Spg032472 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032472
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcription factor MYB34
Location	scaffold2: 29591085 .. 29595001 (+)
RNA-Seq Expression	Spg032472
Synteny	Spg032472

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTCCTAGAGTCGATCCTCAAGTTGACCCACAGAATCGTAGAAGGGAGCAAAATGGTGGGAGAATTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCCAATCTATATTGTTGAAGACCGCAATAGAGTAATAAGGCACTATGCTTTACCTGTTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCACCGATAGATGCTCCACAATTTGAACTTAAACTAGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTAATCGAACTCGATAAAGCGTTATTTGAGTAATTCAGTAATTTGGTTATTAAATAATCGAGTTTGCATTAATAAACCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGAACTAGTATGTGGGGACATACGGGGATCAGTGTTCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGGCCCACCTTGTATTCGATACAGATGCAATGGTCCAAAGCATCCATGTAGGAGACATGTGGGTGGGGGTATCCTATGCAATGGGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACCCCTTTCAGGAGGGATTGTCCTTAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCAAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTTCTTGTTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTAATTCCGGGGCTTGAACAAAGGCGCGCCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTAATCGATCTCAATAAAGTGTTATTTGAGTAATTTAGTAATTTGGTTATTGAATAATCGAGTTTGCATTAATAAACCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGGACTAGTATGTGGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACAAGCGGGTGGGGGTATCCTATGCAATAAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGCCTGTTATGAACCCCTTCCAGGAGGGACTGTCCTTAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGATAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCTAGGGCTTGAACAAAGGCGCGCCGTCCTCTCCTAGCCTGAGAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCTTGGTCAATATCCGTGGACACAGAAATATTCTATAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCAACAGTTAACGAATGTTGACTAAACTTGGTCAATGAGTTTGGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGAGACTTGAGGCAATTAAGTATAAATTGTAAATTGAAAGTGTTCAATTTATTTGGGGAATCATATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTTAATATAATTTTTGAATTAATTAATTCTTGAGAGAAAGTATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAGTTAGAGACATTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGAAATTAATTAGTTATGGAATTAATTAATTATTTATTAAAATTAGAGACTTTTTCCTATTAGGAAAAGGTCTTCCTTTTCGGACATTTTTTATTAATATTATTTATTTTTAAACTTATTAGTGAAATAAGACTGCATTGAAACTTATTATTACAATATTGTAGTTTAAAATCCACGTTAGTAGATCGTCTCTTCAAGAGACGACCTGCTGACGTGGCAAATTCGAAAAACGCGCTTATCAGATGTTTAAAAAAAACATTTTTTTAATGTAGCGCGTGTTATCAAACTAAATGGTCTATTGCCATATTGGAAAACGGCCGGCCCTGCATCCACATGTTTGCGAGTTCGAGCTGTGCAAAACGCAATCTTTAAATTTTTTTTTTTTTTTCCGTTTTTCTTTTCCGCCTTTTCCTTCTCTTTTTCCTAATTTTCTTTTCCGTTTTCTTTCTGCATTTTCCTTACTTTTTTTTTCATTCCCTTCTTGAAATCAAATAAGTAATGACATTTTTTTTAAATGTTTTAAACAAATTGATTTTTTTAGATTACAATTTATTTCTTTTTCTCGTACTTGAAGCAACTAAAATTTAATTAAGTATTAAAATCAAATAAGTAGTTGTATTGGTTTCAATGGTTTAAATAAACTGATTATCAAATTACAATTTATTCTCTTTTCTTGAATTAATTAAAATTTAAATAGTTGTAAAAAAAATTTGAAGTTTAAATAAGTGTTAAAATCAAATAAGTAATTACATTTTACTAATGTTTTAAACAAATTGAATATTATATTATAATTTAGTTTCTTTTCAAAAACCAATTAAAATTTAATTAAGTATTAATTAATTAAACATTTTATTTTAAATTCACATATATATTGATTTAGAAAAAATATACGTATAGGAAAATTAAAATTAATTCTAATTAAAAAAAAGCTATAATAGTTTAATTTAGTTTAATTTACTTAGTTAAATTTCAATTACTTTAAAGAAAAGAAAATGAATTGTAATATAAAAATTCAATTTCTTTAAAACATTTAAAAAGATGAAATTACTTATTTCTTGAGGTGAAGGAAAATGCAGAAAAAAAACGGAAAAGAAAATTAGGAAAAAGAGAAGGAAAAGAAAAAGGGAAAAAAAAAAAGAAAGACTGCGTTTTGCGCAGCTCGAACTCGCGAACATGTGGATGCAGGGCCGATAGTTTTCCAATATGGCAAGAGACCATTTGGTTTAAAAGCATGCATAGTTCGTTTCTTGAAGAGACGACCTACATTAAAAAAATGTTTTTTTTAAACATCTGATAAGCGCGTTTTTCGAATTTGCCACGTCAGGAATAGGTTTTTATGAGATAAAAATCGGAGAAATTGCGACGCTGTCACGATTACAGCACGCGTTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCATGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCTGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAA

mRNA sequence

ATGGAACCTCCTAGAGTCGATCCTCAAGTTGACCCACAGAATCGTAGAAGGGAGCAAAATGGTGGGAGAATTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCCAATCTATATTGTTGAAGACCGCAATAGAGTAATAAGGCACTATGCTTTACCTGTTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCACCGATAGATGCTCCACAATTTGAACTTAAACTAGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGAATAGGTTTTTATGAGATAAAAATCGGAGAAATTGCGACGCTGTCACGATTACAGCACGCGTTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCATGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCTGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAA

Coding sequence (CDS)

ATGGAACCTCCTAGAGTCGATCCTCAAGTTGACCCACAGAATCGTAGAAGGGAGCAAAATGGTGGGAGAATTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCCAATCTATATTGTTGAAGACCGCAATAGAGTAATAAGGCACTATGCTTTACCTGTTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCACCGATAGATGCTCCACAATTTGAACTTAAACTAGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGAATAGGTTTTTATGAGATAAAAATCGGAGAAATTGCGACGCTGTCACGATTACAGCACGCGTTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCATGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCTGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAA

Protein sequence

MEPPRVDPQVDPQNRRREQNGGRIPPVPLVPQQENPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVVGFYALKLVDRIGFYEIKIGEIATLSRLQHALEIRNRTVQGCWAVRFMRSGWAGTNLFLFSWNLARFVIFVAGSKWFGRSRPVFGAAEGL

Homology

[Close]

BLAST of Spg032472 vs. NCBI nr
Match: XP_017617646.1 (PREDICTED: uncharacterized protein LOC108462175 [Gossypium arboreum])

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-07
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 35  NPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVVGFYALKLVDRIGFYEI 94
           NPI +V+DR+R IR Y +P+F  LNPGI  P I+APQFELKLV+ F  L+ V +      
Sbjct: 19  NPILLVDDRDRAIRQYVVPLFNELNPGIRIPNIEAPQFELKLVM-FQMLQTVGQFSALGR 78

Query: 95  KIGEIATLSRL 106
           ++ EI  +  L
Sbjct: 79  RVAEIHEVDAL 88

[Close]

BLAST of Spg032472 vs. NCBI nr
Match: XP_030483354.1 (uncharacterized protein LOC115699947 [Cannabis sativa])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-06
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 29 LVPQQENPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVVG 80
          + PQ  NPI + +DR R I+ YA P+F  LNPGI+ P I APQFELK + G
Sbjct: 10 VAPQIVNPIILADDRARAIKEYAAPMFNELNPGIVRPEIQAPQFELKPIQG 60

[Close]

BLAST of Spg032472 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-06
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 33 QENPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVVGFYALKLVDRIG 91
          + NPI + +DR R IR YA P+F  LNPGI+ P I AP FELK V+ F  L+ V + G
Sbjct: 13 EANPIALADDRTRAIREYAAPMFNELNPGIVRPEIQAPHFELKPVM-FQMLQTVGQFG 69

[Close]

BLAST of Spg032472 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MEPPRVDPQVDP--QNRRREQNGGRIP------PVPLVPQQENPIYIVEDRNRVIRHYAL 60
           +E   +DP+++   + RR+EQ   +         V  V  + NPI + +DR R IR YA 
Sbjct: 8   LELAPIDPEIERTFRQRRKEQKAKKRCNMADGFEVGGVHNEANPIALADDRARAIREYAA 67

Query: 61  PVFQTLNPGILEPPIDAPQFELKLVVGFYALKLVDRIG 91
           P+F  LNPGI+ P I AP FELK V+ F  L+ V + G
Sbjct: 68  PMFNELNPGIVRPEIQAPHFELKPVM-FQMLQTVGQFG 104

[Close]

BLAST of Spg032472 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 29 LVPQQENPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVV 79
          +  Q  NPI + +DR R IR YA P+F  LNPGI+ P I APQFELK V+
Sbjct: 5  IAQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVM 54

[Close]

BLAST of Spg032472 vs. ExPASy TrEMBL
Match: A0A6P4MQY3 (uncharacterized protein LOC108462175 OS=Gossypium arboreum OX=29729 GN=LOC108462175 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-07
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 35  NPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVVGFYALKLVDRIGFYEI 94
           NPI +V+DR+R IR Y +P+F  LNPGI  P I+APQFELKLV+ F  L+ V +      
Sbjct: 19  NPILLVDDRDRAIRQYVVPLFNELNPGIRIPNIEAPQFELKLVM-FQMLQTVGQFSALGR 78

Query: 95  KIGEIATLSRL 106
           ++ EI  +  L
Sbjct: 79  RVAEIHEVDAL 88

[Close]

BLAST of Spg032472 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.9e-06
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 29 LVPQQENPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVV 79
          +  Q  NPI + +DR R IR YA P+F  LNPGI+ P I APQFELK V+
Sbjct: 5  IAQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVM 54

[Close]

BLAST of Spg032472 vs. ExPASy TrEMBL
Match: A0A2P5A9Q1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_354260 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 6  VDPQVDP--QNRRREQNGG--RIPPVPLVPQQENPIYIVEDRNRVIRHYALPVFQTLNPG 65
          +DP+V+   + RRREQ  G   +  +      +N   + +DR+R IR YA+P+   LNPG
Sbjct: 12 LDPEVERIFRVRRREQQQGLAGLEEMAEAAGTDNAAAMADDRDRAIREYAIPILNGLNPG 71

Query: 66 ILEPPIDAPQFELKLVVGFY 82
          I+ P I APQFELK V+  Y
Sbjct: 72 IVRPEIQAPQFELKPVMELY 91

[Close]

BLAST of Spg032472 vs. ExPASy TrEMBL
Match: A0A5B6U8V7 (Transcription factor MYB34 OS=Gossypium australe OX=47621 GN=EPI10_009286 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 35 NPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVV 79
          N I + ++R+R IR Y+LP+F  LNPGI+ P I+AP+FELK+V+
Sbjct: 15 NSIIVADNRDRAIRQYSLPLFSELNPGIVRPEIEAPKFELKVVM 58

[Close]

BLAST of Spg032472 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 33 QENPIYIVEDRNRVIRHYALPVFQTLNPGILEPPIDAPQFELKLVVGFYALKLVDRIG 91
          + NPI + +DR R IR YA P+F  LN GI+ P I AP FELK V+ F  L+ V + G
Sbjct: 11 EANPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVM-FQMLQTVGQFG 67

The following BLAST results are available for this feature:

BLAST of Spg032472 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_017617646.1	5.1e-07	47.89	PREDICTED: uncharacterized protein LOC108462175 [Gossypium arboreum]	[more]
XP_030483354.1	2.5e-06	54.90	uncharacterized protein LOC115699947 [Cannabis sativa]	[more]
XP_030497803.1	9.6e-06	51.72	uncharacterized protein LOC115713460 [Cannabis sativa]	[more]
XP_030508936.1	1.6e-05	39.80	uncharacterized protein LOC115723589 [Cannabis sativa]	[more]
ERM93404.1	1.6e-05	56.00	hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]	[more]

BLAST of Spg032472 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P4MQY3	2.5e-07	47.89	uncharacterized protein LOC108462175 OS=Gossypium arboreum OX=29729 GN=LOC108462...	[more]
U5CUI2	7.9e-06	56.00	Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT...	[more]
A0A2P5A9Q1	1.0e-05	42.50	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_354260 PE...	[more]
A0A5B6U8V7	3.9e-05	54.55	Transcription factor MYB34 OS=Gossypium australe OX=47621 GN=EPI10_009286 PE=4 S...	[more]
U5CUK7	6.7e-05	50.00	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640...	[more]

BLAST of Spg032472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032472.1	Spg032472.1	mRNA