Spg032600 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032600
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3
Location	scaffold11: 8535020 .. 8536676 (+)
RNA-Seq Expression	Spg032600
Synteny	Spg032600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTGTAGTTTGTCTGTTTGTTTGTTTCAGATTGTTTGTTTTCTCTAGCTGTAAGGAATTTTCATTCTTGTTTTCCTTGAAATTTTGTGTCTCTCTGCTGTACTGTCACAAAATTGAATTATGAGAGAGAGAGAGAGAGAGAGGCTGACAAAAGTTTCAAAGTGATTGCCTGTAAATCCCAAATCATTGATCAATTTCTTTTTCGTTTTGTTTTGTTTTATTGACGAATCATGAATTTGTTTTCCTCGAAAGTGGTAGAAAAAGTTGGTTCTAAATCGCTCTTCTTTTTGACATTAAACTGAGTGATGGGAATAAAATCTTCTGATGGGGAATCGACAAAAGGTCGTGTTAATTTGTGAAAGGGGATTATGGATTTGGGAATCTTGTGAGAGGAGAAAAGGGCACCTGAAGAATCATGAAGGAGGCCCAGCTGAAACAGCCGATTGTGATCATAATTGAACCTTTGATTGTGTGTTCAAGGCTGATATCGCCCCTTTGTTGTTGGTGGTTTGCTCTCTCTTTCACCCAAAATAGCTCTAGAATTGGGCCTTTTATCAGTGTCATTATCATGGCTCCTCCAACTGTTGCTATGGTTCCCACCAACTTGGCTTGGCTTCTGATGCTTTTGATTTTTACCTTCTCGAGCCTGAAAAAGTATGTGTTGGATTTTAGGAACTTCAATTCATGTTTTAGAGAGGGAGAGATTGGGTTTGGACTGTGTGGTTTGGTGACCAAAAATGGATGTGCTTATTTACCATCTGAATCGGCTTTTAGCACTGGAGGACGAGTATTAGATCCATTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCCCTCATTTGTGCTCAAAATTGGATTCAATCTAAACCTCTTGATGACATGAGTGAAGAAATTGATGGAGCTGAAGAAATTGATGAAGGTAAGATTAATGAATGACATGTCTTGTCTTCAAAAATTGTTTATCACATTGTTTGCATTTTATCAAGTTAATTGTTTTTCTTTTTCTTGTGTCTAGAACTCACAAACATACGCAATGAGATGGAAGTTGCCTTTGAAAACTTGAGCGGTTCTAAATTTCTACTCTCAAATTTCATTTATCTAGTTTATTTATATGAATTTAATTTTATGTTGAACTTCAAGTAACAATTCTTGTTTTTGTTTTAGCCTCTTGAAGTCTAACAATGGAGCTGGAGTTGTATCGAGAATGACTTTTTGGGGTAAACTTGTTCATCCCTTCCTTTCTGGGGTAATCTTTTGTTTTTGTTTTATGCATTTTGATATATGAATTTATAGGTATATTGAAGGTACTAGATGATAAATGGATTCAAGTTGTCTTCGAGCCACATGAATTGAAAGTTGGTGGTTTAGAGTTTCCATATGGTGGCAAAAGCGAGGTGCAGTGAATATGACTGCCAAGGGTTCTTCAGGGCAAAATGACTGAAGGATGTCGAGCCAAAATCACTTTGAAGATTTTTTTATTTTTTGTAATTATGCTAGATTTCATGAGTTAGTTTTATAGATCTGTTTTAATTTCCATTGTTGTTGGAATGTGTTTTATTTCAAACTAGAATGAATGTGTTTTGTAAATGAGAAATTGAAAATCAAAATAATTATGAATGATACTTAAA

mRNA sequence

ATGAAGGAGGCCCAGCTGAAACAGCCGATTGTGATCATAATTGAACCTTTGATTGTGTGTTCAAGGCTGATATCGCCCCTTTGTTGTTGGTGGTTTGCTCTCTCTTTCACCCAAAATAGCTCTAGAATTGGGCCTTTTATCAGTGTCATTATCATGGCTCCTCCAACTGTTGCTATGGTTCCCACCAACTTGGCTTGGCTTCTGATGCTTTTGATTTTTACCTTCTCGAGCCTGAAAAAGTATGTGTTGGATTTTAGGAACTTCAATTCATGTTTTAGAGAGGGAGAGATTGGGTTTGGACTGTGTGGTTTGGTGACCAAAAATGGATGTGCTTATTTACCATCTGAATCGGCTTTTAGCACTGGAGGACGAGTATTAGATCCATTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCCCTCATTTGTGCTCAAAATTGGATTCAATCTAAACCTCTTGATGACATGAGTGAAGAAATTGATGGAGCTGAAGAAATTGATGAAGGTATATTGAAGGTACTAGATGATAAATGGATTCAAGTTGTCTTCGAGCCACATGAATTGAAAGTTGGTGGTTTAGAGTTTCCATATGGTGGCAAAAGCGAGGTGCAGTGA

Coding sequence (CDS)

ATGAAGGAGGCCCAGCTGAAACAGCCGATTGTGATCATAATTGAACCTTTGATTGTGTGTTCAAGGCTGATATCGCCCCTTTGTTGTTGGTGGTTTGCTCTCTCTTTCACCCAAAATAGCTCTAGAATTGGGCCTTTTATCAGTGTCATTATCATGGCTCCTCCAACTGTTGCTATGGTTCCCACCAACTTGGCTTGGCTTCTGATGCTTTTGATTTTTACCTTCTCGAGCCTGAAAAAGTATGTGTTGGATTTTAGGAACTTCAATTCATGTTTTAGAGAGGGAGAGATTGGGTTTGGACTGTGTGGTTTGGTGACCAAAAATGGATGTGCTTATTTACCATCTGAATCGGCTTTTAGCACTGGAGGACGAGTATTAGATCCATTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCCCTCATTTGTGCTCAAAATTGGATTCAATCTAAACCTCTTGATGACATGAGTGAAGAAATTGATGGAGCTGAAGAAATTGATGAAGGTATATTGAAGGTACTAGATGATAAATGGATTCAAGTTGTCTTCGAGCCACATGAATTGAAAGTTGGTGGTTTAGAGTTTCCATATGGTGGCAAAAGCGAGGTGCAGTGA

Protein sequence

MKEAQLKQPIVIIIEPLIVCSRLISPLCCWWFALSFTQNSSRIGPFISVIIMAPPTVAMVPTNLAWLLMLLIFTFSSLKKYVLDFRNFNSCFREGEIGFGLCGLVTKNGCAYLPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSEVQ

Homology

[Close]

BLAST of Spg032600 vs. NCBI nr
Match: ACX85638.1 (putative transposase [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-21
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEG 170
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDEG
Sbjct: 616 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEG 672

[Close]

BLAST of Spg032600 vs. NCBI nr
Match: ADN33674.1 (transposase [Cucumis melo subsp. melo])

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-21
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEG 170
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDEG
Sbjct: 283 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEG 339

[Close]

BLAST of Spg032600 vs. NCBI nr
Match: KAA0026183.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILK 172
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDE  + 
Sbjct: 526 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEEFIN 585

Query: 173 VLDDKWIQVVFE 185
           +   K ++  FE
Sbjct: 586 I--GKEMEAAFE 595

[Close]

BLAST of Spg032600 vs. NCBI nr
Match: TYK11242.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILK 172
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDE  + 
Sbjct: 37  VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEEFIN 96

Query: 173 VLDDKWIQVVFE 185
           +   K ++  FE
Sbjct: 97  I--GKEMEAAFE 106

[Close]

BLAST of Spg032600 vs. NCBI nr
Match: TYK30761.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILK 172
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDE  + 
Sbjct: 498 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEEFIN 557

Query: 173 VLDDKWIQVVFE 185
           +   K ++  FE
Sbjct: 558 I--GKEMEAAFE 567

[Close]

BLAST of Spg032600 vs. ExPASy Swiss-Prot
Match: Q941D3 (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP8 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 169 GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSEVQ 205
           G LK LD +W+QV+FEP E+KVG LEF YG +SEV+
Sbjct: 177 GKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVK 212

[Close]

BLAST of Spg032600 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.6e-05
Identity = 36/127 (28.35%), Postives = 62/127 (48.82%), Query Frame = 0


Query: 37  TQNSSRIGP-----------FISVIIMAPPTVAMVPTNLAWLLMLLIFTFSSLKKYVLDF 96
           T NS+ + P           ++S I  + P+++ +   L   LM  I  F  L+ + L+ 
Sbjct: 614 TDNSAAVTPPNGDELLDFDIYLSEIATSQPSISELEQYLEEALMPRIQDFEILEWWKLNT 673

Query: 97  RNFNSCFREGEIGFGLCGLVTKNGCAYLPSESAFSTGGRVLDPFRSSLTPQTAEALICAQ 153
             F +  +       +   +  +G +     SA +TG ++LD +RSSL P+T EAL CA+
Sbjct: 674 IKFPTLSKMARDVLAIPMSMVSSGSSIF---SATATGSQMLDDYRSSLRPETVEALFCAK 733

[Close]

BLAST of Spg032600 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 6.0e-05
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 115 SESAFSTGGRVLDPFRSSLTPQTAEALICAQNWI 149
           SESAFS GGRV+DP+R+ L  +  EALIC ++W+
Sbjct: 718 SESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751

[Close]

BLAST of Spg032600 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.0e-05
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 115 SESAFSTGGRVLDPFRSSLTPQTAEALICAQNWI 149
           SESAFS GGRV+DP+R+ L  +  EALIC ++W+
Sbjct: 687 SESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

[Close]

BLAST of Spg032600 vs. ExPASy TrEMBL
Match: E5GB32 (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEG 170
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDEG
Sbjct: 283 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEG 339

[Close]

BLAST of Spg032600 vs. ExPASy TrEMBL
Match: D0UIX2 (Putative transposase OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEG 170
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDEG
Sbjct: 616 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEG 672

[Close]

BLAST of Spg032600 vs. ExPASy TrEMBL
Match: A0A5A7U1Q3 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00550 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILK 172
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDE  + 
Sbjct: 308 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEEFIN 367

Query: 173 VLDDKWIQVVFE 185
           +   K ++  FE
Sbjct: 368 I--GKEMEAAFE 377

[Close]

BLAST of Spg032600 vs. ExPASy TrEMBL
Match: A0A5A7VA60 (Putative aspartyl aminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00370 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILK 172
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDE  + 
Sbjct: 108 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMNEEIDGAEEIDEEFIN 167

Query: 173 VLDDKWIQVVFE 185
           +   K ++  FE
Sbjct: 168 I--GKEMEAAFE 177

[Close]

BLAST of Spg032600 vs. ExPASy TrEMBL
Match: A0A5D3E590 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001030 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 113 LPSESAFSTGGRVLDPFRSSLTPQTAEALICAQNWIQSKPLDDMSEEIDGAEEIDEGILK 172
           +PSESAFSTGGRVLD FRSSLTPQTAEALICAQNWIQSKPLDDM+EEIDGAEEIDE  + 
Sbjct: 498 VPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEEFIN 557

Query: 173 VLDDKWIQVVFE 185
           +   K ++  FE
Sbjct: 558 I--GKEMEAAFE 567

[Close]

BLAST of Spg032600 vs. TAIR 10
Match: AT5G19940.1 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-07
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 169 GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSEVQ 205
           G LK LD +W+QV+FEP E+KVG LEF YG +SEV+
Sbjct: 177 GKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVK 212

[Close]

BLAST of Spg032600 vs. TAIR 10
Match: AT5G19940.2 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-07
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 169 GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSEVQ 205
           G LK LD +W+QV+FEP E+KVG LEF YG +SEV+
Sbjct: 177 GKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVK 212

The following BLAST results are available for this feature:

BLAST of Spg032600 vs. NCBI nr


Match Name	E-value	Identity	Description
ACX85638.1	5.8e-21	94.74	putative transposase [Cucumis melo]	[more]
ADN33674.1	5.8e-21	94.74	transposase [Cucumis melo subsp. melo]	[more]
KAA0026183.1	7.6e-21	77.78	putative transposase [Cucumis melo var. makuwa]	[more]
TYK11242.1	7.6e-21	77.78	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis...	[more]
TYK30761.1	7.6e-21	77.78	putative transposase [Cucumis melo var. makuwa]	[more]

BLAST of Spg032600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q941D3	1.4e-06	63.89	Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thalia...	[more]
Q75HY5	4.6e-05	28.35	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]
P08770	6.0e-05	58.82	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
P03010	6.0e-05	58.82	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]

BLAST of Spg032600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GB32	2.8e-21	94.74	Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
D0UIX2	2.8e-21	94.74	Putative transposase OS=Cucumis melo OX=3656 PE=4 SV=1	[more]
A0A5A7U1Q3	3.7e-21	77.78	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180...	[more]
A0A5A7VA60	3.7e-21	77.78	Putative aspartyl aminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3E590	3.7e-21	77.78	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343...	[more]

BLAST of Spg032600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19940.1	1.0e-07	63.89	Plastid-lipid associated protein PAP / fibrillin family protein	[more]
AT5G19940.2	1.0e-07	63.89	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 114..148 e-value: 8.7E-9 score: 35.1
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 114..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032600.1	Spg032600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004177	aminopeptidase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0008270	zinc ion binding