Spg032850 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032850
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	tRNA_int_end_N2 domain-containing protein
Location	scaffold11: 13082054 .. 13092729 (-)
RNA-Seq Expression	Spg032850
Synteny	Spg032850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGCCTCGGCCTAGGCCGACCACTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCCGCTCGGTCCCTCCTGCTTCTGGCCGCCCCGGTTCCGCCTGGTTTGTCCCGAAACGCCTCTGAATTCCTAAAAACCCTAGGAGCATGAGCAGGTATTTATACCCCTCTTCGCCACTGAAGAAGGAGACCCGAACTCTCGACTCTCTCCTCTTACTCTCTTGCTCTCTTCTTCCGTTTTCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCATGTTTACTCTTTTGCTGGCCTTCCCCCGCTCTCAAACAAATTCACTCTCGATTATCACGTGGAGCGAAGGTAATTTACCTAGAGAAATTTGATCATCAACAATTATTACAATGATTATAGATTATAGATTATATAATCAATAATTCAGTTGTTTCATTTGTCTCTCTTTTTCATTTTCATTTTTCGTGGTAGACGGTTTTTTTTTTTTTTTTTTGAGAGGATTTTCGTGGTAGACGGTTTTTGTAATGTAACGTTCCGAATTTTCAAATAAAATCCTTCTCAAGTCTTAAGTTAATTATAAATTTAAATATTTTTGTTTAAATTATTATTGGTATTAAAATATATATAGAAATTCTTGAATTTTAGTATTTAATTTAGATTTTGAAATCAATTTAGTGCCTAATTAAATAAATGAGTAAGTAAATAAAGAAAAAAAAAGGGGATTTAATGTTCTCCTTCTTCTCAGCCGGCAGTTCACGATATCCCCTCTCCCTTCACTCTCGTTTTTCCTCTCTCCTTCAGCCGCCTCTCCCTCTCTCACGCTCGCCTTCAGTCACCAACTCGCCGGCCTCTCTCCCTCTGCTTTGTGGCGTCGACGGCGATCCTCCGATAGAAGTGAAGCTCCAGCCGCCGCCGTAGTTACAGTTCGCAGCCACGTAGCCTGCTGCCGCCGCCCTTACAGCCGTCGGTCTGAATCTTCGTCCAAGCACCTCGAGCCGCAGAAGCCGTGTTCGCTTTGGGTGCTTATTTAGGTGAGTTTTAATTAGATTCTTGGTCCGATTGAAGGTTTAGTTGTTTTCTTAAGAAGTGAAATCAACCCATATGTTTCTCGAACAGCTTTCAGACTATGTGGTTTTCTCTGGCATTTAAATTCAGGATTTAGCGTTGTTTAAGTTGCTGTCCAGTGAGGGGTTGGAGCATTTGGGTGAGTTTTCTTATACGTTTGAGTGCCAATTAGAATATTTTTGTTAATTGGAGTTGACCCATTCCTTATTGGACTCGTTTTAGAGTTACCCATCCAATTTCGAGTTCATAATTGCAGATTTTCGCTCATTCGAAGTACTGTCCAGCAAGCTTTTGAGTCGTTTCAACTGGATTTTTGTAGGTAAGAGTTGTACTAGACTTTCTCTATTATGTAAGTGAAGTCTTTGAAGTTTAAGGAAAGGATTGATTAGGCAAATTTCTTGGTTTCAAATCTATCTTGCCAAGAGGAGTATTTATTTTCTAGAAAATTATTTTTGTAGGTTGGATGAGGAGGATTAAGCGATTTGATTATTTTAACTCATAAGCCAGGTAAGCGGCTTTATTGTTGAAAATTTTCTAAACTTCATGTGTTTCATGAGTTGTTTTAATATGTATATGTTTATGCTAAATTGTTAAAGTATGAAAGTTATTATGGACCGTCTGCATATGTTGAGTTTTTTTTGAAATTTTCTAAATTGGTGGTATCTTGAAAATTTCGTATTATGTATGAGTTTAAATGTCCTTTGAGTTTTTTTTCTTAGATTCCGAAAGGGTACATGAAATTGATGTACTTCAAGAGGTGCCTACACAAGACTTAGGACATGAAATTGATGTACTTGAGTCGAGGTTCGTGGAATTGACGTTCCCCCATAGGAGGCACATGAAATTGATGTGTCTAAGATATACATGAAATTGATGTATATCCCATTAATTAAGAAGTTTACAGAGGGAAAATAGCCACCAAAGGCACATCGGGTGATTGATCGAGCTTGCTGAAATAGCCATGGGGGTCTAGAGAGCATTGTTTTCGTTGTTTAAGCTTCCGCACTCAAAGTTATATTTTAGATTTCTTATTTGATTTATGCTTGACTTCATACTTTAGAGGCCGTGAAAAGTATTTCAAGTTTTGTGACTTTGTTTTGATCCTGGGATCCTGTTTATCTTTTGTTTTTGAGGTGTTGTTTACTTCATTTTTATTTTGAAATATAAATGTTCTTTAAATTCTTGTGGGCTTCCATAACATGCATGAGTATTGAACCCAATTTGTTGTTGTTAGAGTCGGGTTCTTACATCTAACTTAAATCTCTGACAAATTTCTCCCTCTTGCGGTTCTACCCCAGCTTCTTCCTTATTCCGGCATAAGAAAGAGAAGATAATCGTAATTGTCTTGTTGAATAAACTATTACCAAATGAAATTTCAGAATTATGAGTCATGTTACATTAATATTTAGCAATTTTAGTAGTTTTCGGTTGTTATCTCCACGTTTTACATAGTTCGATACCATGTCCATTCCCTGAGGAGTTTTGATATTTGAGTAGGAGTTCTCTGATGGAGGCTAGAGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACATTTACGAGCAAGACATGAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACATGCGCAAGTTGCAATTTAGGTTGAGAATTTAAAGAATTTAGACTCCTCCAAATCCTTCAATAGGAGGATGCTATTTGCTTGTTATTAGTAAGTGTGAGTTTCAATATTTTATCTGTCTCCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGTAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGATTTTATTATGGTTTTGTTATCCTCACTGTTTTTGACATCGATCATCACATATTTTGGGGAGTTATTCTCTTTCACATTGTCTTAATGTGGTTACTATAGAATAGGGTAATATCATGAAAAAGAAAAGAAATTCGAAGTGTACTCAGAAGCACTAGCCTTTTGTTGTCTTTTTGGGGCAATTACCTTGGTTGCCTTTCAGTCAGTTTTTTTTTTCCTCGCATTTTGGTCGTCTTTTGGGGCTTCATTTAGAACATTACATTATATGAAGGGAAGGAATTCAAACTCACAATGTACTCGGAAGCACTAGCCTTTTGTTGTCTTGGTAAAGAAATGGAATAATCATTTTAAGTACCTTTTAAGTAAGTTTTTTTTTTCCCTATCATTCTCTCTTGAAAATAAGTAGCATCAATGAAATTTTATTAAGCTTATTTGTGTCCAACTCTATGATTCATTTTATGTATCACTTATTTTTCTTTCTATTTACAATATATATACATCTATTGTTTACTTCACTTGGGCAATGTTTTTCTTAATCTCTTGTTTTAGGAAAGTTAGAAGTACGTTGCCTTAAAGTGTGCCTTGGGCTTTGTAAATGTTGATTGTAATATGAACCTCTGCTGAAAAACAGAGTTATACTATTTGAGCAGAAAATAGCCTTCTACTTTTTTTGTTTTGTTTTTTTAAAATAGAGATATTAAGGATCATATTCTCTTTTCTGACATTCAGATGGCAATTTTTATGCATGCTATCAAACATTCTTTTCTATGTTTTCAGGTTTCTTATTGAAGTTGGGGCCTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAAGGAAAGAGCGGATGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGCATAAAGTTCCTTGGTCTGTGAAGAGTGTTAGGAATAGCAGTGAAATTTCTTCTCGAAGTTCTATTGAAAACAAAGGAGCGTCAGATCTTGAATCAGAAGATGAGAGGTCGATCTCCGAACTATTGGATGCCATTCAGCTTGGTGAAGTGACACCCATTTTTGATGTTTTTCTTCCACATAGCAAGTTTAGAAAGTCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTTATCAAAAGTCCATGCAACTTCCTTCCAAGACTGTCTGGTCAGGTTATTTGTTTGAATACTTTTTTTGTTTTCTGTTTTTTTTTTTTTGGTTTTTTTAGTTTCTATAAACACTTGGTAAGGCATAATTAAAAGTGACTTGCACCTGACCAACTTTAATTCTGTAACGAGAGGACAATAGTTTTGACCATAAGATAGTGAGTGCACCATATCATTTGTGTTCAAAGTTTTGTAAACTGCACTTGCAGTCTTGTTTGGAATGACTTTCTAAGTGTTTGTTAGTATTTAGAAACAAACATGTAAACACTCGGAAAGTCATTACAAACATGCCATTAGTGTGTGTTTGGCCTTGTTTTTAAAGTGAATATGTAGTATGAAATCGTTTTTTTTAAAGAAATTTAGTTAAATGCTTCCTCTATAAGCACTGTAGGTGTATTTTTTTTTTTTTTTTTTTTTTTTTATCTACTTTTAGAATTCTAAAACTACTTTTTATAAAATACTTTTAATTGGTCAAAAACGCTTTTTACTGCTCTAAAATTTTAACCAAAAGCCTACCAATTTTTTAAACAGCACTTTCAGTCATCCACAAGGACTTTAAAAGGCATAAACAAACACTTTGACTTAGATTAGTAATCAATCCTATAGTTACTAAATTGTTTACGCCATGTATCAACTTTATTTTTAGCCTTCTGTGACCCATTCAGTTGCATTCTTGAAATAACACCAATATGAGGTCAATAGTAGGCTTCTAACTCGCGTCGTTTCTTTCTTCTGGGAGATTCTATGCACTACTTAGAATTTATCTGATCCTTTAATTACTGTGGTATAATTTTTTTTTATAGGGGATATCCACCTCCAAAAAAAGATATTGAAGTCCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTCCCCGTTTTACCCTGACATTGTTGTGGATTGCTCTGCCATTGAAATATTTTATGTTTCCAGATGTGTAGAATATAGTGAATCCAGAGAAAGTGTTTGGTGTGCAATTTGATAACTTGAAAAGTACTATTCTTAAATCTGACTTTATGCGTCGTTTCCAATATTTTCAGATTTTAAATTGGGAAAATTGAAAACATGAGATCAATTTTAATGAAAAAGTGAATTCTACCTCCCAACTTTGGAAAGAAGGCGGTGGGTTTTTTTAACCTGAGTTACAATCGGGGGTTCTTCTCTTCTTATTCCATTCCCTTGTATTCACCGTCCATTACAATTAGATACTACTAGTTCATTCTATTAACAGCCTTTCTTTTATTTTCTTTTTTGTTTAGTTCAACAATGGAGATGGATGATTTGAACTTCTGATATTTTGGTTGAAGATATATGATAGAAACTGGATACTCGCTTTATTTGATTAGTTCAAGGATACAAGTCAAGAGGAGAATTCGAGAGCTCTCCTATCTCTCCCAAAACTAGACTCAAGTCAGTTACTAGTCAAAAGCCACCCAAATCAAAATACATTTCAGCTTAGTATATTCTATTTACAATACTAAAGTGGTCCCCACACTTAACCACATCCTAGCAGACTTTACCCACTCTTATCCTTTCTAACTCTCTTTCTCTTGTAAACATACTTAATAACGTCTATCAATATATGCCATTTGTTAGGAACAACTGAACACCCACATATCTTCATAATGATATGATATTGTCCATTATGAGTGTAAGTCTTCATGGCTTTGCTTTTGGTTTCACCCAAAAGACCACATACCAATGGAAATATTTGTCCTCCTTTATATATCCATGATCATCTCCTTATTTAGTCAATGTGTGACTTTGGTTGCACTCTTCAATTTCCAACGATTAACCAATTGAATTGTGTCTAGTTTTTAAAAAAATTAGAAAACCAGGTAAAGAAGTTTCTTTGTTCATTCTATTTTCATGCATTTTTAGCCTTCCCTTCTGTTTCAAGCATAGATTTTAGTAGTCCTCCATCTTCAACGGTTAACAAAATTATTCCAAGTAAGAGAGGTTGGTTAGAGATTGCTGCCCACATGCGCCCGCATCTCACCCTTTTGTTTGTGCTCGCATCTTATCCATTTTGACACTTAACATTTTGCATCAAATTCAACAAATATTCAACTCTTTTTCTAAGTGCTTTTAGGAGACTAAGTAATTAAACATATATGTCTATGACTAGTTGAACTTAGATAAAAAATAGCATGCAATTCATTGGCTCTATAGGATTTGCCCTTTCCTATATTGCCCTTATAAAAATTGTGTTTAGGCCAACTTTTTCAACGTTGAACTTCACACATTATATGTTAACCTGGTGGGAAGGTAAACTAAGAGTTTTAAATTTTAATGCACGAGTAATGCAGTGAAAATAACTGAAGAGTAATGGAAATGGATGCAATAAATGGATGGTAAAACACATAACACTCTCTCAAATTACCAACACAATCAAAAACAAGATTAAGAACAAAGAGGATAAAGAGAAGGATGGATAGTTGATGCCTCTGTTTTGTGGGACTCTAAGTTGTGGCGATTCTCTGGGATGTATGGAAATCCAAATGCTAGTCAACGAATCCATTCTTGGAACTTGATTAGAGGTCTTTATAATCACGACGATTCTGCATGGATAGTTAGTGGGGATTTTAATGCAACGCTATTACAGGAGAAGGATGGAGGAGCTCCTGTTAGAGAGTCCCAAATTCAACAGTTTCGTGACACTTTGGATGATTGTGGCCTTCAAGACTTGGATTATGTTGGAGATATTTTCACATGGTCCAATCGGCAGGAAGCAGATACTTAAATTAATGAGAGATTGGATCGGTTTCTAGCAAATGAAGAGTTCCTTTGTCTATTCCCTAACGGCTCAGTTCAGCATCTGAATTGGGCTCAATTAGATCACCGCCCAATTTTATTCAACACATGCCAGGAACATCGAATTGGTTATCACACCAAAAGACCACGTCTGTTTCGATTTGAAGAAGTTTGGACTCATCATCCAGAATGCAAGGATATTATTAATCATCAGAAATGTTGGACAGGACAAGACAATATCAGAAGCCGATTAGAGACTTGTCTCCAACGTTGCCGAGCTCGACTAAAGCAATGGGGTAGAGGCACGTTCTCTTCCATTCAGAGACAGATTGAAACTAATCAGAGGATTCTTCAAGATCTCTATAGTAAGCCTCCACCTTGGGACTTTCATGAGATAAAACGTGTAGAAGATCAACTAGATCAGGCTTTAGAGGAGGATGAGATATATTGGAAACAGCGATCACGTGAGAACTGGCTCCAATGGGGAGACAAAAATACCCGTTGGTTCCATAATCAAGCTACCATCAGAAGAAAGAGGAATGAAATTCGTGAAATTCAGGGTACGGACGGTAACATCATTGTGGACCAGAGGCAAATGGAGGAGGCCTTTGAATTATATTTCTCAAATATGTTTTCATCGTCTAGTCCGAATTCGGAAGACATTGATATGGCACTGCAGGATATTCAAGTAAAGGTAACACAAAGCATGAACGAAAGACTGATAGCTCCATTCACCAGATGTGAGATTGAGCGAGCCATTAAACAAATGCACCCTTCCAAGGCGCCTGGACCCCGATGGCTTCTCTGCATGTTTTTACCAGACTTTCTGGAACGAGGTTGGTGACATTATTGTTTTTAATTTCTTGGAAATGCTTAGTATGGTTAGATCGATTAGACCCTGAAATGATACATTTATTGCCTTAATTCCTAAAGTTAAGCACCCAAAGCTTTTGTCTGATTTCAGACCTATTAGCCTCTGTAATGTATCATACAAAATATTGGCTAAAGTTCTGGTAAATCGTATGAAATGGGCTCTTCAGGAGATAGTATCTGAAAACCAATCTGCTTTTGTACCTGGTAGATCAATTCATGATAATATCATTATAGGACATGAATGCCTACAAACGATCAAGAGCAAAAGTACAGGTCAAGGGGGATGGATAGCCTTGAAATTAGACATGAGTAAGGCATATGATAGGATTGAGTGGTGCTTTTTGGAACGACTTTTGTTAAAAATTGGGTTCCACTCTCAATGGGTCAAGCTGATTATGGAATGTGTTATGACACCATCCTTCTCAATATTACTGAATGGGGTTCTGTCGAGGCAAATCATACCCCAAAGAGGACTCCGTCAGGGGGATCCTTTATCTCCCTATTTGTTTTTGCTTGTATCTGAAGTCTTATCTTCACTTATATCAGGGGCGCAGTCAAGGAAACATATTACTGGTATAAAACCTGGTAAATTTTGCCCAGAAATTTCACATCTTTTCTTTGCATATGATTGTTTAATTTTTTTGCAAAGCATCGTTGGAACAGGTGTGGACTCTGCGTAATATTTTGTCACGCTATGAGAAAGCATCTGGCCAGTTGGTTAATATTAGCAAGTCAGCGTTATTTTTTTCACCAAATGTGAAGCCCGAATTTAGATCTGTAATTTCAAATCTGATTGGTATGCCTGTGGTAGACAACCTTGGATGATATCTGGGTGTTCCGTCCAATTTTACCAGGAAGAGGTGTGATGATTTCAGAGATATTAAACAAAGAGTATGGCAGACTCTTCAAGGATGGAAACATAATTTTTTCTCTGTGGGTGGCAAGGAGGTGTTGATTAAAAGTATAGCTCAATCTATTCCGACTTATATTATGAGCTGCTTTCGACTTCCTAAAACGCTATGTGATGATATGCACTCCATGATGGCGAGATTCTGGTGGGGATCTACAGAGGCGAAGAGAAGAATTCATTGGAAGAAATGAAGTAAATTATGCCTTCCAAAGGAGATGGGTGGTTTGAACTATCGGGACTTGGTGCTTTTTAATAAAGCATTGCTAGCCAAACAGGTATGGAGACTATTTACAAGCCCAAACTTATTAGTTTCCAAGGTCATTAAAGGCAGATATGCTCCGCATGATTGATTCTTGATAGCTCCAGTTAAATTTAAATGCTCTGTTTTTTGGAGAGGTTTTATGTGGGCTCGGGAGTTATTGTGTTCTGGATTAAGGAAAAGGATTGGGAATGGCTTAACCACACACTTCTTTACGGATCCATGGACCCCAAAAGAAACCACATTTAAGCCAATCAGAGCACCTGGTGTGGAAAATCATGAAGACCTTCGAGTATCTGATTTCATTACGCCATCTTTAGGATGGAATGTGGATAAGCTAAGGTCTATGGTGAGTGAGGAGGATGCTAATCTAATTGCCACCATTCCTATATGCTCGAGCAATGATGATGATATATGGATTTGGCATTACTGTCCTAATGGCCATTATGCAGTGAGAAGTGGATACAAACTTGCCATGAATTTATCCAATGATGTAGAATCTGCAAGTAATGGAGAAGTGAGGCAATGGTGGAATACGCTTTGGAAAGTCAAACTACCATCAAAAGTGAAGCTATTCATATGGAGGGCTTTCCATGATTGTTTACCTACTAACTATTGTTTATGGCGGCGAGGTATGGAGATATCACCTATATGCGATATATGTCACTCCGCTAAGAAGGCCATTGATCATGCTTTATGTGGATGTAAACGTGCAAAGTGTATATGTGATATCAGTTTTCCAAGGGTAGATAAAGGGATTCAAGGCAGCAATAATTTTGCAGATCGTATCATTTATCTTGCTAGGAATCTTGAGACAATTGATTTTGAGAAAGCTTGCATTACCTTTTGGTCTGTATGGAATGATAGAAACAATGTTTCTCATAATGAGGGGATTGTAGATTGGAAGCAACGATGTGAGTGGATTCAGGAATATTGGGAGAGCACTACCACAAAGAGGAGACAGACGAGTGCCAATGTTTCTTCCTCTAATAGTGTGCCTCATACGTCACCATGTCCGTTGCAATTATACACTGATGCAGCGATTGGTTCGGACCAAATAGGGGTGGGATATGGGGCCATCATTGTTCATTTGGATGGTGTGGTGGAGGGCGCAATGGAGTCTTACGACACAACACCTCATACCCCTTTAGCAGCAAAGGTGAATGCCATAATTCATGGTATTAGGTTATTGCAACGTATGGATGTCTTTACTGCCACTGTTTTTTAGACTCTTTAGTAGCTGTTAAGATGATTCGAGGTGAGATGCAATTAAATTCTGATGTTCATCATTGGGTTCTTCAAATTCGAAGGATGCAGATTTCCTTTCAGGAGTTGAATTTTGCTCACATTAATAGGGAGTCTAATGTGTGAGCTGATTATTTAGCTCGGGAAGCGTTAGCTAAACGTACTTCTATGCTTTGGTTAGATAATATTCCACAACGGTTGGCGTCAACATCGACCACCTCCTCTGCAAACGATGACCGGCTACCGGCTTTACCCGTCGTCTCTTCTTCCACCTCCTTCGTCACCAATCCCGTTCATACACCTGTTACTACTCAACGTCTTCATCAGACTACCACAATGCCCCTTTCTAACACCCAGACTAGACCTCTGAACTCCAATATTCCCCCATTTCAATAG

mRNA sequence

ATGGTCGGCCTCGGCCTAGGCCGACCACTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCCGCTCGGTCCCTCCTGCTTCTGGCCGCCCCGGTTCCGCCTGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCATGTTTACTCTTTTGCTGGCCTTCCCCCGCTCTCAAACAAATTCACTCTCGATTATCACGTGGAGCGAAGCCGCCTCTCCCTCTCTCACGCTCGCCTTCAGTCACCAACTCGCCGGCCTCTCTCCCTCTGCTTTGTGGCGTCGACGGCGATCCTCCGATAGAAGTGAAGCTCCAGCCGCCGCCGTAGTTACAGTTCGCAGCCACGTAGCCTGCTGCCGCCGCCCTTACAGCCGTCGGTCTGAATCTTCGTCCAAGCACCTCGAGCCGCAGAAGCCGTGTTCGCTTTGGGATTTAGCGTTGTTTAAGTTGCTGTCCAGTGAGGGGTTGGAGCATTTGGAGTTACCCATCCAATTTCGAGTTCATAATTGCAGATTTTCGCTCATTCGAAGTACTGTCCAGCAAGCTTTTGAGTCGTTTCAACTGGATTTTTGTAGGGTACATGAAATTGATGTACTTCAAGAGGTGCCTACACAAGACTTAGGACATGAAATTGATGTACTTGAGTCGAGTTCTCTGATGGAGGCTAGAGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACATTTACGAGCAAGACATGAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACATGCGCAAGTTGCAATTTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGTAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTTTCTTATTGAAGTTGGGGCCTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAAGGAAAGAGCGGATGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGCATAAAGTTCCTTGGTCTGTGAAGAGTGTTAGGAATAGCAGTGAAATTTCTTCTCGAAGTTCTATTGAAAACAAAGGAGCGTCAGATCTTGAATCAGAAGATGAGAGGTCGATCTCCGAACTATTGGATGCCATTCAGCTTGGTGAAGTGACACCCATTTTTGATGTTTTTCTTCCACATAGCAAGTTTAGAAAGTCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAAAAGATATTGAAGTCCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGTTGTGGCGATTCTCTGGGATGTATGGAAATCCAAATGCTAGTCAACGAATCCATTCTTGGAACTTGATTAGAGGTCTTTATAATCACGACGATTCTGCATGGATAGTTAGTGGGGATTTTAATGCAACGCTATTACAGGAGAAGGATGGAGGAGCTCCTGTTAGAGAGTCCCAAATTCAACAGTTTCGTGACACTTTGGATGATTGTGGCCTTCAAGACTTGGATTATGTTGGAGATATTTTCACATGA

Coding sequence (CDS)

ATGGTCGGCCTCGGCCTAGGCCGACCACTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCCGCTCGGTCCCTCCTGCTTCTGGCCGCCCCGGTTCCGCCTGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCATGTTTACTCTTTTGCTGGCCTTCCCCCGCTCTCAAACAAATTCACTCTCGATTATCACGTGGAGCGAAGCCGCCTCTCCCTCTCTCACGCTCGCCTTCAGTCACCAACTCGCCGGCCTCTCTCCCTCTGCTTTGTGGCGTCGACGGCGATCCTCCGATAGAAGTGAAGCTCCAGCCGCCGCCGTAGTTACAGTTCGCAGCCACGTAGCCTGCTGCCGCCGCCCTTACAGCCGTCGGTCTGAATCTTCGTCCAAGCACCTCGAGCCGCAGAAGCCGTGTTCGCTTTGGGATTTAGCGTTGTTTAAGTTGCTGTCCAGTGAGGGGTTGGAGCATTTGGAGTTACCCATCCAATTTCGAGTTCATAATTGCAGATTTTCGCTCATTCGAAGTACTGTCCAGCAAGCTTTTGAGTCGTTTCAACTGGATTTTTGTAGGGTACATGAAATTGATGTACTTCAAGAGGTGCCTACACAAGACTTAGGACATGAAATTGATGTACTTGAGTCGAGTTCTCTGATGGAGGCTAGAGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACATTTACGAGCAAGACATGAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACATGCGCAAGTTGCAATTTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGTAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTTTCTTATTGAAGTTGGGGCCTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAAGGAAAGAGCGGATGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGCATAAAGTTCCTTGGTCTGTGAAGAGTGTTAGGAATAGCAGTGAAATTTCTTCTCGAAGTTCTATTGAAAACAAAGGAGCGTCAGATCTTGAATCAGAAGATGAGAGGTCGATCTCCGAACTATTGGATGCCATTCAGCTTGGTGAAGTGACACCCATTTTTGATGTTTTTCTTCCACATAGCAAGTTTAGAAAGTCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAAAAGATATTGAAGTCCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGTTGTGGCGATTCTCTGGGATGTATGGAAATCCAAATGCTAGTCAACGAATCCATTCTTGGAACTTGATTAGAGGTCTTTATAATCACGACGATTCTGCATGGATAGTTAGTGGGGATTTTAATGCAACGCTATTACAGGAGAAGGATGGAGGAGCTCCTGTTAGAGAGTCCCAAATTCAACAGTTTCGTGACACTTTGGATGATTGTGGCCTTCAAGACTTGGATTATGTTGGAGATATTTTCACATGA

Protein sequence

MVGLGLGRPLGPLARAESVCLRSVPPASGRPGSACIGGGVASTTPVCMFTLLLAFPRSQTNSLSIITWSEAASPSLTLAFSHQLAGLSPSALWRRRRSSDRSEAPAAAVVTVRSHVACCRRPYSRRSESSSKHLEPQKPCSLWDLALFKLLSSEGLEHLELPIQFRVHNCRFSLIRSTVQQAFESFQLDFCRVHEIDVLQEVPTQDLGHEIDVLESSSLMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIPMKYCHVEHGRVCFFSFDKLWRFSGMYGNPNASQRIHSWNLIRGLYNHDDSAWIVSGDFNATLLQEKDGGAPVRESQIQQFRDTLDDCGLQDLDYVGDIFT

Homology

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BLAST of Spg032850 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 487.3 bits (1253), Expect = 1.8e-133
Identity = 234/259 (90.35%), Postives = 247/259 (95.37%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWESSSGGASGDD+IYEQD++DEEECLCASG MRKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LEN+GSLWTTTGIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGK+G
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           CLWEQFEVYRHLKSLGFIVGKHKVPWSVK VRN S+IS +SSIEN+GA DLES+DERSIS
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           ELL +IQL +V PIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 460 MKYCHVEHGRVCFFSFDKL 479
           +KYCHVEHGRVCFFSFDKL
Sbjct: 241 IKYCHVEHGRVCFFSFDKL 259

[Close]

BLAST of Spg032850 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 480.3 bits (1235), Expect = 2.2e-131
Identity = 230/273 (84.25%), Postives = 247/273 (90.48%), Query Frame = 0


Query: 206 DLGHEIDVLESSSLMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHA 265
           D  H I     S LMEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHA
Sbjct: 258 DFAHPIRTATRSFLMEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHA 317

Query: 266 STARWNDQMGMAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLS 325
           STARWND+MGMAEVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLS
Sbjct: 318 STARWNDEMGMAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLS 377

Query: 326 LKDVYKKVAEGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENK 385
           LKDVYKKVAEGKS C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISS+SSIENK
Sbjct: 378 LKDVYKKVAEGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENK 437

Query: 386 GASDLESEDERSISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPK 445
           G++D  SEDE+SI EL+DAIQL EVTPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK
Sbjct: 438 GSTDFGSEDEKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPK 497

Query: 446 KDIEVLERTSRGIPMKYCHVEHGRVCFFSFDKL 479
            DIEV+ER S GIPMKYCHVEHGRVCFFSFDK+
Sbjct: 498 TDIEVIERKSGGIPMKYCHVEHGRVCFFSFDKV 530

[Close]

BLAST of Spg032850 vs. NCBI nr
Match: XP_038883355.1 (uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883357.1 uncharacterized protein LOC120074337 [Benincasa hispida])

HSP 1 Score: 478.8 bits (1231), Expect = 6.4e-131
Identity = 230/257 (89.49%), Postives = 245/257 (95.33%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWESSSGGASGD+D YE+D+ +EEECLCASGY+RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEAVDWESSSGGASGDEDNYEEDINNEEECLCASGYLRKLQFRKHASTARWNDRMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSL+DVYKK+AEGK+G
Sbjct: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLEDVYKKIAEGKNG 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           CLWEQFEVYRHLKSLGFIVGKHKVPWS+KSVR+ S ISS SSIENKGASD++SEDERSIS
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSLKSVRDGSNISSPSSIENKGASDVKSEDERSIS 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           ELLD IQL EV PIFDVFLPH+KFRKSSPGDPNFMV LTRGYPP KKD+EVL RTSRGIP
Sbjct: 181 ELLDGIQLEEVMPIFDVFLPHNKFRKSSPGDPNFMVYLTRGYPPSKKDLEVLARTSRGIP 240

Query: 460 MKYCHVEHGRVCFFSFD 477
           MKYCHVEHGRVCFFSFD
Sbjct: 241 MKYCHVEHGRVCFFSFD 257

[Close]

BLAST of Spg032850 vs. NCBI nr
Match: XP_023538818.1 (tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475.3 bits (1222), Expect = 7.1e-130
Identity = 226/259 (87.26%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           EL+DAIQL EVTPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 460 MKYCHVEHGRVCFFSFDKL 479
           MKYCHVEHGRVCFFSFDK+
Sbjct: 241 MKYCHVEHGRVCFFSFDKV 259

[Close]

BLAST of Spg032850 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 473.8 bits (1218), Expect = 2.1e-129
Identity = 225/259 (86.87%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISS+SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           EL+DAIQL EVTPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 460 MKYCHVEHGRVCFFSFDKL 479
           MKYCHVEHGRVCFFSFDK+
Sbjct: 241 MKYCHVEHGRVCFFSFDKV 259

[Close]

BLAST of Spg032850 vs. ExPASy Swiss-Prot
Match: O74908 (Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen54 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.8e-06
Identity = 40/123 (32.52%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 256 MRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTTGIVRC-GKIYCSIEETLFLIEVGAL 315
           + +L   KHA  A WN Q GM+ V +  G L+ T G      +++   EETL+L+E G++
Sbjct: 74  VERLISAKHAIIATWNAQNGMSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGSM 133

Query: 316 HLLDHDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRHLKSLGF-IVGKHKVPWSVKSVRNS 375
                +   +SL+ VY   +    G L E + VY HL+  GF ++  + VP      R  
Sbjct: 134 ECWSEEGLPMSLQAVY-SASIPLCGSL-ENYLVYAHLRRCGFSVIRSNLVPVKEDEYRCD 193

Query: 376 SEI 377
           S+I
Sbjct: 194 SKI 194

[Close]

BLAST of Spg032850 vs. ExPASy Swiss-Prot
Match: Q74ZJ5 (tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEN54 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-04
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 268 ARWNDQMGMAEVLENKGSLWTTTGIV-RCGKIYCSIEETLFLIEVGAL----------HL 327
           A W ++  MA +   +GS   T G V + G+ +  + E ++L+E G +            
Sbjct: 88  AYWEEEQRMARIPNARGSFTNTMGKVDKHGQCWLQLHEFVYLVERGTVSPYLALTVGDEK 147

Query: 328 LDHDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRHLKSLGFIV 359
            +H++  LS++DVY   +  +     ++F VY HLK LGFIV
Sbjct: 148 SNHEDVLLSVQDVYALFSSTEE---LDEFLVYAHLKRLGFIV 186

[Close]

BLAST of Spg032850 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 8.8e-134
Identity = 234/259 (90.35%), Postives = 247/259 (95.37%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWESSSGGASGDD+IYEQD++DEEECLCASG MRKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LEN+GSLWTTTGIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGK+G
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           CLWEQFEVYRHLKSLGFIVGKHKVPWSVK VRN S+IS +SSIEN+GA DLES+DERSIS
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           ELL +IQL +V PIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 460 MKYCHVEHGRVCFFSFDKL 479
           +KYCHVEHGRVCFFSFDKL
Sbjct: 241 IKYCHVEHGRVCFFSFDKL 259

[Close]

BLAST of Spg032850 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 1.7e-129
Identity = 226/262 (86.26%), Postives = 244/262 (93.13%), Query Frame = 0


Query: 217 SSLMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGM 276
           S LMEA DWE SSGGAS DDD +EQD+K+EEECL +SG MRKLQFRKHASTARWND+MGM
Sbjct: 2   SFLMEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGM 61

Query: 277 AEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG 336
           AEVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG
Sbjct: 62  AEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG 121

Query: 337 KSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDER 396
           KS C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D ESEDE+
Sbjct: 122 KSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEK 181

Query: 397 SISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSR 456
           SI ELL+A+QL E+TPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIEV+ER S 
Sbjct: 182 SICELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSG 241

Query: 457 GIPMKYCHVEHGRVCFFSFDKL 479
           GIPMKYCHVEHGRVCFFSFDK+
Sbjct: 242 GIPMKYCHVEHGRVCFFSFDKV 263

[Close]

BLAST of Spg032850 vs. ExPASy TrEMBL
Match: A0A6J1I794 (tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 1.7e-129
Identity = 226/262 (86.26%), Postives = 244/262 (93.13%), Query Frame = 0


Query: 217 SSLMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGM 276
           S LMEA DWE SSGGAS DDD +EQD+K+EEECL +SG MRKLQFRKHASTARWND+MGM
Sbjct: 12  SFLMEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGM 71

Query: 277 AEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG 336
           AEVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG
Sbjct: 72  AEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG 131

Query: 337 KSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDER 396
           KS C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D ESEDE+
Sbjct: 132 KSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEK 191

Query: 397 SISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSR 456
           SI ELL+A+QL E+TPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIEV+ER S 
Sbjct: 192 SICELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSG 251

Query: 457 GIPMKYCHVEHGRVCFFSFDKL 479
           GIPMKYCHVEHGRVCFFSFDK+
Sbjct: 252 GIPMKYCHVEHGRVCFFSFDKV 273

[Close]

BLAST of Spg032850 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 2.2e-129
Identity = 224/259 (86.49%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  +N  +ISS+SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           EL+DAIQL EVTPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 460 MKYCHVEHGRVCFFSFDKL 479
           MKYCHVEHGRVCFFSFDK+
Sbjct: 241 MKYCHVEHGRVCFFSFDKV 259

[Close]

BLAST of Spg032850 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 8.5e-129
Identity = 224/259 (86.49%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 220 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 279
           MEA DWE SSGGAS DDD +EQD+K+EEECL +SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 280 LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 339
           LENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 340 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 399
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D ESEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 180

Query: 400 ELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLERTSRGIP 459
           ELL+A+QL E+TPIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIEV+ER S GIP
Sbjct: 181 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 460 MKYCHVEHGRVCFFSFDKL 479
           MKYCHVEHGRVCFFSFDK+
Sbjct: 241 MKYCHVEHGRVCFFSFDKV 259

[Close]

BLAST of Spg032850 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-57
Identity = 117/266 (43.98%), Postives = 170/266 (63.91%), Query Frame = 0


Query: 220 MEARDWESSS-----GGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQM 279
           ME +DWE+SS     GG   DDD          E   + G + KLQFR  +S ARW  ++
Sbjct: 1   MEEKDWEASSSSENEGGFPNDDD----------EEFHSGGSVPKLQFRVGSSKARWITEL 60

Query: 280 GMAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKV 339
           GMAEV   +G LWTTTGI+R GK YC IEE L+L E+G L +L + D+  + LKD+Y+K+
Sbjct: 61  GMAEVEVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKI 120

Query: 340 AEGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLE-S 399
           AE KSGC WE +EVYR+LK LG+I+G+H V W++K        ++R + E + A   E  
Sbjct: 121 AEEKSGCSWENYEVYRYLKGLGYILGRHGVSWTLKD-------AARPNGEEESACAGECP 180

Query: 400 EDERSISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEVLE 459
            D  ++++LL  +Q+ +   +FDV+LP+S+F+KSSPG+P+F+ C +   PP K+DI+VL+
Sbjct: 181 ADNDTVTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQ 240

Query: 460 RTSRGIPMKYCHVEHGRVCFFSFDKL 479
           +     P+ +CH+  GR  FFSF  +
Sbjct: 241 KRI-AAPLTFCHIAQGRASFFSFSSI 248

[Close]

BLAST of Spg032850 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 174.5 bits (441), Expect = 2.4e-43
Identity = 83/175 (47.43%), Postives = 121/175 (69.14%), Query Frame = 0


Query: 276 MAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 335
           MAEV   +G LWTTTGI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 336 EGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESED 395
           EGK GC WE +EVYR+LK LG+I+G+H VPW+ K   N++      S+     +    +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVNTTPSDEDESL----CAAEFFQD 120

Query: 396 ERSISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIE 450
             S+++LL  + + +  P+FDV+LP+S+F+KSSPG+P+F+ C +   PP K++I+
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIK 171

[Close]

BLAST of Spg032850 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 166.4 bits (420), Expect = 6.6e-41
Identity = 79/164 (48.17%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 276 MAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 335
           MAEV   +G LWTTTGI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 336 EGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESED 395
           EGK GC WE +EVYR+LK LG+I+G+H VPW+ K   N++      S+     +    +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVNTTPSDEDESL----CAAEFFQD 120

Query: 396 ERSISELLDAIQLGEVTPIFDVFLPHSKFRKSSPGDPNFMVCLT 439
             S+++LL  + + +  P+FDV+LP+S+F+KSSPG+P+F+ C +
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFS 160

The following BLAST results are available for this feature:

BLAST of Spg032850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156818.1	1.8e-133	90.35	uncharacterized protein LOC111023660 [Momordica charantia]	[more]
KAG6596967.1	2.2e-131	84.25	Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp....	[more]
XP_038883355.1	6.4e-131	89.49	uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 unchara...	[more]
XP_023538818.1	7.1e-130	87.26	tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028441.1	2.1e-129	86.87	tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Spg032850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74908	8.8e-06	32.52	Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (...	[more]
Q74ZJ5	2.8e-04	30.39	tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 /...	[more]

BLAST of Spg032850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRN3	8.8e-134	90.35	uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1ICR8	1.7e-129	86.26	tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1I794	1.7e-129	86.26	tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FKK4	2.2e-129	86.49	tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8D9	8.5e-129	86.49	tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Spg032850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57360.1	1.0e-57	43.98	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.2	2.4e-43	47.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02370.1	6.6e-41	48.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024336	tRNA-splicing endonuclease, subunit Sen54, N-terminal	PFAM	PF12928	tRNA_int_end_N2	coord: 259..316 e-value: 4.2E-9 score: 36.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 420..554 e-value: 7.3E-7 score: 31.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 470..551
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 220..477

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032850.1	Spg032850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0000379	tRNA-type intron splice site recognition and cleavage
cellular_component	GO:0000214	tRNA-intron endonuclease complex
molecular_function	GO:0004519	endonuclease activity