Spg032939 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032939
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold11: 13405079 .. 13407268 (-)
RNA-Seq Expression	Spg032939
Synteny	Spg032939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAGAAGCACGAATCTGGATTTTCTGTGTTCGGGGGATTTCTGGACAAATCCGTTGGGAATCTCATTTTCATTTCTTCAGGTAAGTTGTGGAGGGTTCGAAAATGAGGAGTTTGATGTAAAGTACATTAATTGTAGTCAATTATGGAGGAAGTTATGAGTGTTTGAAGTTAGGGTATTGAATCTGGAAAATCTGGAAAAAAAAGTGTGGAATGTGATTTTAATTCTAAAGTTTAGAATTCATGAGCATAGAAAGACAAGACTATTTATAGTTCTGATGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTGAGTGACAAAACAGATTTCGAAAATGATTTCTAAACTGTTATTTATGCTTAAATGGTTTACATGCTTGAATGTGAACTTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGATATATATATGAGCACGTGATTATTGACTTTCTGAAAAGTAGTTGAAACAATATCATTTAAAGCAAAGTATGTATTAGCGAGTACTGTTTTAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGCAGGCATGTTTTAATGTTTTCAAGTGATTTTCTGAGACTTTTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCATGAGTGCTGGGCGAGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTGGGCCCCACTACATTGTAGAGCTAGTAGACGTTGGTTGTACTGGGCATGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAATGTTTTATATACTTGATATGCCTTGCTAGATTTTAATGACGTACTTGCAGAGTATTTGAGAAAGCTTTTATCATTACACGTTTATATTTCACGCTTTGACTAAACAGATTTATATGTTAAAGGTTTATCATGTGTTCTTATTTGCGGATTAACAGTTTTAAATTTAGTCACTCACTGTGCTTCATAGCTCACTCTTTCAAAATGTTTTAACACTTTCCAGATGGAGATCGAGCTCCCGGTGCCTGATAAGCTGCCAACATCTGCTAAAAGCTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTACATTGTGTCTGTTTGTTTTGTAAATGTCTTTGTAAGAATTGGATAGTTTACGGTTTGTGTAAGCTCTAGATGTTCTGGTTGTGTAAACCCTAGTTGTAGATGTTTTGGTTGTGATGTCTCTATCAGGTTATTTTTCAAACCGAGTTATGTCAGGGCTGCACTTCATGTATGTCTAAAGGTTTTCAAGGTTCCGCTGTGTTGTGTTGCATGTAAAGTGTTCCATATCTAAGATTAGCATTCTTATCAGGTTCAACAATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAGATTAGATGAACAAGTTTCAGACAATGAATGAATCTTAGCACAATAAACACAAAAGAAATTAGAGTGACAAGCCATTGATGTGATTTGTGCACTTAAGGTTGTGATGATGTATTCTTCCACATGTGGATTATTTTGAGCTATCAAACCCTTTGGCTATGCTTATCTTCTATTTTTTCTCTTTTTTTTTTTTTTTTTGTCAACAAGGGGATCGACTCCTGGTGGATCTATCAGAAGTTCTTGAGTGTAAGCAACTTCTTCAAGATGTTCTCGTGTGCTCTACTCCTGTTGCTCTTTGATGGGTCTAATTTATTATACACTTAGAATCTCCCAATTTGCTTATCTTATTTGAATTCCTTGCGAAAAATGCTTTAAAATGAGTATAATATGTCTATAGGTCCTCACCGGAGATTTGGAAGCAATTCGGGGCCTAAACGAGCAAAACTGGAGTGTAAAATCACTATTCTGCCCTTGGAGCCATCCCAGCATCGAGACCCTGCCATCCAAGTGTCTGGACACAGTTCAAATAAGGAAAATACTTGGGCGTGA

mRNA sequence

ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAGAAGCACGAATCTGGATTTTCTGTGTTCGGGGGATTTCTGGACAAATCCGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCCAAGACTATGGAGATCGAGCTCCCGGTGCCTGATAAGCTGCCAACATCTGCTAAAAGCTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTACATTGTGTTATTTTTCAAACCGAGTTATGTCAGGGCTGCACTTCATGTTCAACAATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTCCTCACCGGAGATTTGGAAGCAATTCGGGGCCTAAACGAGCAAAACTGGAGTGTAAAATCACTATTCTGCCCTTGGAGCCATCCCAGCATCGAGACCCTGCCATCCAAGTGTCTGGACACAGTTCAAATAAGGAAAATACTTGGGCGTGA

Coding sequence (CDS)

ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAGAAGCACGAATCTGGATTTTCTGTGTTCGGGGGATTTCTGGACAAATCCGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCCAAGACTATGGAGATCGAGCTCCCGGTGCCTGATAAGCTGCCAACATCTGCTAAAAGCTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTACATTGTGTTATTTTTCAAACCGAGTTATGTCAGGGCTGCACTTCATGTTCAACAATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTCCTCACCGGAGATTTGGAAGCAATTCGGGGCCTAAACGAGCAAAACTGGAGTGTAAAATCACTATTCTGCCCTTGGAGCCATCCCAGCATCGAGACCCTGCCATCCAAGTGTCTGGACACAGTTCAAATAAGGAAAATACTTGGGCGTGA

Protein sequence

MTRSRFNFRRKVEGSREARIWIFCVRGISGQIRWESHFHFFRPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAGPHRRFGSNSGPKRAKLECKITILPLEPSQHRDPAIQVSGHSSNKENTWA

Homology

[Close]

BLAST of Spg032939 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-06
Identity = 43/111 (38.74%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 43  PRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSF----QIKLQ 102
           PRGNRSSLQT EL KT                 +EIELPVPD LPTSA+SF       L+
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 103 YVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
                VH  +   +      +     +G    +  DDV WLH + R K+AG
Sbjct: 155 LYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAG 205

[Close]

BLAST of Spg032939 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-05
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 43  PRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIK----LQYVGGVVHCVIFQTELCQ 102
           PRGNR +L T +L KT+EIELPVPD LPTSA+S +      L+     VH  +   +   
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 103 GCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
              +     +G    +  DD+ WLHA+   K AG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAG 172

[Close]

BLAST of Spg032939 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-05
Identity = 42/116 (36.21%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 42  RPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKS--------F 101
           RPRGNR+SLQT EL KT                 +EIELPVPD LPTSA+S         
Sbjct: 30  RPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWL 89

Query: 102 QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
           ++  ++V  V     F  ++  G      +  G    +  D+V WLHA+   K AG
Sbjct: 90  ELNFEFV-HVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVFWAKTAG 144

[Close]

BLAST of Spg032939 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 8.8e-05
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 42  RPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSF------QIKLQYVGGVVHCVIFQTE 101
           RPRGNR SLQT +L KT+EIELP+PD LPT A+SF       ++L +    V  + + T 
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHVERLCYFTN 89

Query: 102 LCQGCTSCSTIQQGQQVSLEE 117
                     + +GQQ SLEE
Sbjct: 90  QVMSGLHLVYVGKGQQGSLEE 110

[Close]

BLAST of Spg032939 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 41/111 (36.94%), Postives = 48/111 (43.24%), Query Frame = 0


Query: 39  HFFRPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSFQIKLQ 98
           +  RPRGNR SLQT +L KT                 +EIELPVPD LPTSA+SF+   +
Sbjct: 51  YLVRPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSR 110

Query: 99  YVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
             G V                              DDV WLHA+ R K AG
Sbjct: 111 STGIV----------------------------RGDDVCWLHAVFRAKTAG 133

[Close]

BLAST of Spg032939 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 43/111 (38.74%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 43  PRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSF----QIKLQ 102
           PRGNRSSLQT EL KT                 +EIELPVPD LPTSA+SF       L+
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 103 YVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
                VH  +   +      +     +G    +  DDV WLH + R K+AG
Sbjct: 155 LYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAG 205

[Close]

BLAST of Spg032939 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 43  PRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIK----LQYVGGVVHCVIFQTELCQ 102
           PRGNR +L T +L KT+EIELPVPD LPTSA+S +      L+     VH  +   +   
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 103 GCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
              +     +G    +  DD+ WLHA+   K AG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAG 172

[Close]

BLAST of Spg032939 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 42/116 (36.21%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 42  RPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKS--------F 101
           RPRGNR+SLQT EL KT                 +EIELPVPD LPTSA+S         
Sbjct: 30  RPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWL 89

Query: 102 QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
           ++  ++V  V     F  ++  G      +  G    +  D+V WLHA+   K AG
Sbjct: 90  ELNFEFV-HVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVFWAKTAG 144

[Close]

BLAST of Spg032939 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-05
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 42  RPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSF------QIKLQYVGGVVHCVIFQTE 101
           RPRGNR SLQT +L KT+EIELP+PD LPT A+SF       ++L +    V  + + T 
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHVERLCYFTN 89

Query: 102 LCQGCTSCSTIQQGQQVSLEE 117
                     + +GQQ SLEE
Sbjct: 90  QVMSGLHLVYVGKGQQGSLEE 110

[Close]

BLAST of Spg032939 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-05
Identity = 41/111 (36.94%), Postives = 48/111 (43.24%), Query Frame = 0


Query: 39  HFFRPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSFQIKLQ 98
           +  RPRGNR SLQT +L KT                 +EIELPVPD LPTSA+SF+   +
Sbjct: 51  YLVRPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSR 110

Query: 99  YVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG 133
             G V                              DDV WLHA+ R K AG
Sbjct: 111 STGIV----------------------------RGDDVCWLHAVFRAKTAG 133

The following BLAST results are available for this feature:

BLAST of Spg032939 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067117.1	8.0e-06	38.74	hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747...	[more]
KAA0052218.1	3.0e-05	39.36	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0051980.1	5.2e-05	36.21	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0040420.1	8.8e-05	44.44	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0060199.1	1.1e-04	36.94	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]

BLAST of Spg032939 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIY9	3.9e-06	38.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UAH6	1.5e-05	39.36	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U9X4	2.5e-05	36.21	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TAS6	4.3e-05	44.44	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BAD1	5.6e-05	36.94	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg032939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032939.1	Spg032939.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity