Spg032667 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032667
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	MuDRA-like transposase
Location	scaffold11: 8869030 .. 8870091 (+)
RNA-Seq Expression	Spg032667
Synteny	Spg032667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTGAGGTGGGGCAGTCACCAAGTATTTGGAGGATGTCGGTCTGGATAAGTGGTCGCGCACATCAAACTAAAACTAGGTATGATAACATGACGTCCAACAGTGCTGAGTGCTTCAACACACTGACGGTGGAAGCCCGATTGTTACCGATAATGTGCTTGCTTGAGAACGTAAGAGGCATCATCCAACAATGGTTTTACGAATAGAGGAATCATTGGGGATGTAGAACGGCGACTTGGTCAAACTATTGTGAGAATCGCATGGCCAGTGAATGCAAAAAGGGTCGACAATACAGAGTCGAGCCGATCGATTGTTATAAGGTACATGTCGGAGACGGCCGGTTGGATGACATTGTTAACCTGCAGAGTCAAGAGTGTACGTGTCGAAAGTTTCAGTCGTTGGAGATCCCGTGTTCACATGCTATCGTAGCCGCTAGGGAACACAACATTCCCATGGACGCGCTTTGTAGTGAGTACTACAGTGTGCGTTGCCTAATGGCTGCATACGCAGAATTCGTGAATCTAGTCGGCCACATGTCTGAGTGGAAAAAACCAACCGGTTACGCGGTGGCTAGTTGTCACAATATTACCAATGAATGTAAAAAAAAACATTTATTTGTCTGGATTCACGCTATTGATTCCACTATTAGTTCAGCGTTATCATCAACCCTCACACATCCACAAAATTAAAAAAAAAAAACTTCACATATTAATATTAGTTCAGATCCAAATGACATCCATATTACAATAACCAAATCATTCATTCATATATAAATAATTTGTTATGTTCTCTCAAAACTACATACATCGAACACAAAGCAGGCTACTTACGTATTCATACATATATTAACCCTATTCCATAAGTCTCAAGAGCTTCCAGATGTATAGAGGAAGTGTATTGCTCAATTCCACTCCCGGAATAGGGATTTCGTGCTCTCAAAAAATGGACAAAGTATTATAAGAGCCATCGATGTCGTTCCGCGAGTGACTGGAGGAAGCCATGACGGACGATCAAAGAGAACCTATGTCTATGAAGGTCATGAGCAAGAACAACCTTGA

mRNA sequence

ATGGAATTTGAGGTGGGGCAGTCACCAAGTATTTGGAGGATGTCGGTCTGGATAAGTGGTCGCGCACATCAAACTAAAACTAGGTATGATAACATGACGTCCAACAGTGCTGAGTGCTTCAACACACTGACGGTGGAAGCCCGATTGTTACCGATAATGTGCTTGCTTGAGAACAATCGCATGGCCAGTGAATGCAAAAAGGGTCGACAATACAGAGTCGAGCCGATCGATTGTTATAAGGTACATGTCGGAGACGGCCGGTTGGATGACATTGTTAACCTGCAGAGTCAAGAGTGTACGTGTCGAAAGTTTCAGTCGTTGGAGATCCCGTGTTCACATGCTATCGTAGCCGCTAGGGAACACAACATTCCCATGGACGCGCTTTGTAGTGAGTACTACAGTGTGCGTTGCCTAATGGCTGCATACGCAGAATTCAGGAAGTGTATTGCTCAATTCCACTCCCGGAATAGGGATTTCGTGCTCTCAAAAAATGGACAAAGTATTATAAGAGCCATCGATGTCGTTCCGCGAGTGACTGGAGGAAGCCATGACGGACGATCAAAGAGAACCTATGTCTATGAAGGTCATGAGCAAGAACAACCTTGA

Coding sequence (CDS)

ATGGAATTTGAGGTGGGGCAGTCACCAAGTATTTGGAGGATGTCGGTCTGGATAAGTGGTCGCGCACATCAAACTAAAACTAGGTATGATAACATGACGTCCAACAGTGCTGAGTGCTTCAACACACTGACGGTGGAAGCCCGATTGTTACCGATAATGTGCTTGCTTGAGAACAATCGCATGGCCAGTGAATGCAAAAAGGGTCGACAATACAGAGTCGAGCCGATCGATTGTTATAAGGTACATGTCGGAGACGGCCGGTTGGATGACATTGTTAACCTGCAGAGTCAAGAGTGTACGTGTCGAAAGTTTCAGTCGTTGGAGATCCCGTGTTCACATGCTATCGTAGCCGCTAGGGAACACAACATTCCCATGGACGCGCTTTGTAGTGAGTACTACAGTGTGCGTTGCCTAATGGCTGCATACGCAGAATTCAGGAAGTGTATTGCTCAATTCCACTCCCGGAATAGGGATTTCGTGCTCTCAAAAAATGGACAAAGTATTATAAGAGCCATCGATGTCGTTCCGCGAGTGACTGGAGGAAGCCATGACGGACGATCAAAGAGAACCTATGTCTATGAAGGTCATGAGCAAGAACAACCTTGA

Protein sequence

MEFEVGQSPSIWRMSVWISGRAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNRMASECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCSHAIVAAREHNIPMDALCSEYYSVRCLMAAYAEFRKCIAQFHSRNRDFVLSKNGQSIIRAIDVVPRVTGGSHDGRSKRTYVYEGHEQEQP

Homology

[Close]

BLAST of Spg032667 vs. NCBI nr
Match: XP_038902409.1 (uncharacterized protein LOC120089049 [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 3.2e-40
Identity = 90/156 (57.69%), Postives = 104/156 (66.67%), Query Frame = 0


Query: 17  WISGRAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLEN------------------ 76
           W+  R +QT+ RYDNMTSNSAECFN+LT E R LPIMCLLE+                  
Sbjct: 132 WV--RVYQTERRYDNMTSNSAECFNSLTKEYRQLPIMCLLEHVRGLIQSWFYEWRNYWTS 191

Query: 77  ----------NRMASECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLE 136
                     NR+A+EC KGR+YRVEPIDCY++HV D RLD IVNL  +EC C+KF SL 
Sbjct: 192 RTTSHSDYCENRLATECDKGRRYRVEPIDCYRIHVRDNRLDGIVNLHMKECICKKFDSLG 251

Query: 137 IPCSHAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           I CSH IVAARE NIP+  LCS +YSV  LMAAYAE
Sbjct: 252 ISCSHTIVAAREENIPIHGLCSPFYSVDFLMAAYAE 285

[Close]

BLAST of Spg032667 vs. NCBI nr
Match: XP_038891686.1 (uncharacterized protein LOC120081080 [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 7.4e-37
Identity = 84/150 (56.00%), Postives = 99/150 (66.00%), Query Frame = 0


Query: 23  HQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLEN------------------------ 82
           +QT+ RYDNMTSNSAECFN+LT E R LPIMCLLE+                        
Sbjct: 98  YQTEQRYDNMTSNSAECFNSLTKEYRQLPIMCLLEHVRGLIQSWFYEWRNYWASRMTSHS 157

Query: 83  ----NRMASECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCSHA 142
               NR+ +EC KGR+YRVE IDCY++HV D RLD I NL ++ECTC++F SL I CSHA
Sbjct: 158 NYCENRLTTECDKGRRYRVELIDCYRIHVRDNRLDSIGNLHTKECTCKEFDSLGILCSHA 217

Query: 143 IVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           IV ARE NIP+ ALCS +YSV  LM  YAE
Sbjct: 218 IVTARERNIPIHALCSPFYSVDFLMVVYAE 247

[Close]

BLAST of Spg032667 vs. NCBI nr
Match: XP_038895865.1 (uncharacterized protein LOC120084035 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 9.7e-37
Identity = 81/152 (53.29%), Postives = 100/152 (65.79%), Query Frame = 0


Query: 21  RAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLEN---------------------- 80
           R +Q + RYDNMTSNS ECFN+LT E RL+PI+C +E+                      
Sbjct: 26  RVYQIERRYDNMTSNSVECFNSLTKEYRLMPIVCFIEHVRGMLQSWFYERRNYWASRTIL 85

Query: 81  ------NRMASECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCS 140
                  R+ASE  KGR+Y+VEPIDCY+VHV D RLDDIVNL ++ECTC++F SL IPCS
Sbjct: 86  HSDYCETRLASEADKGRRYQVEPIDCYQVHVRDNRLDDIVNLHTKECTCKEFDSLGIPCS 145

Query: 141 HAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           HAIV A+E NIP+  LC+ +Y V  LM AYAE
Sbjct: 146 HAIVVAKERNIPIHRLCNRFYIVDSLMTAYAE 177

[Close]

BLAST of Spg032667 vs. NCBI nr
Match: XP_038891632.1 (uncharacterized protein LOC120081024 [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 6.5e-33
Identity = 76/141 (53.90%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 32  MTSNSAECFNTLTVEARLLPIMCLLEN----------------------------NRMAS 91
           M SNSAECFN+LT E RL+PI+CL+E+                             R+AS
Sbjct: 1   MISNSAECFNSLTKEYRLMPIVCLIEHVRGMLQSWFYEQRNYWASRTTLHSNYCETRLAS 60

Query: 92  ECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCSHAIVAAREHNI 145
           E  KGR+YRVE IDCY+VHV + RLD I+NL ++ECTC++F+SL IPCSHAIVAARE NI
Sbjct: 61  ETDKGRRYRVESIDCYRVHVRNNRLDGIINLHTKECTCKEFESLGIPCSHAIVAARERNI 120

[Close]

BLAST of Spg032667 vs. NCBI nr
Match: XP_038887220.1 (uncharacterized protein LOC120077410 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-32
Identity = 78/152 (51.32%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 21  RAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNR-------------------- 80
           R +Q++ RYDNMTSNS ECFN  T E R+LPI  LLE  R                    
Sbjct: 150 RCYQSENRYDNMTSNSVECFNAFTKEPRVLPITLLLEYTRGLLQGWFHDRQIVWSNSTSP 209

Query: 81  --------MASECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCS 140
                   M  EC+K RQ RV PIDCY+ HV DGRLD I++L ++EC+C++FQ LEI CS
Sbjct: 210 HPISAEEIMGLECEKSRQCRVNPIDCYRFHVKDGRLDGIISLNTRECSCKQFQCLEISCS 269

Query: 141 HAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           HAIVAARE NI    LCS++YSV  L+ AYAE
Sbjct: 270 HAIVAARERNINPFTLCSKFYSVDSLVIAYAE 301

[Close]

BLAST of Spg032667 vs. ExPASy TrEMBL
Match: A0A5A7VLR6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001290 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 61/152 (40.13%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 21  RAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNR-------------------- 80
           R H    RY+ MT+N AE  N++  E R LPI   LEN R                    
Sbjct: 279 RVHCLGRRYNMMTTNIAESMNSILKEPRDLPIASFLENVRALLQRWFWERREEGIKVTST 338

Query: 81  --------MASECKKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCS 140
                   +  + +     +V PIDCY+ HV D   +++VNLQ++ECTC++FQ  ++PCS
Sbjct: 339 LTKWAKLVIQKKQEGALTMKVNPIDCYQFHVKDLNKEEVVNLQTKECTCKEFQVEQLPCS 398

Query: 141 HAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           HAI AAR+HNI + +LC+ YY+  CL+AAYAE
Sbjct: 399 HAIAAARDHNINVYSLCANYYTNECLLAAYAE 430

[Close]

BLAST of Spg032667 vs. ExPASy TrEMBL
Match: A0A5A7TUX4 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001790 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.3e-22
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 14  MSVWISGRAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNR------------- 73
           M+ W   R H    RY+ MT+N AE  N++  E R LPI+  LEN R             
Sbjct: 191 MARWF--RVHCPGRRYNMMTTNIAESMNSILKEPRDLPIVSFLENVRALLQRWFWERREE 250

Query: 74  ---MASECKKGRQ------------YRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQ 133
              + S   K  +             +V PIDCY+ HV D   +++VNLQ++ECTC++FQ
Sbjct: 251 GIKVTSTLTKWAELVIQKKQEGDLTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTCKEFQ 310

Query: 134 SLEIPCSHAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           + ++PCSHAI AAR+ NI + +LC+ YY+  CL+AAYAE
Sbjct: 311 AEQLPCSHAIAAARDRNINVYSLCANYYTNECLLAAYAE 347

[Close]

BLAST of Spg032667 vs. ExPASy TrEMBL
Match: A0A5A7SMC5 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001930 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-22
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 21  RAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNRMASEC--------------- 80
           R H    RY+ +T+N AE  N++  E R LPI   LEN+R   +C               
Sbjct: 474 RIHCPGRRYNMITTNIAESMNSILKEPRDLPIASFLENDRALLQCWFWECREEGIKVTST 533

Query: 81  -------------KKGRQYRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCS 140
                        +     +V PIDCY+ HV D   +++VNLQ++ECTC++FQ+ ++PCS
Sbjct: 534 LTKWAELVIQKKQEGALTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTCKEFQAEQLPCS 593

Query: 141 HAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           H I AAR+ NI + +LC+ YY+  CL+AAYAE
Sbjct: 594 HVIAAARDRNINVYSLCANYYTNECLLAAYAE 625

[Close]

BLAST of Spg032667 vs. ExPASy TrEMBL
Match: A0A5A7UML9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00820 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.3e-22
Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 21  RAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNR----------------MASE 80
           R H    RY+ MT+N AE  N++  E R LPI   LEN R                + S 
Sbjct: 578 RVHCPGRRYNMMTTNIAESMNSILKEPRDLPIASFLENVRALLQRWFWERREEGIKVTST 637

Query: 81  CKKGRQ------------YRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCS 140
             K  +             +V PIDCY+ HV D   +++VNLQ++ECTC++FQ+ ++PCS
Sbjct: 638 LTKWAELVIQKKQEGPLTMKVNPIDCYQFHVKDLNKEEVVNLQTKECTCKEFQAEQLPCS 697

Query: 141 HAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           HAI AAR+ NI + +LC+ YY+  CL+AAYAE
Sbjct: 698 HAIAAARDRNINVYSLCANYYTNECLLAAYAE 729

[Close]

BLAST of Spg032667 vs. ExPASy TrEMBL
Match: A0A5A7TIQ3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00720 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.3e-22
Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 21  RAHQTKTRYDNMTSNSAECFNTLTVEARLLPIMCLLENNR----------------MASE 80
           R H    RY+ MT+N AE  N++  E R LPI   LEN R                + S 
Sbjct: 467 RVHCPGRRYNMMTTNIAESMNSILKEPRDLPIASFLENVRALLQRWFWEHREEGIKLTST 526

Query: 81  CKKGRQ------------YRVEPIDCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCS 140
             K  +             +V PIDCY+ HV D   +++VNLQ++ECTC++FQ+ ++PCS
Sbjct: 527 LTKWTELVIQKKQEGALTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTCKEFQAKQLPCS 586

Query: 141 HAIVAAREHNIPMDALCSEYYSVRCLMAAYAE 145
           HAI AAR+ NI + +LC+ YY+  CL+AAYAE
Sbjct: 587 HAIAAARDRNINVYSLCANYYTNECLLAAYAE 618

[Close]

BLAST of Spg032667 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 45.4 bits (106), Expect = 6.1e-05
Identity = 24/67 (35.82%), Postives = 31/67 (46.27%), Query Frame = 0


Query: 77  DCYKVHVGDGRLDDIVNLQSQECTCRKFQSLEIPCSHAIVAAREHNIPMDALCSEYYSVR 136
           D +KV     + + IV L    CTCRKFQS + PC HA+    +  I       E Y+V 
Sbjct: 621 DSFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVE 680

Query: 137 CLMAAYA 144
                YA
Sbjct: 681 QYCKTYA 687

The following BLAST results are available for this feature:

BLAST of Spg032667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902409.1	3.2e-40	57.69	uncharacterized protein LOC120089049 [Benincasa hispida]	[more]
XP_038891686.1	7.4e-37	56.00	uncharacterized protein LOC120081080 [Benincasa hispida]	[more]
XP_038895865.1	9.7e-37	53.29	uncharacterized protein LOC120084035 [Benincasa hispida]	[more]
XP_038891632.1	6.5e-33	53.90	uncharacterized protein LOC120081024 [Benincasa hispida]	[more]
XP_038887220.1	1.4e-32	51.32	uncharacterized protein LOC120077410 [Benincasa hispida]	[more]

BLAST of Spg032667 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLR6	2.5e-22	40.13	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A5A7TUX4	4.3e-22	40.25	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]
A0A5A7SMC5	5.6e-22	38.82	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A5A7UML9	7.3e-22	40.79	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4...	[more]
A0A5A7TIQ3	7.3e-22	40.79	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]

BLAST of Spg032667 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64260.1	6.1e-05	35.82	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 97..124 e-value: 1.4E-7 score: 41.2
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 79..119 e-value: 4.3E-7 score: 29.5
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 79..122 score: 10.051597
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032667.1	Spg032667.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding