Spg032895 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032895
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Integrase catalytic domain-containing protein
Location	scaffold11: 13761994 .. 13765308 (-)
RNA-Seq Expression	Spg032895
Synteny	Spg032895

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGGAGCTGCGAAATAGGTGTTGGAAGGTTGCCCAGTCAGTTTTGGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCACGGACGAATCGGAGCGGTCTCGGATTTTCCAGAAATGCGGTCGCATTTCACTTTTGCCTTCCTAGAAATGTGGTCGCATTTCTGGGAAATTTCAGCTTTTCCTCTGTTTTTCTGCACAGCAACAAACTAAGTCAAATTCTCTTAAAATCAAGTCTTTTTAAGCACAAATGAGTTAAATTTGACAAAAGTAATTCTCAACACCCTAACTTATCAAATGAAGCATAATTTGAGCTCGGGAACAGTAAATTGATCACAACATACAACATTTTACCAAGAAATGAGCTAAATATAAGGGTAAAATAGGTATATTTTTTACCCTTATCAACGAGGCCTGACGTTTGTTATGCTGTAGGGATAGTCAGCAGATATCAATCAAATCCAGGGTTAGCCAACTAGGCCGCCGTTAAAGGAATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTGGTGTTTGGGGCTAAAGAGTTAGTTCTCACTGGATACACTGACTCTGACTTCCAGTTTGACAAGGATTCTAGGAAATCCACGTCAAGGTCAGTGTTCACCCTTAACGAGGGAGCTGTAGTTTGGAGAAGCATCAAACAAGGATGCATAGCGGACTCAAACATGGAGGCTGAGTATGTAGCTGCTTGTGAAGCGGCCAAGGAAGCTGTTTGGCTAAGGAAGTTCTTGACAGATTTGGAAGTGGTTCCAAACATGGACTTGCCCATTACATTATACTGTGACAACAATGGGGCTGTAGCCAATTCTAGAGAACCTCGAAGCCACAAACGAGGAAAACACATAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGAAGATGTGATCGTCACTAAGATCGCTTCGGAGCACAACATTGTTGATCCTTTTACGAAGGCTCTCACGGCTAAAGTGTTTGAGGGTCATCTAGAGTGGCTAGGTCTACGAGATATGTACATTGTGTAATCTAGGGCAAGTGGGAGATGTGTAATGGGTATAAGGATGCCCTAGTTTATTGTATTTACCATTTCCAACTTTAGATTATTTGTACATGTTTTTTCCCATTATCTTGAGTTTTAGTTCAAGTGGGAGTTTTTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTAACATTTAACCGAACATTAATAAAATGATTTATCTTGTTAGTATTGAGTAGATCTTGTCTTATTAACCCTAATCCAATAAACTGAACATCCTAGGCTGTTAGTATGAGGCTTGAACTAGTATGTAGGGACATACGGGGATCAATGTTCAAGTTATAGCCTAAAGGGTCTATAGTATATGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATTATGATACAAACGCAATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTTAACCACTAACTGTAACACCGTTAGTTCACTTGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGTCTTAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGGGTTGCCCTTTGATTAGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTCGGACCTCAAACAGGTTGTTCATTAGAGCAGCACTAGGGACTTAAGGACAAAGATGTAACCCAGGGGTAAAACTGTAATTTGACCCAGCTGGGGTACGAACACGCGTGAAGGACTGACTTGCCGTTATTGGTCGATATCCGTGGACACAGAAATATTCTCCAATGAGAAGAGTGCAGTTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAACTTGGTTAATGAGTTTAGCCAATTAGTCTTGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAAGGTCCCACTGGTAGCTCGCAAAGAGACTTGAGGCAATTAATTGTAAATTGAAAGTGTTCAATTTATTTAGGAGATTCGTATAATGTATGTCGATACATTATAATATAAAGTTTATAAAACTTTATAATATAATTTTTGAATTAATTTCAAAAATTAATTCTTGAGAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATAAATTGGATTCATATTAATTTAAATTTTAATAAAATCCCAAAGATTAAATCTGTGATATTTAATTGGTTAATTAATTAATTATGGAATTAATTAATTTTTTATTAAAATTAGATATGAATAAGATAATAGATTTGAACTTATTCATAGACCTTTTCCTATTAGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCTCTGGGGTGGAGTGAAAGACATCTCATTTATTCTCCTTCTCTCAAAGATCTCTCCTAAAAGACTCCCACCAGTCTCCTGCTTCAAGAAGTCTCAGAGAGATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCATTTTCGATCTCACAAGCAAGAAAAGGCGAATCGATCAAGGCTTCCTACGAAAGTAAGTTTCCTTTGTAAACCTTGATCACTAGGATCATCTAGATTAGATCTAGACAATTATTTAGCATGTTTATAGCCGTTGTACAGCACTTTAAACATAGTTTTATTGCTGTAATCTTTTGCAAATTGTATTGGTATTTCAAATAAAAATCAAAGACTATGAGTAGGTTCGATAATTCTTTCCGCTGCGTAGGGCTTTTATCCCTTCACTTTTGACTAGTTTATTTTGTTTGAACATGATTAAAACAGGTATTTTGATGGATCTTGGTTACGATTATTTTGAAGCTCGCTTACTATTTGATAATGCTCTGATGGATTTTTTTGAAGAAGATGAATATGAGGATGAAATTATTTTGATATTTTTTCATTTGTTAATGGAGGAATTGCATAAGGAACGATTATCTAGACGACCGTGCAGAACTTCCACCCTTAGAGGTCATGATTATGTGGTTGAGCTGCTAAATGCTAATGATACCCGATACTTTCATTGCTCTAGGATGAGAAGAGATGCATTTATAGGATTATGTGAAGAGTGA

mRNA sequence

ATGGTTGAGGAGCTGCGAAATAGGTGTTGGAAGGTTGCCCAGTCAGTTTTGGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCACGGACGAATCGGAGCGGTCTCGGATTTTCCAGAAATGCGGTCGCATTTCACTTTTGCCTTCCTAGAAATGTGGTCGCATTTCTGGGAAATTTCAGCTTTTCCTCTGGGTTGCCCTTTGATTAGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGACCTCTGGGGTGGAGTGAAAGACATCTCATTTATTCTCCTTCTCTCAAAGATCTCTCCTAAAAGACTCCCACCAGTCTCCTGCTTCAAGAAGTCTCAGAGAGATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCATTTTCGATCTCACAAGCAAGAAAAGGCGAATCGATCAAGGCTTCCTACGAAAGTATTTTGATGGATCTTGGTTACGATTATTTTGAAGCTCGCTTACTATTTGATAATGCTCTGATGGATTTTTTTGAAGAAGATGAATATGAGGATGAAATTATTTTGATATTTTTTCATTTGTTAATGGAGGAATTGCATAAGGAACGATTATCTAGACGACCGTGCAGAACTTCCACCCTTAGAGGTCATGATTATGTGGTTGAGCTGCTAAATGCTAATGATACCCGATACTTTCATTGCTCTAGGATGAGAAGAGATGCATTTATAGGATTATGTGAAGAGTGA

Coding sequence (CDS)

ATGGTTGAGGAGCTGCGAAATAGGTGTTGGAAGGTTGCCCAGTCAGTTTTGGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCACGGACGAATCGGAGCGGTCTCGGATTTTCCAGAAATGCGGTCGCATTTCACTTTTGCCTTCCTAGAAATGTGGTCGCATTTCTGGGAAATTTCAGCTTTTCCTCTGGGTTGCCCTTTGATTAGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGACCTCTGGGGTGGAGTGAAAGACATCTCATTTATTCTCCTTCTCTCAAAGATCTCTCCTAAAAGACTCCCACCAGTCTCCTGCTTCAAGAAGTCTCAGAGAGATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCATTTTCGATCTCACAAGCAAGAAAAGGCGAATCGATCAAGGCTTCCTACGAAAGTATTTTGATGGATCTTGGTTACGATTATTTTGAAGCTCGCTTACTATTTGATAATGCTCTGATGGATTTTTTTGAAGAAGATGAATATGAGGATGAAATTATTTTGATATTTTTTCATTTGTTAATGGAGGAATTGCATAAGGAACGATTATCTAGACGACCGTGCAGAACTTCCACCCTTAGAGGTCATGATTATGTGGTTGAGCTGCTAAATGCTAATGATACCCGATACTTTCATTGCTCTAGGATGAGAAGAGATGCATTTATAGGATTATGTGAAGAGTGA

Protein sequence

MVEELRNRCWKVAQSVLGSKQPVRCEEDSSTTTHGRIGAVSDFPEMRSHFTFAFLEMWSHFWEISAFPLGCPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDLWGGVKDISFILLLSKISPKRLPPVSCFKKSQRDTGVTNWWCSHKKVAAFSISQARKGESIKASYESILMDLGYDYFEARLLFDNALMDFFEEDEYEDEIILIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE

Homology

[Close]

BLAST of Spg032895 vs. NCBI nr
Match: KAF3433792.1 (hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-11
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 174 ESIKASYESILMDLGYDYFEARLLFDNALMDFFEEDEYEDEIILIFFHLLMEELHKERLS 233
           ++IK  ++ + MDLG           +  +  FE+D+ +DE+I IF +L+  E  +    
Sbjct: 519 KAIKLLHDDVYMDLG-----------DVDLSLFEDDD-DDELIFIFLYLVCNEYAQIDSL 578

Query: 234 RRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE 277
           R+PCRTS LRGHDYV+ELLN +++R + C RM +  FI  CEE
Sbjct: 579 RQPCRTSLLRGHDYVLELLNGHESRCYDCFRMDKSVFITFCEE 609

[Close]

BLAST of Spg032895 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-10
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 71  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDL 117
           CPLI   ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R++
Sbjct: 457 CPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFREI 502

[Close]

BLAST of Spg032895 vs. NCBI nr
Match: TYK05792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-09
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 71  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR 115
           CPL   GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Sbjct: 569 CPLTCTGESGQIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]

BLAST of Spg032895 vs. NCBI nr
Match: KAA0026081.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 7.6e-08
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 71  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP 112
           CPLI  GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP
Sbjct: 96  CPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLP 136

[Close]

BLAST of Spg032895 vs. NCBI nr
Match: KAF7148819.1 (hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii])

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-07
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 208 EDEYEDEIILIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRR 267
           +D+ EDE +++   L + E +   +  RPCRTS LRGHDYVVE+LN ++ R     RM+ 
Sbjct: 627 DDDSEDEEVVVLLSLALYEYYNMYIDHRPCRTSILRGHDYVVEVLNGHEDRCHQNFRMKP 686

Query: 268 DAFIGLCE 276
             FI  CE
Sbjct: 687 QVFIAFCE 694

[Close]

BLAST of Spg032895 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-10
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 71  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDL 117
           CPLI   ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R++
Sbjct: 457 CPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFREI 502

[Close]

BLAST of Spg032895 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-10
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 71  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR 115
           CPL   GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Sbjct: 569 CPLTCTGESGQIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]

BLAST of Spg032895 vs. ExPASy TrEMBL
Match: A0A5A7SPG1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 71  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP 112
           CPLI  GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP
Sbjct: 96  CPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLP 136

[Close]

BLAST of Spg032895 vs. ExPASy TrEMBL
Match: A0A396GCJ0 (Putative harbinger transposase-derived nuclease domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0334561 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 207 EEDEYEDEII--LIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSR 266
           +EDE +D+I    IF   L+ E     L + PCRTS L GH +V E+L  N TR +   R
Sbjct: 13  DEDEEDDDIFQKAIFVAALVGEYAVNHLCKEPCRTSELTGHSWVQEILQGNPTRCYEMFR 72

Query: 267 MRRDAFIGLCEE 277
           M +  F  LC E
Sbjct: 73  MEKHVFNLLCTE 84

[Close]

BLAST of Spg032895 vs. ExPASy TrEMBL
Match: A0A396J350 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0140031 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 207 EEDEYEDEII--LIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSR 266
           +EDE +D+I    IF   L+ E     L + PCRTS L GH +V E+L  N TR +   R
Sbjct: 13  DEDEEDDDIFQKAIFVAALVGEYAVNHLCKEPCRTSELTGHSWVQEILQGNPTRCYEMFR 72

Query: 267 MRRDAFIGLCEE 277
           M +  F  LC E
Sbjct: 73  MEKHVFNLLCTE 84

The following BLAST results are available for this feature:

BLAST of Spg032895 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3433792.1	2.5e-11	40.78	hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis]	[more]
KAA0047821.1	4.8e-10	71.74	uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]	[more]
TYK05792.1	1.1e-09	72.73	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0026081.1	7.6e-08	73.17	pol protein [Cucumis melo var. makuwa]	[more]
KAF7148819.1	3.8e-07	44.12	hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii]	[more]

BLAST of Spg032895 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2P4	2.3e-10	71.74	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C3J6	5.1e-10	72.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296...	[more]
A0A5A7SPG1	3.7e-08	73.17	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=...	[more]
A0A396GCJ0	5.5e-04	41.67	Putative harbinger transposase-derived nuclease domain-containing protein OS=Med...	[more]
A0A396J350	5.5e-04	41.67	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0140031 ...	[more]

BLAST of Spg032895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032895.1	Spg032895.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding