Spg032948 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032948
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 15172211 .. 15174539 (+)
RNA-Seq Expression	Spg032948
Synteny	Spg032948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACACTCAGGATTAAGACTGAGTTACGTAGTTCATCCTATTGAAATAGTAACCTAACTAGTTAACCGTGTTACATCTAGTGGTTTACTATTTCGTGGTCCAGTCTTATGCAAACTCATTGCATAGGATACCCCTGCTCGCATGTCTCCTACATGGACACCTTGGATCAATACGTCTGTATCAAATACAAAACGGGTCGTATCACATAGTGTTACTAGGATAAGGTACCCAGCCTTATCCCTGTACTATAAACCTTTTAGGTTGCTACTTGAACACCGATCCCCATATGTCCCCACATACTAGTGCAAGTTACATGTAAACAACCTTGGATCTTAGTTTATTGGATTTGGGTCATATTGTGCAATTCTAGACTTCATATGACAATAACACATTATTGCTTAAACCTCAATAACACTTTATTGACACAAGTATATAATTTGTTAACATTCACTATCTACGAGTTTTAGGACATAAAACCCAACACCCCGTATGTCTCCACATACAGTTTAAGACTCATGCAACAACCTAGGATGTTAGTTTATTGGATTTATGGTTATTTAAGACAAAACTAATACAATAATTCGATAGCTCTTTATAGAATAATAATCAATATCACTTTATTGATAACGGTCAATAATTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACACACAAAACTCTCTCAAGCTCTCTTTTCTCTCCCTAATTCACATCATAATTGATTCCCACAAGTCGTTCTAGCGGTAGTCAACGGTGTGTTCGTTATCCAATTCATCCATCAAGTTGCTGTGAATGTGAACTACAAGAGGTTGGTACTCACACACTCTGTTTTTCCCTTTTAAAGAGCATGCTTTTCTTAATCAAAATTGACGTAATTTAAGTGCCTGATATCCTAATTGCTTCTGCATGAGTGTTATACATTCTTTCATCTTCATCTAATTCATCCTCAAGATTGGAATGGTGGAAAACTCTTTGGAATCTTCATATCCCTCATAAGGTTAAAATTTTCATGTGGAGAGCTTGTCATAATGTGTTGCCTACATTCTCTAATCTAGACCGGAAGCAAGTGGAAACTATACCCTATTGCCCAAAGTGTAAAGTGGAGACGAAAACAGAGATTCATACTCTTTGGAGTTGCAAAAAAATTCAAATGCTTTGGACAAAATGAAATCCTTTAGATAAGTTTTTAAACCAAATTTATACCGATATTCTCTATTTATCTTGCAGGGCTCGTGAAATTCTAACCATAGTAGAATTGGAAGCATTCTCAATGATTCTATGGGCGATGTGGAACGATAGGAACTTCGAAATTCATAACACAGACAAAATCCCAAAGGACGATCCTATTCATAAAGCTCTAAACTACCTGGATGAATTCAAAGCAACAAGTATAAAGGAGAATCAAGTAAGGAATACAGTAGATCAGAATAGAGGGAATCCAAAAGCAACAGACTTCACCAGCACAAGAAATATTATAGATCAGAAGGAAAGGTGGATGGCACCGAAAAGGAATACTTACAAGGTTAATGTCGATGCTTCTGTCTGTAACGCCCCGTGTTATAAAAAAATTAAGCTAATTCTAGATCATTTGGGTCTATTCCCTAAAGTTTGTATCTAGAATTTAGACCTGGCGACTAAGTTGACTAATTAAATTTCTTGAATTTAGGGAAAAGAGATTTAATTAAATCTTTAATTCTCTAGTCTTGAGATTTTATTTTTATCCTTATGACCTAAGTTTAAAGGAAACCAAATTTTCTTCTAATCAGATTTTTACCCCAATCTTTAGGTTTCTTATTGTGGGTTTTCAAAGTTGGAAATTTAGAAAGTCCTAGAATTTTCCTTTTCTAAATTGATTGAGTTGAATTGGGAAATTAAAATCCCTAGGCCTTCTCTCCTTATTTTATTTATTGGATTCTTTAATTGGGAAAAACTAAAAGAAATAAAATATCAAGAAAACCCTAGAGTCCATCTCTTTCCCTCTCTTTCTCTTCAGCCGTGAACACCCCCCCAAAATCTTCTTCTCTTCACGCGTGGATAGGTCCCCCTGTGTTATTCCTCTCGTCGGCGACCACAACGGCGTTTTTCCATGTGAGCAACCCGCAAGCCGCCGAGTCCCTTTCTCCCGCTTCTTCTCTTCGCGTGCATCCTCTTCCCCGGCGTCGACCCACGCGAGCATGCAACCTGCGGTGGGCAGTTTGTGACTCGTCTCTTCCTCTCCCGTTGTTCTGTCAGTCATCACATGGGTCTCGGAATCTCTTCATTCTCGGCCTCTCCTCTAGTGACAAGCTCGACGGCATGATACCCACTGTAGAATAG

mRNA sequence

ATGACACACTCAGGATTAAGACTGAGTTACGTAGATACCCCTGCTCGCATGTCTCCTACATGGACACCTTGGATCAATACGTCTGTATCAAATACAAAACGGGTCGTATCACATAGTGTTACTAGGATAAGGGCTCGTGAAATTCTAACCATAGTAGAATTGGAAGCATTCTCAATGATTCTATGGGCGATGTGGAACGATAGGAACTTCGAAATTCATAACACAGACAAAATCCCAAAGGACGATCCTATTCATAAAGCTCTAAACTACCTGGATGAATTCAAAGCAACAAGTATAAAGGAGAATCAAGTAAGGAATACAGTAGATCAGAATAGAGGGAATCCAAAAGCAACAGACTTCACCAGCACAAGAAATATTATAGATCAGAAGGAAAGGTGGATGGCACCGAAAAGGAATACTTACAAGGTTAATGTCGATGCTTCTGTCTCCGTGAACACCCCCCCAAAATCTTCTTCTCTTCACGCGTGGATAGGTCCCCCTGTGTTATTCCTCTCGTCGGCGACCACAACGGCGTTTTTCCATGTGAGCAACCCGCAAGCCGCCGAGTCCCTTTCTCCCGCTTCTTCTCTTCGCGTGCATCCTCTTCCCCGGCGTCGACCCACGCGAGCATGCAACCTGCGGTGGGCAGTTTGTGACTCGTCTCTTCCTCTCCCGTTGTTCTGTCAGTCATCACATGGGTCTCGGAATCTCTTCATTCTCGGCCTCTCCTCTAGTGACAAGCTCGACGGCATGATACCCACTGTAGAATAG

Coding sequence (CDS)

ATGACACACTCAGGATTAAGACTGAGTTACGTAGATACCCCTGCTCGCATGTCTCCTACATGGACACCTTGGATCAATACGTCTGTATCAAATACAAAACGGGTCGTATCACATAGTGTTACTAGGATAAGGGCTCGTGAAATTCTAACCATAGTAGAATTGGAAGCATTCTCAATGATTCTATGGGCGATGTGGAACGATAGGAACTTCGAAATTCATAACACAGACAAAATCCCAAAGGACGATCCTATTCATAAAGCTCTAAACTACCTGGATGAATTCAAAGCAACAAGTATAAAGGAGAATCAAGTAAGGAATACAGTAGATCAGAATAGAGGGAATCCAAAAGCAACAGACTTCACCAGCACAAGAAATATTATAGATCAGAAGGAAAGGTGGATGGCACCGAAAAGGAATACTTACAAGGTTAATGTCGATGCTTCTGTCTCCGTGAACACCCCCCCAAAATCTTCTTCTCTTCACGCGTGGATAGGTCCCCCTGTGTTATTCCTCTCGTCGGCGACCACAACGGCGTTTTTCCATGTGAGCAACCCGCAAGCCGCCGAGTCCCTTTCTCCCGCTTCTTCTCTTCGCGTGCATCCTCTTCCCCGGCGTCGACCCACGCGAGCATGCAACCTGCGGTGGGCAGTTTGTGACTCGTCTCTTCCTCTCCCGTTGTTCTGTCAGTCATCACATGGGTCTCGGAATCTCTTCATTCTCGGCCTCTCCTCTAGTGACAAGCTCGACGGCATGATACCCACTGTAGAATAG

Protein sequence

MTHSGLRLSYVDTPARMSPTWTPWINTSVSNTKRVVSHSVTRIRAREILTIVELEAFSMILWAMWNDRNFEIHNTDKIPKDDPIHKALNYLDEFKATSIKENQVRNTVDQNRGNPKATDFTSTRNIIDQKERWMAPKRNTYKVNVDASVSVNTPPKSSSLHAWIGPPVLFLSSATTTAFFHVSNPQAAESLSPASSLRVHPLPRRRPTRACNLRWAVCDSSLPLPLFCQSSHGSRNLFILGLSSSDKLDGMIPTVE

Homology

[Close]

BLAST of Spg032948 vs. ExPASy TrEMBL
Match: A0A803QDE8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 31/99 (31.31%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 52  VELEAFSMILWAMWNDRNFEIHNTDKIPKDDPIHKALNYLDEFKATSIKENQVRNTVDQN 111
           V +E F+ ILW++W +RN + H T+  P D  ++ AL+YL+EFKA       V + +D  
Sbjct: 297 VGIEQFATILWSIWMERNKQHHGTNPKPHDVILYYALSYLEEFKAARTVTLVVNSALD-- 356

Query: 112 RGNPKATDFTSTRNIIDQKERWMAPKRNTYKVNVDASVS 151
                    T + +  ++   W+ P  +  K+N DA+V+
Sbjct: 357 ---------TISTSATNRDTPWLNPPSDRLKLNTDAAVN 384

The following BLAST results are available for this feature:

BLAST of Spg032948 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032948 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803QDE8	3.0e-04	31.31	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Spg032948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032948.1	Spg032948.1	mRNA