Spg032911 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032911
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 16175659 .. 16177190 (-)
RNA-Seq Expression	Spg032911
Synteny	Spg032911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCCGTCGTGGGTCTTCCGAGATCTTGTCTGAACCCTCTCGTCGGAATCAATCGAGGAGGTATGGCGAGGGCTCCTTCGCCTCCCCAGAAGATCGCCTAAAAGCCCTAATTTCTTGTCCTTCCGCGAGTACAAAATCCGGCGAAAACGAATCAATTGAAGGAGAAATTCAAGAAATCCAGCTACTGATTGACGACAATCCTCCCCAGAAATTCAAGAAATCCAGCCACAAGGGTTCATTTCTTTGTTTTTTTTTTTTTTTAATCTGAAAACAGAGGGCTTTCTCTGTTTGTTGTTGCTTTGTGGAAGATGATGGAGTGTGAGTGGTCTCTCTGGTTCTTGTTGCTTTGTGGAAGGTGGATTTTTGTTGGAGAAGAAGGTAAGGGAAGGTTTGTTAATGAAGAAGAAAATGGGGAGGGGTGGGTTTCTTTTTCATGGTTTGTCGAGGAAAAAGAAAATGGGTGGAGGCCGATGGTGTTGTTCGGGTGAAGATGTCGTAGACTGAAAATGAGTGGAGCCTAGAAGAAGGCGACGGCGGCGGTGGCGTTGGAGGGCGACGACGGCGAGGTGGGGTGTGGTGGATTTTAGGTTTGGGTGAAGAGGAGGAAAGAGGGATTTGGTGAGGAAGAAACCAGAAGAGAAGATCGTGGATGGGGGAGAGAGGAGAGAGAGAGAAGAATAAGAAAAAAAGGGAGCGGCGATGGCGGTGGAAGCGGCGGCACCGTCGCCGGAGAAGAAGAGTAAGAAAAAAAAATAAAGAAGGAAAGAAGGGAGAGAGTTTCGGGGGTGGGGAGAGAGAGGAGAGAGAGAGTGAATTTTTTTTTAAAATAATAATAATAAATTTATATTTTAATTTAAAATAATAAAAATAATAATTATTATTATTTTAATTTTAAAAAAATAATATTTTATTTTTTAAACGTGCCACGTCAGCGCCGTTAAGAAAATTAACGGTGGAGGGACTCAATAGAAACATTTCCGAAACAGTAGGGACTTGATTGTTCGATTTTGAAACTTAGGGACCTATTGGAAACGATCCTGAAACATGAGGGACCAAAAGGGTATTTTACCCAAAAAGAAAGAAAGATGTGTGGCGTGTTTCTCAAGGTCGGTAAGCGTACGCCAACCAACTGCCCCCAAGCAGTTCTCTCCACTATTCGGCGGCGCACAGTTAAATACACGTTTGAAATGAATGGCCCCACTCCAATTCTAATTCCCACGCGCTTCCTATAAATAACCCATTTTAACCACACCTCTGTATCATCATCAAACCACAAATCTCCTTCTTCTTCTTCTTCCCTTCCATGGCAGGTCTTCAGTACAAGTTCTTCCCCACCGACTTCCTCTACCCTCGTCCGCCTTCCTCCACCGCCTCCGACGCCGCCGCCAACGTCGTCTCCGTCGTTCCCCCCAAAACCGACGATTCTACTGCCAACCCCAAGGCCTTCCATCACGCCAATAACAACAAGAAGCCTGTTCTTGAACCCATCGTCTCCCGCCGGCCCAAACGACCCGATTTCTAG

mRNA sequence

ATGGCCGCCGCCGCCGTCGTGGGTCTTCCGAGATCTTGTCTGAACCCTCTCGTCGGAATCAATCGAGGAGGTGGATTTTTGTTGGAGAAGAAGGTAAGGGAAGGTCTTCAGTACAAGTTCTTCCCCACCGACTTCCTCTACCCTCGTCCGCCTTCCTCCACCGCCTCCGACGCCGCCGCCAACGTCGTCTCCGTCGTTCCCCCCAAAACCGACGATTCTACTGCCAACCCCAAGGCCTTCCATCACGCCAATAACAACAAGAAGCCTGTTCTTGAACCCATCGTCTCCCGCCGGCCCAAACGACCCGATTTCTAG

Coding sequence (CDS)

ATGGCCGCCGCCGCCGTCGTGGGTCTTCCGAGATCTTGTCTGAACCCTCTCGTCGGAATCAATCGAGGAGGTGGATTTTTGTTGGAGAAGAAGGTAAGGGAAGGTCTTCAGTACAAGTTCTTCCCCACCGACTTCCTCTACCCTCGTCCGCCTTCCTCCACCGCCTCCGACGCCGCCGCCAACGTCGTCTCCGTCGTTCCCCCCAAAACCGACGATTCTACTGCCAACCCCAAGGCCTTCCATCACGCCAATAACAACAAGAAGCCTGTTCTTGAACCCATCGTCTCCCGCCGGCCCAAACGACCCGATTTCTAG

Protein sequence

MAAAAVVGLPRSCLNPLVGINRGGGFLLEKKVREGLQYKFFPTDFLYPRPPSSTASDAAANVVSVVPPKTDDSTANPKAFHHANNNKKPVLEPIVSRRPKRPDF

Homology

[Close]

BLAST of Spg032911 vs. NCBI nr
Match: KAG6581666.1 (putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 21  NRGGGFLLEKK---VREGLQYKFFPTDFLYPRPPSSTASDAAANVVSVVPPKTDDSTANP 80
           NR  G+ + KK   +   LQYKFFPTDFLYPRPPS   SD A N+VSVVPPK+DDS+AN 
Sbjct: 489 NRKRGYDIGKKKLIIDMRLQYKFFPTDFLYPRPPS---SDVADNIVSVVPPKSDDSSANS 548

Query: 81  KAFHHANNNKKPVLEPIVSRRP 100
           K   HANN  KP ++PIV+  P
Sbjct: 549 KGRLHANN--KPAVQPIVAPAP 565

[Close]

BLAST of Spg032911 vs. NCBI nr
Match: KGN59725.1 (hypothetical protein Csa_002570 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 48/74 (64.86%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 35  GLQYKFFPTDFLYPRPPSSTASDAAAN-VVSVVPPKTDDSTANPKAFHHANNNKKPV-LE 94
           GLQYKFFPTDFLYPRP SS  SD   N VVSVVPPK DD TA PK   H+ NNK  V +E
Sbjct: 3   GLQYKFFPTDFLYPRPSSS--SDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 62

Query: 95  PIVSRR--PKRPDF 105
           PIV  R  PK   F
Sbjct: 63  PIVISRNNPKNSTF 74

[Close]

BLAST of Spg032911 vs. NCBI nr
Match: KAA0057217.1 (hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-09
Identity = 47/76 (61.84%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 35  GLQYKFFPTDFLYPRPPSSTASDAAAN-VVSVVPPKTDDSTANPKAFHHANNNKK---PV 94
           GLQYKFFPTDFLYPRP SS  SD   N VVSVVPPK DD TA PK      NNK     V
Sbjct: 3   GLQYKFFPTDFLYPRPSSS--SDVPNNIVVSVVPPKPDDLTAKPKGPKSLTNNKAGVVVV 62

Query: 95  LEPIVSRR--PKRPDF 105
           +EPIV  R  PK  +F
Sbjct: 63  VEPIVISRNIPKSSNF 76

[Close]

BLAST of Spg032911 vs. NCBI nr
Match: KAG8646468.1 (hypothetical protein MANES_09G009400v8 [Manihot esculenta])

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-04
Identity = 31/84 (36.90%), Postives = 40/84 (47.62%), Query Frame = 0


Query: 20  INRGGGFLLEKKVREGLQYKFFPTDFLYPRPPSSTASDAAANVVSVVPPKTDDSTANPKA 79
           I R   + L +K   GLQY FFPTDF YPRPP ST +      V  +  + +D    P A
Sbjct: 9   IPRANTYHLIRKSMAGLQYHFFPTDFYYPRPPPSTTTTTTKPAVVPMQTQKEDDKKKPNA 68

Query: 80  FHHANNNKK-PVLEPIVSRRPKRP 103
                N++  P L   +S  P  P
Sbjct: 69  MQEKENSRSLPQLSCSISALPSAP 92

[Close]

BLAST of Spg032911 vs. ExPASy TrEMBL
Match: A0A0A0LCI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 48/74 (64.86%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 35  GLQYKFFPTDFLYPRPPSSTASDAAAN-VVSVVPPKTDDSTANPKAFHHANNNKKPV-LE 94
           GLQYKFFPTDFLYPRP SS  SD   N VVSVVPPK DD TA PK   H+ NNK  V +E
Sbjct: 3   GLQYKFFPTDFLYPRPSSS--SDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 62

Query: 95  PIVSRR--PKRPDF 105
           PIV  R  PK   F
Sbjct: 63  PIVISRNNPKNSTF 74

[Close]

BLAST of Spg032911 vs. ExPASy TrEMBL
Match: A0A5A7URF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00510 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 47/76 (61.84%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 35  GLQYKFFPTDFLYPRPPSSTASDAAAN-VVSVVPPKTDDSTANPKAFHHANNNKK---PV 94
           GLQYKFFPTDFLYPRP SS  SD   N VVSVVPPK DD TA PK      NNK     V
Sbjct: 3   GLQYKFFPTDFLYPRPSSS--SDVPNNIVVSVVPPKPDDLTAKPKGPKSLTNNKAGVVVV 62

Query: 95  LEPIVSRR--PKRPDF 105
           +EPIV  R  PK  +F
Sbjct: 63  VEPIVISRNIPKSSNF 76

The following BLAST results are available for this feature:

BLAST of Spg032911 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581666.1	1.7e-13	59.76	putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN59725.1	2.3e-10	64.86	hypothetical protein Csa_002570 [Cucumis sativus]	[more]
KAA0057217.1	7.5e-09	61.84	hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa]	[more]
KAG8646468.1	9.5e-04	36.90	hypothetical protein MANES_09G009400v8 [Manihot esculenta]	[more]

BLAST of Spg032911 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI2	1.1e-10	64.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1	[more]
A0A5A7URF0	3.6e-09	61.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg032911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81
None	No IPR available	PANTHER	PTHR38223	FAMILY NOT NAMED	coord: 35..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032911.1	Spg032911.1	mRNA