTTGATGGAAATTCAAAATACGAACCTACTCAATGTGCCTAGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGATATTCAATTAGGAACTACATTCAGCCGAAGGACGAAATTGAAGCACTGATTCGGAACGGGTACCTGAAGGAGTTCACCACTAAGTCTGAGGCCGACCAGAGATGGCTGAGGCCGATGATAACTCTCCAAAAGGGAGTTATTTAG
mRNA sequence
ATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAGCCAGGTGAGAGCTTACGTGATTATATAACATGTTTTAACGAGGAAGCACTTCAGGTAGAAGGATACAGTGGTGAAGTGGCCCTGGTAGCCATAACCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCTGAATTTGTTTCCAGGGCCCAGAAGTACATGAGTGCAGAGGAGTTGCTTAGATCGAAGAGAGGAGACTACACAAGAAAGTTTGAGAAGTATACTCCTACATCAGACCCACAAGAGCAAATCTTGATGGAAATTCAAAATACGAACCTACTCAATGTGCCTAGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGATATTCAATTAGGAACTACATTCAGCCGAAGGACGAAATTGAAGCACTGATTCGGAACGGGTACCTGAAGGAGTTCACCACTAAGTCTGAGGCCGACCAGAGATGGCTGAGGCCGATGATAACTCTCCAAAAGGGAGTTATTTAG
Coding sequence (CDS)
ATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAGCCAGGTGAGAGCTTACGTGATTATATAACATGTTTTAACGAGGAAGCACTTCAGGTAGAAGGATACAGTGGTGAAGTGGCCCTGGTAGCCATAACCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCTGAATTTGTTTCCAGGGCCCAGAAGTACATGAGTGCAGAGGAGTTGCTTAGATCGAAGAGAGGAGACTACACAAGAAAGTTTGAGAAGTATACTCCTACATCAGACCCACAAGAGCAAATCTTGATGGAAATTCAAAATACGAACCTACTCAATGTGCCTAGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGATATTCAATTAGGAACTACATTCAGCCGAAGGACGAAATTGAAGCACTGATTCGGAACGGGTACCTGAAGGAGTTCACCACTAAGTCTGAGGCCGACCAGAGATGGCTGAGGCCGATGATAACTCTCCAAAAGGGAGTTATTTAG
Protein sequence
MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKRGDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQRWLRPMITLQKGVI
Homology
BLAST of Spg032963 vs. NCBI nr
Match:
XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])
HSP 1 Score: 172.6 bits (436), Expect = 3.4e-39
Identity = 99/232 (42.67%), Postives = 134/232 (57.76%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+G R + +P LLT+KQ+ ESLRDY+ FNEE LQVEG + V+L+A +G+ DE L
Sbjct: 267 VGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLS 326
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR---------------------------- 120
S GK P T++E +SRAQ+YMSA E SKR
Sbjct: 327 FSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDKPQGSRWEKRDR 386
Query: 121 ---GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGY 180
D RKFEKYTPT+ P EQ+LMEI++ LL P ++K++ KR K +YCLFHRDHG+
Sbjct: 387 SSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGH 446
Query: 181 SIRNYIQPKDEIEALIRNGYLKEF------TTKSEADQRWLRPMITLQKGVI 196
+ ++ K+E+E LIR GYLKE+ T E+D+ R + T+ G I
Sbjct: 447 ATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDKSPAREIRTIMGGPI 498
BLAST of Spg032963 vs. NCBI nr
Match:
XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])
HSP 1 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 89/212 (41.98%), Postives = 123/212 (58.02%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+G R + +P LLT+KQ+ ESL DY+ FN+E LQ+E + V+L+A +G+ DE L
Sbjct: 51 VGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLS 110
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR---------------------------- 120
S GK P T++E +SRAQ+YMSA E SKR
Sbjct: 111 FSFGKKTPSTFSETLSRAQRYMSAGEFFYSKREPDGKRTDQKRERSGDKPQGSRWEKRDR 170
Query: 121 ---GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGY 180
D RKFEKYTPT+ P EQ+LMEI++ LL P ++K KR K +YCLFHRDH +
Sbjct: 171 SSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLFHRDHNH 230
Query: 181 SIRNYIQPKDEIEALIRNGYLKEFTTKSEADQ 182
+ ++Y K+E+E LIR GYL+E+ + +A Q
Sbjct: 231 ATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQ 262
BLAST of Spg032963 vs. NCBI nr
Match:
XP_024042801.1 (uncharacterized protein LOC112099618 [Citrus clementina])
HSP 1 Score: 151.4 bits (381), Expect = 8.2e-33
Identity = 88/226 (38.94%), Postives = 126/226 (55.75%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+GAR+Q+ P L VKQ ESL+D IT FN+E ++VE YS VAL I GL+ +
Sbjct: 73 VGARDQQFPPTYFLLVKQGKDESLKDCITRFNKEVVRVENYSDAVALTTIMVGLQPGKFH 132
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELLRSKRG---DYTR-------------------- 120
S+ K+ RT+ E +SRAQKY + +EL +KRG D R
Sbjct: 133 YSLAKNPARTFTELLSRAQKYSNVDELTNAKRGANSDSPRVAEKRKIKEEQIKNKEKTSR 192
Query: 121 -----------KFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRD 180
+F +YTP + P+EQ+LM+I+N +LL P+ +K P++RD+S+YC +HRD
Sbjct: 193 LEKKGPKILQSRFPRYTPLNLPEEQVLMQIRNLDLLRKPKDIKIAPNRRDRSKYCRYHRD 252
Query: 181 HGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQRWLRPMITLQK 193
H ++I + K+EI++LI+ GYLKEF K R P QK
Sbjct: 253 HRHNIEDCFDLKEEIKSLIQRGYLKEFVRKDGGRIRDEEPSHAPQK 298
BLAST of Spg032963 vs. NCBI nr
Match:
XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])
HSP 1 Score: 146.4 bits (368), Expect = 2.6e-31
Identity = 86/211 (40.76%), Postives = 116/211 (54.98%), Query Frame = 0
Query: 22 ESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKY 81
ESL DY+T FN+E LQVEG + V+L+A G+ DE L S GK P T++E +SRAQ+Y
Sbjct: 113 ESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRY 172
Query: 82 MSAEELLRSKR-------------------------------GDYTRKFEKYTPTSDPQE 141
MSA E SKR D +KFEKYT T+ P E
Sbjct: 173 MSAGEFFYSKRESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTTVPLE 232
Query: 142 QILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYL 196
Q+LMEI+N LL P ++ ++ KR K +YCLFH DHG++ ++ K+E+E LI GYL
Sbjct: 233 QVLMEIKNQRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLILRGYL 292
BLAST of Spg032963 vs. NCBI nr
Match:
XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])
HSP 1 Score: 134.8 bits (338), Expect = 8.0e-28
Identity = 75/221 (33.94%), Postives = 117/221 (52.94%), Query Frame = 0
Query: 3 AREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNS 62
AR++ KP LLTVKQQ GE+LRDYI +N E QV+GY +AL I GL +L S
Sbjct: 266 ARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWS 325
Query: 63 IGKSQPRTYAEFVSRAQKYMSAEELLRSK---RGDYTR---------------------- 122
+ K P +Y+E ++RA+KY +AEE +++ +G+ T+
Sbjct: 326 VSKRPPTSYSEMLARAEKYANAEERFKNRNQEKGESTKGKKKKDDQRERRVVRPDQSLRR 385
Query: 123 --------------------KFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDK 179
+F +T + P+EQILM+++N L P +K+NP +R+
Sbjct: 386 NQFRPGERSEVRDTRPRLASQFTNFTELNTPREQILMQVRNPTLFRTPPPMKTNPSRRNP 445
BLAST of Spg032963 vs. ExPASy TrEMBL
Match:
A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 99/232 (42.67%), Postives = 134/232 (57.76%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+G R + +P LLT+KQ+ ESLRDY+ FNEE LQVEG + V+L+A +G+ DE L
Sbjct: 267 VGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLS 326
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR---------------------------- 120
S GK P T++E +SRAQ+YMSA E SKR
Sbjct: 327 FSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDKPQGSRWEKRDR 386
Query: 121 ---GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGY 180
D RKFEKYTPT+ P EQ+LMEI++ LL P ++K++ KR K +YCLFHRDHG+
Sbjct: 387 SSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGH 446
Query: 181 SIRNYIQPKDEIEALIRNGYLKEF------TTKSEADQRWLRPMITLQKGVI 196
+ ++ K+E+E LIR GYLKE+ T E+D+ R + T+ G I
Sbjct: 447 ATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDKSPAREIRTIMGGPI 498
BLAST of Spg032963 vs. ExPASy TrEMBL
Match:
A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 7.8e-37
Identity = 89/212 (41.98%), Postives = 123/212 (58.02%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+G R + +P LLT+KQ+ ESL DY+ FN+E LQ+E + V+L+A +G+ DE L
Sbjct: 51 VGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLS 110
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR---------------------------- 120
S GK P T++E +SRAQ+YMSA E SKR
Sbjct: 111 FSFGKKTPSTFSETLSRAQRYMSAGEFFYSKREPDGKRTDQKRERSGDKPQGSRWEKRDR 170
Query: 121 ---GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGY 180
D RKFEKYTPT+ P EQ+LMEI++ LL P ++K KR K +YCLFHRDH +
Sbjct: 171 SSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLFHRDHNH 230
Query: 181 SIRNYIQPKDEIEALIRNGYLKEFTTKSEADQ 182
+ ++Y K+E+E LIR GYL+E+ + +A Q
Sbjct: 231 ATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQ 262
BLAST of Spg032963 vs. ExPASy TrEMBL
Match:
A0A6J1CNT2 (uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012805 PE=4 SV=1)
HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 86/211 (40.76%), Postives = 116/211 (54.98%), Query Frame = 0
Query: 22 ESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKY 81
ESL DY+T FN+E LQVEG + V+L+A G+ DE L S GK P T++E +SRAQ+Y
Sbjct: 113 ESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRY 172
Query: 82 MSAEELLRSKR-------------------------------GDYTRKFEKYTPTSDPQE 141
MSA E SKR D +KFEKYT T+ P E
Sbjct: 173 MSAGEFFYSKRESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTTVPLE 232
Query: 142 QILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYL 196
Q+LMEI+N LL P ++ ++ KR K +YCLFH DHG++ ++ K+E+E LI GYL
Sbjct: 233 QVLMEIKNQRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLILRGYL 292
BLAST of Spg032963 vs. ExPASy TrEMBL
Match:
A0A2N9HJ21 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39860 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 71/189 (37.57%), Postives = 110/189 (58.20%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+GA+ +P +LL +KQ+ GE+LR Y+T FN+E L V+G +V L A +GL+ L
Sbjct: 274 IGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTAFISGLQAGDFL 333
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELLRS-------KRGDYTRKFEKYTPTSDPQEQIL 120
S+ K P T E + AQ++M+ EE L + KR + +F +TP + P + I
Sbjct: 334 FSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTVGKKRKGFNERFNHFTPLNAPVDHIF 393
Query: 121 MEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEF 180
M+I+N L P KL ++PDKR + +YC FHRDHG++ + K +IE LI+ G L+ F
Sbjct: 394 MQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDHGHNTEDCYDLKRQIEELIKQGKLQRF 453
Query: 181 TTKSEADQR 183
+ + + R
Sbjct: 454 VERGQREGR 462
BLAST of Spg032963 vs. ExPASy TrEMBL
Match:
A0A2N9GH90 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26844 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 72/198 (36.36%), Postives = 111/198 (56.06%), Query Frame = 0
Query: 1 MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLL 60
+GA+ +P +LL +KQ+ GE+LR Y+T FN+E L V+G +V L A +GL+ L
Sbjct: 1216 IGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTAFISGLQAGDFL 1275
Query: 61 NSIGKSQPRTYAEFVSRAQKYMSAEELL----------------RSKRGDYTRKFEKYTP 120
S+ K P T E + AQ++M+ EE L R+ RG + +F +TP
Sbjct: 1276 FSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTVGKKRKRHEDRNGRG-FNERFNHFTP 1335
Query: 121 TSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEAL 180
+ P + I M+I+N L P KL ++PDKR + +YC FHRDHG++ + K +IE L
Sbjct: 1336 LNAPVDHIFMQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDHGHNTEDCYDLKRQIEEL 1395
Query: 181 IRNGYLKEFTTKSEADQR 183
I+ G L+ F + + + R
Sbjct: 1396 IKQGKLQRFVERGQREGR 1412
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DWY0 | 1.7e-39 | 42.67 | uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1DYL6 | 7.8e-37 | 41.98 | uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1CNT2 | 1.3e-31 | 40.76 | uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
A0A2N9HJ21 | 1.0e-28 | 37.57 | Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39860 PE=4 SV=1 | [more] |
A0A2N9GH90 | 2.5e-27 | 36.36 | Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26844 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |