Spg032909 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032909
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gag/pol protein
Location	scaffold11: 13857643 .. 13864751 (-)
RNA-Seq Expression	Spg032909
Synteny	Spg032909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCACGGATATCGACCAATGCAGTAAGTCAATCCTTCACGTGTGTTCGTAACACCAGCTGGGTCAAAATTACCGTTTTACCCCTGGGTTACCTCTAGGTCCTTAAGTACCACTGATCCCTCTGATGAACAAGTTGTTTAGGTCCAACCACTAAACAGGAGTTCCCTCGGGCCAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAACCCTTAAGGGAACACACATCTACTTACCCCAATAGGGAAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGGTCTTGCCCCTGAAATGGTAGGATTATTGAGTCGCCGAGTAGGCCACTCTCACCCATACAAATCTAAGGACAATTCCTCCTGAAAGGAGTTCATAACAGACTCAGGATTGAGATTCAGTTACCTAGGTCATCCTATTGAAATAGAAACCTAAACTAGTCAATGACGTTACATCTAGTGGTTACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCATAGAATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACATAGTGTCACTAGGATAAGGTTTCCAACCTTATCCCTATACTATAGACCTTTTAGGTTGTTGCTTGGACATCGATCCCCATATGTCCCCACATACTAGTCCAAGTTCCATCTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATCACTCAAATAACGCTTTATTGAGATCGATTGATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAACTCCCACTTGAACTAAAACTCTAGTGGGCAATATACATCAACAATCAAAATTGAATGAATAATCATTGAAGTAGGAATAGTGGTTTGTATTAATACTGTATAATACATGAAAAGTACAAATACAGATAAGTATAATAAACTAGGGCATTCACAATACCCATTACACTTCTCCCACTTGCCTTAGATTATTCTATATACATATCTCGCAGACCTAGACCCTCTAGATGACCCTCGAACACTTTAGCCATGAGAGCCTTCGTAAATGGATCAGCAATATTGTGCTTAGAGGCTTCCTTCGTGACGATCACGTTCCCTCGTTGCACGATCTCTCTGATGAGATGATATTTGCGCTCTATGTGCTTGCCTCTTTTGTGACTGCAAGGTTCTTTAGAATTTGCCACTGCACCACTATTATCACAGTAAAGGGTGATTGGCAAGTTCATATTTGGAACAACTTCCAAATCCATCAAGAACTTCTGTAGCCATACAGCCTCCTTAGCTACTTCACAAGCAGCGACATATTCGGCCTCCATGGTGGAGTCTGCAATGCATCCTTGCTTGATGCTACGCTAGACTACAGCTCCCCCGTTGAGGGTAAATACTGACCCTGATGTGGATTTCCTAGAATCCTTATCAGTCTAAAAGTTAGAGTCTGTGTATCCTGTAAGGATCAAATCCTTAGAGTCATACACAAGCTGATAGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTGTATGTAACTTGAACTAGTGTGTGGGGACATACGAGGATGGATGTTCAAGTAACAACCTAAAAGGGTCTATAGTACAAGGATAAGGTTGGGTACCTTATCCTGATAACACTATGAGATACGACCCACTTTTGTATTTGATTCAGACGTATTGATCCAAAGTGTCCATGTAGTAGACATGTGAGCAGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCATGAAATAGTAAACCAATAGATATAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAGTCTTAATCCTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGTCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGAGGCTGGGGACTTGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAGGACAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCTGCCCTCTCACTGGCCCTAGAGGAACTTTCTGTTTATTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGACAGATGTAACACAGGGGTAAAACCGTAATTTGACCTAGCTGTGATTACGGACACTTGTGAAGGATTGACTTACCGGTATAAGTCTATATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACGTGATTAATGAGTTTAATCATTTAACCTCATATCATTGGAGTTTCTGATTTGTAGGTCCATTAGGTCCCCTGCTAACTCGTAAAGAGTAATTAGGAACAATTATATCTTAAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAGTGATACATTAAAATATTAAGTCTTATTTGAAATTAAACTTTATTATTATGAGAGAAATAAATATTTGAAAAAGTTCAAATATTAATATAAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTTGAAGGAGTTCAAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGTCTGAAATTAAATATATGATATTTAATTGGGTAATTAATTAATTAACTAATAGAAGGTCTGAAATTAAATATATGATATTTAATTAGTGATTAGTTAATTAAGAATTAATTATGGAAATTAATCAATTATGGAAATGATTAATCACTTATGGAAGTAATTAATCATTTATTGAAATGATTTAATCACTTATGGAAGTAATCAATCATTTATGGAAAAGATTAATCAATTATGGAATTGATTGGTTATGAAATTGATTAATTATGGAAAAGATTAAATCAGTTATTGAAATAATTGATTTTAAATGAATATTTTATTAATGGCCTTTCTCCTATAAATAGAACACTAAACCTAGGTTTTAGGTGATACAATATAAGGCCACAAGAATGCACTCTTGCATTCTCTCTAGCCTCCCTCTCATATTCTCTCAACCCAAGAACTCTAGGGATAATTTTCTCTCTAGAGTTTTTCCCATTCAAGATTAGGTAGTCCCACAACTACGTTCCTAATCTCAGAGTCATAGCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCCTATGAAATCAAGAAAGACGTTCTTCATATTTCAGAGACGACAACGACGGTATGTTTGCTTCTCCCCTTTAGAATTAGTTCTAAGGTTGTATGCTTAGCCTTAATAATTGATTTAGAATAGTTCTCTAAATTTTTTCAATGTATTGGTATTTTGGTGGAAACAAAATTAACTACAAACAGTCCCAACTACGCTTCCGCTTTATCGAAATTACGGAATTCCAAATCCTTCAATAGTCCCTTGTTCTCCGAAGATACTTGAGGATGTTTTTAACTGCAGTCCAGTGGTCTAACCCTGGATTGGACTGGTACCTGCTGACTATCCCAACTGCATAGCAAATGTCAGGCCTAGTACACAACATGACATACATAAGACTGCCCACAGCGCTGAAGCATAAGGGATCCGTCTCATATCCTCAATTTCTTGAGGTGTCTCAGGACACTGTTCCTTAGACAAATGAACTTCATGCCTGAAGGGTAGTAAACCCCTCTTGGAATTCTGCATCTTATATCTAGACAACATCTTGTCTATATATGATGCTTGAGACAGGGCTAACTTTCGGTTCTTACGATTCCTGATAATTTGAATCCCTAGAACATACTGAGCTTCACCCAAATCTTTCATTTGGAACTCAGTCGATAGCTAGTTTTTAATGTCAGCTAGATATTCTACATCATTTCCAATGAGAAGAATATCATCTACATACAACACCAGAAAAGCTACTGAACTGTTGATAATCCTATTGTAAACACAAGGCTCATCAACGTTCTGGTCAAAGCCATAAGATTTGACAGTAGTGTCAAACCTTATATTCTAAGATCTGGAAGCTTGCTTCAACCCATAAATGGATCGTCTAAGCTTGCAAACTTTTTGCTCTTGACCTTGAGCAATGAACCCCTCTAGTTGAGACATAAAGATGTTCTCATCAAGATTGTCATTCAGAAAGGCAGTCTTGACGTTCATTTGCCAAATCTCATAATCATAAAACGTGGCAATGTACAAGAGAATCCTTATCGACTTTAACATGGCAACTGGGGAGAAGGTTTCCTCATAGTCCACCCCCTCTTAACCCTTTGCCACAAGTCGAGTTTTGAAAGTCTGTACTTTCCCAGCTGCGTCTCGTTTTCTCTTGTAGATCCATTTGCACCCTATGGGTTTAACCCCTTCAGGTAGGTTTACAAGATCCCAGACTTGATTGAAGTACATAGACTCCATCTCCAGGTCCATAACTTTGACCCACTGGTCATGGTCCACATCATTCATTGCCTTTCTAAAGGTCAATGGATCCTCAACTCCATCATCAGGTATGACAGCTGAATTTTCTACTAAACCCAGATAGCGTTCAGGTTGAGTAACAACCATCCCACTACGTCGAGACATTCTCAACTGTTGTGAAGGATGGGCTTGACCAGATGTACTGGGCTCATCTACAACTCTTGTTGAAGGTCCAGTTTGTGTATTGGGCTCATCAACAACCCTTGTTGAAGGTCCAGCCTCATCAACAACTCTTGTTGATTCATTTGTAGCTTCACCAAAAAGTTCACTTAACACCATTTTACCGCGTGACTTGTGTTCTCGAACGTGGTCTTCTTCTAAGAAAGTAGCATTTGTCGAAACAAACACTTTATTTTTTGCGGATCGAAGAAGTATCCACCTCTTGTTTCTTTTGGGTAGCCTACGAATAGGCATAATTTTGAACGTGAATCCAATTTCTTTGGGTTTTCTACTAGCACATGTGCAGGGCAGCCCCAAATTCTGAAATGACGTAAACTAGCTTTACGCCCTCTCCAGAGCTCAAATGGTGTTTCAGAAACACTCTTTGAGGGAACTACATTCAAAATATAAATTGCAGTCTCTACTGCATAACCCCAAAAAGAACTAGGCAGTTGAGCATAGCTCATCATAGATCGAACCATGTCCAACAAGGTTCTGTTTCTCCTTTCAGATACACCATTCTGTTGAGGTGTACTTGGTGCTGAGAGTTGAGACGAGATTCCATGTTCTATCAAATAGTTCTGGAATTTTAAGTCCAAATACTCTCCACCTCAATCAGATTGAAGTGTTTTAATGGTCTTACCTAACAAGTTCTCAACTTCAGTCCTGTACTCCTTGAACTTTTCAAGGGCTTCAGACTTATGACTCATTAGGTATAAATAACCATACCTTGAATAATCATCTATGAAAGAGATGAAATATTCATACCCTCCTTGAGCTTTTACATTCATAGGACCATAGAGATCCGTATGTACGAGTTCTAAGGACTCCTTGGCACGATAACCTTTTCCAGTAAAAAGTCGTTTGGTCATTTTACCTTCGAGACATGACTCACACAGAGGTAAAGTACCATCTTCTAACTGGCTTAGAAGTCCGTTCTTAACCAATCTCCCAATCCTATTGAGATTTATGTGGCCAAGTCTCAAGTGTCAAAGATAGGTACTTTGAGAAACTTTCTGCCTTTTTGGTTGAGTCTCAGCTGTTTTAAACATTTCATTGTTCAAAATAGCCCTCGAATCTATTGGTCTTAAAACATACAAATTGTTCTCTATTTTTGCAGAACAGATATCAGTACCCCTTTTAGTAATGAAACCTTTCATTCACAGAAAAGGACACTGAATATCCTTGTTCTAGCAAACAAGAAATAGAAATCAAATTTCTTTTCATTTTGGGAACTATATATACATTATCTAATAACATATAGCGCTCCCTGGAGAAGAACATTTTAATATCTCCCACTGCTTTAGCTGAAATGAGCTCCCCAGTCCCAACTCTGAGAGTCATTTCCCCAACATCCAACTGTTGCCAGGAGCTCATTCCCTCAAAGGAAGAGCATACGTGATGAGTGACACCTAAATCAAGGATCCAGTCTGTATTATCATTTTCCACTATACACGTTTCAATGACCAATAAATCAATTTTATTTTCATTGAGATGTGCTAAGCAGTTTATGTCATATTCATCATGAACAATTTGAGATGAATTAGACATGTGGGCTTGAGGACCGTCCTCAGTTAAGACCAATTCCACGCAATTAATGTTTAAGTTCATTTTCTTAGTTGTATTAGAAATACCAGTTTTGTAATTGGCGTAATTCGAGGCATACAAAGAACGTTTCATGCTGAGAACAAACAAATTAACTTAATAAGTGATGTTGCATTAACCCATTACACAAAATAATAGTATTATTTTAATCCAATCAATTTAGCAAAAGTAATGATCGACCCATAGAGTAAACATTCATTTTGCAACGATACTTCAGAGGTTTAGAACAATAGCTACGGTAGGGCAATCAGTTACTTCTCCTTTGAATTGAGACAATCTCAGCCAATCCCTATTCCCAGAATAACTCATATTCCAATAGTTCTTAGCTACCGTTTTTTTTCAGTCAGGAAATTATTAACACATTAACAATTTCCCCTAAATGTGACCCTCCATTTTTCAGATCTCAGAGGTCGGCCCCAACAATGCTACCGTACGGAAGGTCAAAGTTGGAAATAGACCTAAGAAACCCTATCCATTTATGGAGTTTGCGTTGTTCTGACTCTCATGATCAAGCCCTCCGTAGGGTGATCGCTCCCAAGGCGACTCGCAGGCAGATCATGGGGATCTCACGGTGCAACCTAATGGAAGATACCGTAGGATACGTTGA

mRNA sequence

ATGTGTCCACGGATATCGACCAATGCAGTCCAACCACTAAACAGGAGTTCCCTCGGGCCAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAACCCTTAAGGGAACACACATCTACTTACCCCAATAGGGAAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGGTCTTGCCCCTGAAATGAATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACATAGTGTCACTAGGATAAGCATGGGTGAGAGTGGTCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGAGGCTGGGGACTTGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAGGACAAGTAGATGAGTGTTGTTCATTAGAGGAGCACTGGTCCATTAGGTCCCCTGCTAACTCCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCCTATGAAATCAAGAAAGACGTTCTTCATATTTCAGAGACGACAACGACGATCTCAGAGGTCGGCCCCAACAATGCTACCGTACGGAAGGGTGATCGCTCCCAAGGCGACTCGCAGGCAGATCATGGGGATCTCACGGTGCAACCTAATGGAAGATACCGTAGGATACGTTGA

Coding sequence (CDS)

ATGTGTCCACGGATATCGACCAATGCAGTCCAACCACTAAACAGGAGTTCCCTCGGGCCAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAACCCTTAAGGGAACACACATCTACTTACCCCAATAGGGAAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGGTCTTGCCCCTGAAATGAATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACATAGTGTCACTAGGATAAGCATGGGTGAGAGTGGTCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGAGGCTGGGGACTTGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAGGACAAGTAGATGAGTGTTGTTCATTAGAGGAGCACTGGTCCATTAGGTCCCCTGCTAACTCCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCCTATGAAATCAAGAAAGACGTTCTTCATATTTCAGAGACGACAACGACGATCTCAGAGGTCGGCCCCAACAATGCTACCGTACGGAAGGGTGATCGCTCCCAAGGCGACTCGCAGGCAGATCATGGGGATCTCACGGTGCAACCTAATGGAAGATACCGTAGGATACGTTGA

Protein sequence

MCPRISTNAVQPLNRSSLGPGEDDAPLFKPRNQPLREHTSTYPNRERSEFHLVLLCSQPSFGLAPEMNTPTRMSPTWMLWIIASVSDTRWVVSHSVTRISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDECCSLEEHWSIRSPANSGEDQLVVSQLLTLGPYEIKKDVLHISETTTTISEVGPNNATVRKGDRSQGDSQADHGDLTVQPNGRYRRIR

Homology

[Close]

BLAST of Spg032909 vs. NCBI nr
Match: TYK30754.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 4.1e-07
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 100 SMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDEC 145
           ++G+SGQ ADSICL FW + +   G++ TQ+GIHSFP LGQVD+C
Sbjct: 223 TLGKSGQIADSICLSFWDKTKWGVGNIITQDGIHSFPPLGQVDKC 267

[Close]

BLAST of Spg032909 vs. NCBI nr
Match: TYK08698.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-05
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQ 141
           I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG+
Sbjct: 314 ICTGESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLGR 355

[Close]

BLAST of Spg032909 vs. NCBI nr
Match: KAA0049822.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 28/41 (68.29%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG 140
           I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG
Sbjct: 314 ICTGESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLG 354

[Close]

BLAST of Spg032909 vs. NCBI nr
Match: TYK04972.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG 140
           I MGESGQ  DSICL FW +   EAG++ TQ+ IHSFP +G
Sbjct: 303 ICMGESGQITDSICLSFWDKTEWEAGNIITQDEIHSFPPVG 343

[Close]

BLAST of Spg032909 vs. NCBI nr
Match: KAA0034955.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21310.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-04
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQV 142
           I   ESGQ ADSICL FW +    AG++ TQ+GIHSFP LG +
Sbjct: 483 ICTSESGQIADSICLSFWDKTEWGAGNIITQDGIHSFPPLGSI 525

[Close]

BLAST of Spg032909 vs. ExPASy TrEMBL
Match: A0A5D3E4C4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00950 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 100 SMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDEC 145
           ++G+SGQ ADSICL FW + +   G++ TQ+GIHSFP LGQVD+C
Sbjct: 223 TLGKSGQIADSICLSFWDKTKWGVGNIITQDGIHSFPPLGQVDKC 267

[Close]

BLAST of Spg032909 vs. ExPASy TrEMBL
Match: A0A5D3CBX3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00530 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-05
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQ 141
           I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG+
Sbjct: 314 ICTGESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLGR 355

[Close]

BLAST of Spg032909 vs. ExPASy TrEMBL
Match: A0A5A7U202 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1591G00150 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-05
Identity = 28/41 (68.29%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG 140
           I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG
Sbjct: 314 ICTGESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLG 354

[Close]

BLAST of Spg032909 vs. ExPASy TrEMBL
Match: A0A5A7T0G5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00190 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-05
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQV 142
           I   ESGQ ADSICL FW +    AG++ TQ+GIHSFP LG +
Sbjct: 483 ICTSESGQIADSICLSFWDKTEWGAGNIITQDGIHSFPPLGSI 525

[Close]

BLAST of Spg032909 vs. ExPASy TrEMBL
Match: A0A5D3C1B9 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001950 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-05
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 99  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG 140
           I MGESGQ  DSICL FW +   EAG++ TQ+ IHSFP +G
Sbjct: 303 ICMGESGQITDSICLSFWDKTEWEAGNIITQDEIHSFPPVG 343

The following BLAST results are available for this feature:

BLAST of Spg032909 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30754.1	4.1e-07	60.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK08698.1	8.6e-05	66.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0049822.1	1.1e-04	68.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK04972.1	1.5e-04	60.98	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0034955.1	1.5e-04	58.14	gag/pol protein [Cucumis melo var. makuwa] >TYK21310.1 gag/pol protein [Cucumis ...	[more]

BLAST of Spg032909 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4C4	2.0e-07	60.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0095...	[more]
A0A5D3CBX3	4.1e-05	66.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7U202	5.4e-05	68.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5A7T0G5	7.1e-05	58.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G001...	[more]
A0A5D3C1B9	7.1e-05	60.98	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Spg032909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032909.1	Spg032909.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process