Spg032841 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032841
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold11: 15263121 .. 15264814 (+)
RNA-Seq Expression	Spg032841
Synteny	Spg032841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGATCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGAATTTCTTGAAAGTTAGTTCATTTTCTAGCAAATTTAATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTAGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAATATTTCGTGAGCCACAAATGATGTTAAGTAGGGTTAATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTGGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGCAAATGAAGAGTTTGATGTGTATTTCATTAATTTTTGTTAAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCACGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTACCATGAATGATATATGATTTTTATGAACGGTTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAACGAGGTTTATATATGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATCTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTAATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

mRNA sequence

ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGATCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Coding sequence (CDS)

ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGATCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Protein sequence

MVLRLKKIGKDHAKPAIAESEFNLSTSGFLFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHIVNVL

Homology

[Close]

BLAST of Spg032841 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-RIRSSIRPRGNRSSLQTGELDKT 89
           LF LSY EGTKSTGFSSKPGG LV S  LSIL       +  + PRGNR SLQTGELDKT
Sbjct: 19  LFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLYLGPRGNRLSLQTGELDKT 78

Query: 90  PEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESV 149
                        SLSTLSVLRDN+AV  IELPVPDTLPTSAE+S ++SSTW+ELY ESV
Sbjct: 79  V----------IFSLSTLSVLRDNNAV--IELPVPDTLPTSAESSGSNSSTWLELYFESV 128

Query: 150 HI 151
           H+
Sbjct: 139 HV 128

[Close]

BLAST of Spg032841 vs. NCBI nr
Match: KAA0041121.1 (hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 9.1e-27
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRS-------------SIRPRGN 89
           LFGLSY EGTKST FSSK GG LVFS  LSIL      +               I PRGN
Sbjct: 19  LFGLSYPEGTKSTRFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDIMPRGN 78

Query: 90  RSSLQTGELDKT------PEAIWYRVHTG-----YISLSTLSVLRDNDAVVEIELPVPDT 149
           R SLQTGELD T       E +  R++          LSTLSVLRDND VVEIELPVPD 
Sbjct: 79  RPSLQTGELDNTISIDYMTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDR 138

Query: 150 LPTSAENSRTSSSTWVELYIESVHI 151
           LPTSAE+S ++SSTW+ELY ESVH+
Sbjct: 139 LPTSAESSASNSSTWLELYFESVHV 163

[Close]

BLAST of Spg032841 vs. NCBI nr
Match: KAA0054353.1 (uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12390.1 uncharacterized protein E5676_scaffold302G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 5.9e-26
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDK 89
           LFGLSY E T+STGFSSKPGG LVFS  LSIL    +++    + PRGN  SLQTGELDK
Sbjct: 19  LFGLSYPEETRSTGFSSKPGGFLVFSEALSILEVQKSNQKLYLVWPRGNSLSLQTGELDK 78

Query: 90  TPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIES 149
           T              LSTLSVLRDND VVEIELPV DTL TSAE+S ++SSTW++LY ES
Sbjct: 79  TV----------IFPLSTLSVLRDNDVVVEIELPVLDTLATSAESSGSNSSTWLKLYFES 131

Query: 150 VHI 151
           +H+
Sbjct: 139 LHV 131

[Close]

BLAST of Spg032841 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-24
Identity = 80/137 (58.39%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-----------RIRS-----SIRP 89
           LF LSY EGTKSTGFSSKPGG LVFS  LSIL               RI +     S  P
Sbjct: 19  LFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLYLVLEVRISNLENLKSGMP 78

Query: 90  RGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENS 149
           RGNR SLQT ELDKT              LSTLSVLRDN+ V  IELPVPD LPTSAE+S
Sbjct: 79  RGNRLSLQTRELDKTV----------IFPLSTLSVLRDNNVV--IELPVPDILPTSAESS 138

Query: 150 RTSSSTWVELYIESVHI 151
            ++SSTW+ELY ESVH+
Sbjct: 139 GSNSSTWLELYFESVHV 143

[Close]

BLAST of Spg032841 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 71/116 (61.21%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 41  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSIR---PRGNRSSLQTGELDKTPEAIWY 100
           STGFSSKPGG LVFS  LSI        ++   I    PRGNR  LQTGELDK       
Sbjct: 265 STGFSSKPGGFLVFSDALSIQEVHKSNQKLYLEIDKEWPRGNRPGLQTGELDKIV----- 324

Query: 101 RVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI 151
                   LSTLSVLRDNDAVVEIELP+PDTLPTSAE+S ++SSTW+ELY ESVH+
Sbjct: 325 -----IFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHV 370

[Close]

BLAST of Spg032841 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 8.9e-28
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-RIRSSIRPRGNRSSLQTGELDKT 89
           LF LSY EGTKSTGFSSKPGG LV S  LSIL       +  + PRGNR SLQTGELDKT
Sbjct: 19  LFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLYLGPRGNRLSLQTGELDKT 78

Query: 90  PEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESV 149
                        SLSTLSVLRDN+AV  IELPVPDTLPTSAE+S ++SSTW+ELY ESV
Sbjct: 79  V----------IFSLSTLSVLRDNNAV--IELPVPDTLPTSAESSGSNSSTWLELYFESV 128

Query: 150 HI 151
           H+
Sbjct: 139 HV 128

[Close]

BLAST of Spg032841 vs. ExPASy TrEMBL
Match: A0A5A7THH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00290 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRS-------------SIRPRGN 89
           LFGLSY EGTKST FSSK GG LVFS  LSIL      +               I PRGN
Sbjct: 19  LFGLSYPEGTKSTRFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDIMPRGN 78

Query: 90  RSSLQTGELDKT------PEAIWYRVHTG-----YISLSTLSVLRDNDAVVEIELPVPDT 149
           R SLQTGELD T       E +  R++          LSTLSVLRDND VVEIELPVPD 
Sbjct: 79  RPSLQTGELDNTISIDYMTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDR 138

Query: 150 LPTSAENSRTSSSTWVELYIESVHI 151
           LPTSAE+S ++SSTW+ELY ESVH+
Sbjct: 139 LPTSAESSASNSSTWLELYFESVHV 163

[Close]

BLAST of Spg032841 vs. ExPASy TrEMBL
Match: A0A5A7UEC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001720 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDK 89
           LFGLSY E T+STGFSSKPGG LVFS  LSIL    +++    + PRGN  SLQTGELDK
Sbjct: 19  LFGLSYPEETRSTGFSSKPGGFLVFSEALSILEVQKSNQKLYLVWPRGNSLSLQTGELDK 78

Query: 90  TPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIES 149
           T              LSTLSVLRDND VVEIELPV DTL TSAE+S ++SSTW++LY ES
Sbjct: 79  TV----------IFPLSTLSVLRDNDVVVEIELPVLDTLATSAESSGSNSSTWLKLYFES 131

Query: 150 VHI 151
           +H+
Sbjct: 139 LHV 131

[Close]

BLAST of Spg032841 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.7e-24
Identity = 80/137 (58.39%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 30  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-----------RIRS-----SIRP 89
           LF LSY EGTKSTGFSSKPGG LVFS  LSIL               RI +     S  P
Sbjct: 19  LFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLYLVLEVRISNLENLKSGMP 78

Query: 90  RGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENS 149
           RGNR SLQT ELDKT              LSTLSVLRDN+ V  IELPVPD LPTSAE+S
Sbjct: 79  RGNRLSLQTRELDKTV----------IFPLSTLSVLRDNNVV--IELPVPDILPTSAESS 138

Query: 150 RTSSSTWVELYIESVHI 151
            ++SSTW+ELY ESVH+
Sbjct: 139 GSNSSTWLELYFESVHV 143

[Close]

BLAST of Spg032841 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 71/116 (61.21%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 41  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSIR---PRGNRSSLQTGELDKTPEAIWY 100
           STGFSSKPGG LVFS  LSI        ++   I    PRGNR  LQTGELDK       
Sbjct: 265 STGFSSKPGGFLVFSDALSIQEVHKSNQKLYLEIDKEWPRGNRPGLQTGELDKIV----- 324

Query: 101 RVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI 151
                   LSTLSVLRDNDAVVEIELP+PDTLPTSAE+S ++SSTW+ELY ESVH+
Sbjct: 325 -----IFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHV 370

The following BLAST results are available for this feature:

BLAST of Spg032841 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11835.1	1.8e-27	65.57	uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]	[more]
KAA0041121.1	9.1e-27	56.55	hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]	[more]
KAA0054353.1	5.9e-26	61.79	uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0058280.1	5.5e-24	58.39	uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]	[more]
TYK25935.1	1.4e-22	61.21	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg032841 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJX3	8.9e-28	65.57	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7THH5	4.4e-27	56.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UEC1	2.9e-26	61.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UT17	2.7e-24	58.39	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7T9P7	6.6e-23	61.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000...	[more]

BLAST of Spg032841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032841.1	Spg032841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding