Spg032859 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032859
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	scaffold11: 13573166 .. 13578025 (+)
RNA-Seq Expression	Spg032859
Synteny	Spg032859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGACCCCAGCTGGGTACCTTGTGGAAGGGTCGCAAGTTAACTCATGATTTTTATATCATGGAATGTCAGAGGTTTGGGTTCCTGGAAAAAAAGGGCCCTCATAAAAAATTTTCTCTCCTCCCACAATCCATCTCTGGTGATTCTCCAAGAAACAAAGCTAGCCAATATTGACAAACGGATGATCAAGTCCATTTGGAACTCTAGGAATATAGCCTGGGCATCTCGTGATTCTGAAGGCGCATTCGGGGGTATTGCCATTCTATGGAATGAATCCACCTTCACTATTATAGAGGTTTTCGAAGGTATTTTTTCCCTATCCATAAACCTTTCTCTCACTGATGGCTATTCGTTTTGGATAACAGGGGTATATGGCCCAAATATCTCTCGAGAAAGGAAGATTTTTTGGCTTGAACTTGCTGATTTAGAGGCCCTCTACTCACCAAATTGGATTATCGGTGGTGATTTTAACATCACACGCTGGTCTTGGGATCAGTCTCCCCCCTCTTCAACCCCATCACGTGCCATGAGGAAATTTAACTAATTCATTGACACAGCTGCCCTACAAGACATCCCTCTATCAAATGGTAAATTCACTTGGTCTAGCTTCAGGCCAAATCCATCGATGTCGCTTATTGACAGGTTTTTTTATCACGGATAATATCTCTTCTAAATTTGGATCAGTTGTGCTTCGCAAACTGGATAGAGTCACTTCAGATCACTATCCGCTTTGCCTCACTATAGGGAAACAACGATGGGGTCCTCCTCCATACAGATTTGTCAATGCTTGGCTGTCTCATGCCTCCTTCCCTCACACTGTGGAGGCATGGTGGAAGACTAATCCCTTGACTGGATGGCCTGGACATGGATTTATCCAAAAGCTCAAAGGTCTTAAAAAGGAGCTGAAGCTATGGAACAAACAAGTTTTTGGCCAGCAATCGGAAAAAAGGAACTTTTTGGAGTTGGAACTAGTGAATATTGATAGGGCAGAAGAAAAAGGCCCTATTTCAGAAGATGATATTGTTGACCGCAAAGTGCACGGGTCGCAAGTAATATAAAACGGAAAGAATTCCGAGTATCGAATCCACAGAGAGGCGAAGCGAAAATTAAGCAAGCAAAAATCTCTTGAGCACTAAAAATAATTAGGAGAAATAATATTTAGGGAACAGTTCATGCAGCTAAAAAGAATTCAAAAATCAAAGCAATTAAAGAAAGTAATTTGATCAATCGAAAAGAATAAAATGGAGAAAGAGAGTTTTTAATGGGAAGAGGGGTCTTGAAAATCAATTATTAGCCAAACAATTGTTATAATTATCCTATCTCATTGCCCAACTAATTATAATCCTAGAATCTCCGTTAATCACATAGGTTCTCCTGTCGGTTTCCCCTAATTGTAATTAATTCATTTTAACAACCTAAGTGTCCTTAGCGCTATTAAAAATCATTAATTATTACGCTCTGATTCATTTTAGGAATCTACGTTTATTCAACTAATCCCGGTGTCACGACGGGCAATTAAACTAGTTGCATGGATTATGATCTATCCTAACTTCTCTCCGTCGAGTTTCCATTAAGAATCGAATCATTACACAATTGGCCAGATTGAATAAAGCATTTAGCACATCCATACAAATAATTAGGACAAAAGGGCAAGAGACAGGTAATTATAACGACATTTGAATTATAATTTCATTTCAAGACCCCAAATTGGGGTTTAGCTATACATAGCTAAAATATCCACAACATTTACAATAGAAAGCATAATTAAGAGCATAAAAGGAAAGGAATTGACCGTCGAAGAACCCCTTCGCTGACGCTCAGAGCTCCGCCGAACACTCCTTGAGCCTCCTAGGAGTCTCCCCAAAATTCCCCAAATATTTCCCACTAAGAAATCTCTCAAAAAGGCTAGAAAGCCTTGAGAGAGGCTCCAAAGGAGCCAAAGGAAGGAAAGGATGGATTGAAGAATGATTTGATTGATGCTAAAATGAGGCACCAAGAGGTGCCTTTTATAGGCCCGGATTGGGGGTAGCGTCGCGACGCTACATTGCACAGCGTCGCGACGCTGCAACGCACGCGTCTTGTTGCCCAAGAAATGGGTAGCGTCACGACGCTACCTTCACAGCGTCTCAACGCTGACTCAATTTCCAGAATTTCCCAGCTCGGTTTGGGCTGATTTTTGGGCCTTCTCTTCACTTCTTTTTGGGCTTTTTCATCATGATTGGCCTCCTTGGATCCCCTTTTGATCCAAGCTTGGATTTGGGCTTGATTGGCTTCGTTTTTGGCACTTTTTCTCCCAAAATCACCGACTTTGCTCCTGAGGACCAAATAACAGAATACATTAAATATTTTCATTAATAACACGATTAAAGCATAGAAAAGCCTAATAAATTGGGACTAAAATAGCGACATTTCTGCTCGCTATCAGATATTCACAGAAGGGTCCAGATAAAGGCTAATCTCATAGCGGAAACCGAGGAGATTTTATGGCTCCAAAGATGTAAGTTAAAATGGTTTAAGGAAGGGGACTTAAACACATCCTTTTTTCACAGAATTATGGCCATCAACAGAAGAAAGAGTACCATCACAAAAATTCTATCAGCCACCAGAAACAGTCTTACCAATGATGAGGACATAGAGAAGGAATTCATTGCTTTTTACAAAAAGCTTTTCACTAAACAGAACAATAGAACCCCTCTGCCTAATATCAGTGATTGGAACCCCATATCCCTGGACCAGCAAGCTGCCTTAGAAACCCCTTTTACTGAGGCTGAAATCTTCAAGGCAGTACAAGATTTGGGCTTGAATAAAACACCTGGCCCAAACGGATTCACGGCCGAATTCTTCAAAAAATCATGGAACACCCTCAAAGACGACATAAAGGGAGTGTTCAATGATTTTTTTAAGAGCGAAATCATCAATGCTAGCCTCAACGAGACCTACATCTGCCTCATCCCTAAAAAGATTGGTGCTAAAACAGTGGGGGAATATAGACCAATCAGTTTGACTACCTGTCTTTACAAAGTTATTGCTCGGGTCCTCTCAGAGCGCCTTAAAAGAGTCCTTCCAGCCACTATAACTCCTTTCCAATCAGCCTTCGTGGGGAATAGACAGATTTTGGATGCCTCCCTTATTGCCAGTGAATTAATTGATGAATGCAATAGGAGAAAGAGACAAGGGGTGGTCATCAAGCTTGATATAGAGAAAGCCTTTGACATTGTTGACTGGGAATTTCTTGATGAGGTATTAATAGCTAAAGGCTTCGGTCATCTATGGAGGAAATGGATTTGGGGATGCATCTCTTCAGCTAATTACTCTATTCTTATTAATGGCAAACCTATAGGTAAAATCATTGCTTCTAGAGGTCTCAGATAGGGAGATCCCCTCTCTCCCTTCCTTTTCATTATCGTAGTTGATTGCCTCAATAGGATGTTATTATCGGCTGAAAAAATTGGCTCCATCGAAGGTTTCTGGGTCGGTTATAACCCTCGGACAGTGACTATCACCCACCTACAGTTTGCCGACGATACCATCCTTTTCTCCTCACCAAAACAGGATCATATTGTGAATCTTTACAAGGCTATTTGTTCTTTTGAGGTTGTTTCTTGACTGGAAATTAACAGACAAAAGACAGAATTTCTGAGCATTGGCATTGACCCTCAACAAGCATCTCTATTGGCCACCGTTTTTGGTTGCAAGATTGGCTCTTGGCCGATCTCCTATTTAGGCCTCCCTCTCAATGGCAACCCGAGGAAAACCAGCTTTTGGACCCCTGTTATTGAAAAGATTCAGCGAAGATTGCACTCTTGGGGATCACACAACATTTCCAAAGGTGGAAGACATACCCTTATTGTTGACCGCAAAGTGCACGGGTCGCAAGTAATATAAAACGGTAGGTAATACCGAGTATCGAATCCTCAGGGAATTTGAATTATATTCATTAAGTACCAAGAACCATCATGTTCAATTTTATTTAGAATTCCAACTCGAATGATAGAGCGAAAAATTAAAGAAACTAATCAAAGAAACATGCAAGTAAAAGGGAATTATCCAATTAAGGGGGCTTGACCTCGGGTGTTAACTAGCTTTTGGATATGTAGCTCAATTACATGGATGTATGTAACTAATAATCTTCAATTTCATAAATCTAGAAGTAATTATAAGCGGATTTCTCTTTCAAGCTCCTCCACATCTCATACTAACATAACTAATTCATGTGTTCACTCTCGTGCTCCAAGCAATTGTTAGCCATGCAATTAGGATCTAATCTAATTTCTCTCTGTCGAGTATCAATTTAGACCAACAAATCAATCAATCCGTGATCAAGAGATTAAAGGCATTAAGCATAAATTGCATAGATGAAATATGAAGAAATTCATTACGTAATAAAAGTAATTGTGCTACAATATCCAATTAACTAGAATAACGACCCTAGGTCTCAAGATCTACTCACACATAGAAATAATTTTGCCAAAATGATCTTGATCCATAGGCCTAACTATAATTACAATAAGGAATTATAAAGAAGTAAGGAAGAAATAACCGATAAGTTGATCCCAAGCTCCAGTCACGAGCATCTCAAATCCCGAGCCTTGGAATCTCGCTCAATTCCTCCTTTTTCCTCACAATTCTTCTCACTTTTTCTCTCTATTGAGCTAGGGGAGAGCTCCCCAAAAATGGGATGATTTTCACCTTTGGGAATGGGGCTATTTATAGGAGCAGAAACGGACCTTTCTTGCTGCCCAAGACGCACAGCGTCGAGACGCTACGTCACAGCGTCGTCAGGTTTTCTTGGAGCAGAAGTTGTCGCAGCGTCGCGACGCTACCGCGATTCTGGAATTTTCTTCGCTGCTTGCCTAG

mRNA sequence

ATGACAAGACCCCAGCTGGGTACCTTGTGGAAGGGTCGCAAGTTAACTCATGATTTTTATATCATGGAATGTCAGAGGAATATAGCCTGGGCATCTCGTGATTCTGAAGGCGCATTCGGGGGTATTGCCATTCTATGGAATGAATCCACCTTCACTATTATAGAGGTTTTCGAAGTTGTGCTTCGCAAACTGGATAGAGTCACTTCAGATCACTATCCGCTTTGCCTCACTATAGGGAAACAACGATGGGGTCCTCCTCCATACAGATTTGTCAATGCTTGGCTGTCTCATGCCTCCTTCCCTCACACTGTGGAGGCATGGTGGAAGACTAATCCCTTGACTGGATGGCCTGGACATGGATTTATCCAAAAGCTCAAAGGTCTTAAAAAGGAGCTGAAGCTATGGAACAAACAAGTTTTTGGCCAGCAATCGGAAAAAAGGAACTTTTTGGAGTTGGAACTAGTGAATATTGATAGGGCAGAAGAAAAAGGCCCTATTTCAGAAGATGATATTGTTGACCGCAAAGTGCACGGGTCGCAAAAAGCCTTGAGAGAGGCTCCAAAGGAGCCAAAGGAAGGAAAGGATGGATTGAAGAATGATTTGATTGATGCTAAAATGAGGCACCAAGAGATAAAGGCTAATCTCATAGCGGAAACCGAGGAGATTTTATGGCTCCAAAGATAA

Coding sequence (CDS)

ATGACAAGACCCCAGCTGGGTACCTTGTGGAAGGGTCGCAAGTTAACTCATGATTTTTATATCATGGAATGTCAGAGGAATATAGCCTGGGCATCTCGTGATTCTGAAGGCGCATTCGGGGGTATTGCCATTCTATGGAATGAATCCACCTTCACTATTATAGAGGTTTTCGAAGTTGTGCTTCGCAAACTGGATAGAGTCACTTCAGATCACTATCCGCTTTGCCTCACTATAGGGAAACAACGATGGGGTCCTCCTCCATACAGATTTGTCAATGCTTGGCTGTCTCATGCCTCCTTCCCTCACACTGTGGAGGCATGGTGGAAGACTAATCCCTTGACTGGATGGCCTGGACATGGATTTATCCAAAAGCTCAAAGGTCTTAAAAAGGAGCTGAAGCTATGGAACAAACAAGTTTTTGGCCAGCAATCGGAAAAAAGGAACTTTTTGGAGTTGGAACTAGTGAATATTGATAGGGCAGAAGAAAAAGGCCCTATTTCAGAAGATGATATTGTTGACCGCAAAGTGCACGGGTCGCAAAAAGCCTTGAGAGAGGCTCCAAAGGAGCCAAAGGAAGGAAAGGATGGATTGAAGAATGATTTGATTGATGCTAAAATGAGGCACCAAGAGATAAAGGCTAATCTCATAGCGGAAACCGAGGAGATTTTATGGCTCCAAAGATAA

Protein sequence

MTRPQLGTLWKGRKLTHDFYIMECQRNIAWASRDSEGAFGGIAILWNESTFTIIEVFEVVLRKLDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQKLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDRKVHGSQKALREAPKEPKEGKDGLKNDLIDAKMRHQEIKANLIAETEEILWLQR

Homology

[Close]

BLAST of Spg032859 vs. NCBI nr
Match: RVW94282.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-21
Identity = 58/162 (35.80%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 26  RNIAWASRDSEGAFGGIAILWNESTFTIIEVFEVVLR--------------------KLD 85
           RN  WA+  + GA GGI I+W+    +  EV  V  R                     L 
Sbjct: 248 RNKEWAALPTCGASGGILIIWDSKKLSSEEVSSVCKRLDWFLYSNEWELFFPQSLQEVLL 307

Query: 86  RVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQKL 145
           R TSDH+P+ L     +WGP P+RF N WL + SF     +WW+     GW GH F++KL
Sbjct: 308 RWTSDHWPIVLDTNPFKWGPTPFRFENMWLQYPSFKECFSSWWREFEGNGWEGHRFMRKL 367

Query: 146 KGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPIS 168
           + +K +LK WNK  FG   E++  +  E+ NID  +++G +S
Sbjct: 368 QFIKAKLKYWNKNTFGMLKERKKSILDEISNIDAIKQEGVLS 409

[Close]

BLAST of Spg032859 vs. NCBI nr
Match: RVW44240.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 60  VLRKLDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGH 119
           V R L R TSDH+P+ L     +WGP P+RF N WL H SF  +  +WW+     GW GH
Sbjct: 10  VSRVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLHHPSFKESFGSWWREFQGDGWEGH 69

Query: 120 GFIQKLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDRKV 177
            F++KL+ LK +LK WNK  FG   E++  + L++ N D  E++G +S + ++ R V
Sbjct: 70  KFMRKLQFLKAKLKEWNKNAFGDLIERKKCILLDIANFDSMEQEGGLSPELLIQRAV 126

[Close]

BLAST of Spg032859 vs. NCBI nr
Match: RVX09324.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-20
Identity = 62/217 (28.57%), Postives = 94/217 (43.32%), Query Frame = 0


Query: 6   LGTLWKGRKLTHDFYIMECQRNIAWASRDSEGAFGGIAILWNESTF----TIIEVFEVVL 65
           + ++WKG++             + WA+  + GA GGI ILW+ S F     ++  F V +
Sbjct: 15  VSSVWKGKR-------------VEWAALPACGASGGIVILWDSSKFECTEKVLGSFSVTV 74

Query: 66  R--------------------------------------------KLDRVTSDHYPLCLT 125
           +                                             L R TSDH P+CL 
Sbjct: 75  KFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGLTFPRCFQEALPRWTSDHSPICLE 134

Query: 126 IGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQKLKGLKKELKLWNK 175
               +WGP P+RF N WL H  F      WW+     GW GH F++KLK +K +LK WN 
Sbjct: 135 TNPLKWGPTPFRFENMWLLHPEFKEKFRVWWQECTGEGWEGHKFMRKLKFVKSKLKEWNI 194

[Close]

BLAST of Spg032859 vs. NCBI nr
Match: RVW99725.1 (DNA repair protein RAD50 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-20
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 64  LDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQ 123
           L R TSDH+P+ L     +WGP P+RF N WL H +F  +  +WW+     GW GH F++
Sbjct: 139 LPRWTSDHWPIVLDTNPFKWGPTPFRFENMWLQHYNFKESFSSWWREFEGNGWEGHKFMR 198

Query: 124 KLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDRKV 177
           KL+ +K +LK WNK  FG   E++  +  E+ NID  E++G +S D +  R +
Sbjct: 199 KLQFVKAKLKDWNKNTFGMLKERKKTISDEIANIDAIEQEGALSSDLVAQRAI 251

[Close]

BLAST of Spg032859 vs. NCBI nr
Match: RVW98412.1 (hypothetical protein CK203_026853 [Vitis vinifera])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 57  FEVVLRKLDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGW 116
           F+  +R L R TSDH+P+ L     +WGP P+RF N WL H SF      WW+     GW
Sbjct: 764 FDDFIRVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWREFQGNGW 823

Query: 117 PGHGFIQKLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDR 175
            GH F++KL+ +K +LK WNK  FG+ S+++  +  +LVN D  E++G +S + +  R
Sbjct: 824 EGHKFMRKLQFVKAKLKEWNKASFGELSKRKEDILSDLVNFDSLEQEGGLSHELLAQR 881

[Close]

BLAST of Spg032859 vs. ExPASy TrEMBL
Match: A0A438IC57 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_209 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 58/162 (35.80%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 26  RNIAWASRDSEGAFGGIAILWNESTFTIIEVFEVVLR--------------------KLD 85
           RN  WA+  + GA GGI I+W+    +  EV  V  R                     L 
Sbjct: 248 RNKEWAALPTCGASGGILIIWDSKKLSSEEVSSVCKRLDWFLYSNEWELFFPQSLQEVLL 307

Query: 86  RVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQKL 145
           R TSDH+P+ L     +WGP P+RF N WL + SF     +WW+     GW GH F++KL
Sbjct: 308 RWTSDHWPIVLDTNPFKWGPTPFRFENMWLQYPSFKECFSSWWREFEGNGWEGHRFMRKL 367

Query: 146 KGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPIS 168
           + +K +LK WNK  FG   E++  +  E+ NID  +++G +S
Sbjct: 368 QFIKAKLKYWNKNTFGMLKERKKSILDEISNIDAIKQEGVLS 409

[Close]

BLAST of Spg032859 vs. ExPASy TrEMBL
Match: A0A438E9G3 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_647 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 60  VLRKLDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGH 119
           V R L R TSDH+P+ L     +WGP P+RF N WL H SF  +  +WW+     GW GH
Sbjct: 10  VSRVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLHHPSFKESFGSWWREFQGDGWEGH 69

Query: 120 GFIQKLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDRKV 177
            F++KL+ LK +LK WNK  FG   E++  + L++ N D  E++G +S + ++ R V
Sbjct: 70  KFMRKLQFLKAKLKEWNKNAFGDLIERKKCILLDIANFDSMEQEGGLSPELLIQRAV 126

[Close]

BLAST of Spg032859 vs. ExPASy TrEMBL
Match: A0A438JK46 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_207 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 62/217 (28.57%), Postives = 94/217 (43.32%), Query Frame = 0


Query: 6   LGTLWKGRKLTHDFYIMECQRNIAWASRDSEGAFGGIAILWNESTF----TIIEVFEVVL 65
           + ++WKG++             + WA+  + GA GGI ILW+ S F     ++  F V +
Sbjct: 15  VSSVWKGKR-------------VEWAALPACGASGGIVILWDSSKFECTEKVLGSFSVTV 74

Query: 66  R--------------------------------------------KLDRVTSDHYPLCLT 125
           +                                             L R TSDH P+CL 
Sbjct: 75  KFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGLTFPRCFQEALPRWTSDHSPICLE 134

Query: 126 IGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQKLKGLKKELKLWNK 175
               +WGP P+RF N WL H  F      WW+     GW GH F++KLK +K +LK WN 
Sbjct: 135 TNPLKWGPTPFRFENMWLLHPEFKEKFRVWWQECTGEGWEGHKFMRKLKFVKSKLKEWNI 194

[Close]

BLAST of Spg032859 vs. ExPASy TrEMBL
Match: A0A438ISX9 (DNA repair protein RAD50 OS=Vitis vinifera OX=29760 GN=RAD50_6 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-20
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 64  LDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGWPGHGFIQ 123
           L R TSDH+P+ L     +WGP P+RF N WL H +F  +  +WW+     GW GH F++
Sbjct: 139 LPRWTSDHWPIVLDTNPFKWGPTPFRFENMWLQHYNFKESFSSWWREFEGNGWEGHKFMR 198

Query: 124 KLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDRKV 177
           KL+ +K +LK WNK  FG   E++  +  E+ NID  E++G +S D +  R +
Sbjct: 199 KLQFVKAKLKDWNKNTFGMLKERKKTISDEIANIDAIEQEGALSSDLVAQRAI 251

[Close]

BLAST of Spg032859 vs. ExPASy TrEMBL
Match: A0A438INW7 (DUF4283 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_026853 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 57  FEVVLRKLDRVTSDHYPLCLTIGKQRWGPPPYRFVNAWLSHASFPHTVEAWWKTNPLTGW 116
           F+  +R L R TSDH+P+ L     +WGP P+RF N WL H SF      WW+     GW
Sbjct: 764 FDDFIRVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWREFQGNGW 823

Query: 117 PGHGFIQKLKGLKKELKLWNKQVFGQQSEKRNFLELELVNIDRAEEKGPISEDDIVDR 175
            GH F++KL+ +K +LK WNK  FG+ S+++  +  +LVN D  E++G +S + +  R
Sbjct: 824 EGHKFMRKLQFVKAKLKEWNKASFGELSKRKEDILSDLVNFDSLEQEGGLSHELLAQR 881

The following BLAST results are available for this feature:

BLAST of Spg032859 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW94282.1	2.2e-21	35.80	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW44240.1	3.2e-20	41.88	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVX09324.1	4.2e-20	28.57	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW99725.1	5.4e-20	40.71	DNA repair protein RAD50 [Vitis vinifera]	[more]
RVW98412.1	1.2e-19	40.68	hypothetical protein CK203_026853 [Vitis vinifera]	[more]

BLAST of Spg032859 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438IC57	1.1e-21	35.80	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438E9G3	1.5e-20	41.88	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438JK46	2.0e-20	28.57	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438ISX9	2.6e-20	40.71	DNA repair protein RAD50 OS=Vitis vinifera OX=29760 GN=RAD50_6 PE=4 SV=1	[more]
A0A438INW7	5.9e-20	40.68	DUF4283 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_026853 PE=...	[more]

BLAST of Spg032859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 194..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..199
None	No IPR available	PANTHER	PTHR33710:SF28	SUBFAMILY NOT NAMED	coord: 58..177
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 58..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032859.1	Spg032859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process