Spg031406 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg031406
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S12
Locationscaffold11: 37704391 .. 37709523 (+)
RNA-Seq ExpressionSpg031406
SyntenySpg031406
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGAGGCACATAATAATGAGGCTCGTGTGGGACCTCTCTCGGCGTCATCTTAACGGCGTCGAGAGATGGCCCATCTCCCTCGACGCCATTAAGATGGCGTCGAGAGAGAGTGGACTTAAATCCCTAATTCTCTCTTTGTCTTCCTCATTCGAACGATTAGGAGAAAACCAGCCCTTCCTCGTGCCTCCCTGCTTGCTGTCGCCCCGTCGTTCGCTCCGCCTCCGGCTGTCGTCCGGCCGTCTCGCTCCGCCTCCGGCCGTCATCCCTCTCCGCCTCCAGTTGTCGCCCCTCCGTCTCTTTTCAATCTCTCCTTTTCTCTTTCCGAACCCTTATTTCATCTCCTTTTCTCGTTAATGCTTGCTCCATTCATAGTTTAGATGTGTTAATTTATTCGATTTTGAGTTTCCCTTAATCTTTATAAACGTTCTATGTTTTGTTTAAATTTGCTGGTCTTTGCTTTTAATCTGTATAAATGTTCCATTTTTATTTTATGAATCTTTGTTTTTCTATGTTGTTCTCGGTGCTATTGGTATCGTGTTTTTATTTCAAGCAGTGTTTTTTTAAAGCTTGAGGTGCAGTAACGCTAAAGAGCAAAAAATGCTTTTTGTGAAGTGCACTGTATATATAAAAAATATATAGATTTATGTGTAGATGTATGTATACATAAAATTAAACATCCATGGAAATAAAGGATTTATAATAAAGAAAAGGGTATAAGTATAACATATGGAACTTTCAAGGTAAACTGTTAACAAGGTTCAAACTTTATAGTATTAGCGAGAGGAAGAAGAATAGCAGGGAATGCATGGTCTGGAAGTCCATAACTTGTATCAGGAATTTAAGAGTTTTTTGTTCTATGCAACAAATGGAATTTTCATTTGGCATGTTAATTGGAGTTTTACAAGAGATGTGTATTTCCATATTTAAATGAGAAAAAAGTTGATACCTTTTTGGGATCAAAGAAGTTTTGGATTAGAGTATGAAATGAGAATGCTACATTTTTCAAAATAATTCTCCTTCGAAACGAAAATGTGAAGCTCAATTTCGAGTTTCCTTTCGTTCAATTATTTGTTGGCTTGAACTTTCTTGTGAGTCTTGTTAAGTCATTTGTTATCGATCTTTGTTTTATTTATTCCTTACCTCGAACAAGACAATTTAGTGATTTACTGGCTGGGTCTTTGTTATTCTTTTTTATTATTTTGGGTATTAAATAGAGGCCTTAATAAGCAATTAATGTTGCTGTGATGCATATCGAACTGCAGGGTTCCTTTCAAAAGATTTGAAGGTTTAAGATCCAATCTCAAGGTTGGTGGCTAATGTAATAGTATTTTTCTCATCATATCTGCTGTTTGGAATTTCAATCATGGATACCCTTCACTCTCTTTGGTTCTCACATGCTCATTGTTTACTGACACTGACTGTTCCACGTATGCATATTCAAAGTTACGTTCCTTGCCAAAAATGAATACAACTTTGTTGGGATTTCAGTATAGATGTTAGTCAACTTGCATTCGTACAAGTTGTGATCGGTGATTTATGTATGTTTGTGTCACCTGTTCTGTTGCTAAATGGTGTGGAGGAATTAAGTTTGTTATAGTTTGTCCTTTTATAATATTGTGGAAAATTAGGCTCGGAGACTTCAATCCATGAGGCCATAACTTGTAGCATAAAAACATTAATAATCATTGGTTTTGTTTTTGGTTTGTGGAGACTTCACCTTGCATTTAATATTCATTTCGTTTTTTGTTTTTGGTTTTTGAGAATTATGTTTAAAAACACTAAATCCACCCATAAGTTTCTTGGTTTTGATATACTTTTTTTCCCATGTTTTCAAAAATCAAGTCAAGTTATGAGAACTAAAAAAAATGGCTCTCAAAAACTTTTTTATTTTTAGAATTTGGCTAGAAATTCACATGTACCATTCAAAGAGATGAAAATCATGATAAGAAAATTATGGGTGTTAGCATGTTGTGTGTTAGCATGTTGTGTGCCTTGCTTATGTTATGCATGATTTACATGGATATGTTCTCTTAATTCTATGATCTAAGCATGTTGTAAGTTAATTTTGTTGTAGATGAAAATCATGTAGAAGTATGTTGTAAGTTAATGTATAATTCATGAATGACTTCCAAACTTTTTTTTTCTCTAAATATGTCAATACATGTATTTATGCATATCTTTTTTGGGTAGGTTTGACTGAAAGGGTTGTTTGTTGTTATTCAATTCTAAAGTCATGTTGTACTCTTATAAAACATAATTGTGGAGCAATTTTTCTTCAATGATCACACCCCAATTTGTTGCAACGTCAGTCACAACAGGAAGAAAGACTGACATCGTTGACAGATATTATTAAAGGATTCATGGAGTCACGGCGGGACGACACCCAAAATTAGGTATGCCCTCAATTTAAATTTTGCAATTATCTTAATGTAGTATGATTTAATCAATATGTAGATAGTTGTTAATACAAGACCTGACTCGTATGGTGATTGTTGTGGAGTTCTGTTGAATTGAAGTATGAGGGAGTTAACTGAAATATTATAAGAGTGTTATTTTTATGTTTGTAGGTGTTTTAAAAATTTTGGGTTAGCCATATGTATTAGGGGTGAGCATCGGTCGGTCGGGGTCGGTTTTGGCCTCAAACCGACGCCGAACCGACCATGTCGGTTTCCAAAAGTTGGAAACCGACTTTTTTTTGTGCTCAAATTTCGCCGACCGACCGACCGCCAGTCGGTCGGTCGGTTTGGTCGGTTTTAACCGATTGTGACCAGAAGGGAAATGAAGGAGGAGGAGCGAAATGGCAACGACAAAACAGCTGGCGAAACGAAGCTTCAATGGACAGGAACGGCGACATCAACGGCCGACGAAACTTCAAGTTGAAGAAGAAAGAAAACAAACAGAGAATGATGGACGAAAACCAAAAGAAAACCATCGACTGAAAAAAATATAAAGAAATGAAAACCAAAACCAAAAGAAGAAGAAAAAGAAAAGAAAGAAGAGGAAGAGAAGCTTCAACGGAGAAGAAGATAAAAAAAATGCAAGAAGATGAAAAGAGAGGAGAAAAAGTGAGGGGAGAAAGAAAGAGCTTAAAAAAAAATAATAAAATAAATTAATTTTTTTTTTAATATGTATTGGGAAGACCATCGACTAATGGTCTTCCCAAGGCTTGATGGACAGCTGCTGCAGCATGCAGCAGCGCAGCAGACGAGAAAATTTAATTTTTTTTTTTTTTTAAATTCGGTCGGTTTGGTCGGTTCTCGCCATTTTGGACGAGCCGACCGACCGACGGGTCGGTTTTACTTTACGTAAAACCGACCCCCGATCGAAATAATAAGAAAACCGACCGACCGACGTCGTTTCGGTCGGTCGGCTCGGTTTTTCGGGTTGGTTTGCTCACCCCTAATATGTATGTCGTTATGTTGCCGAAATTTCTGGATAGTTGTTAATACTTATTTACATGTTTTACATGTCTTGTTAAAATATTTGCATACTACACCATCTGTTTGAGTTTGATTTCAAGATGAGACCTATCGAAAGTTTTCATTGATATGAGTTTGGATAATAAGTCATTTTTTTTATATTTGGTCTAATGCAGCTAGATGAGCATGATTCTTTCTAAAGGAAAGACTAGGAAAGTTGTTGGGTGGTTTTGTGTTGTAGTTAAGGTATGTTGTGTGTGTTTCTCTTGTACAGAAATTGTTCTATTCCTCTTTTTGTTTTCCAAACCATTTTGTTTACTTGAATATTGAATTTCCATTACCAGGTGTTCGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTATGTTGGTGGAACTAAGGAAGTTTTTTATCTTTAGTTGTCTTTATAGGTTGTTTCCTTGTTGCTGCTGAACATATCGAACAGTCCTGTAATATTTTTCTTTGTTTATTGATTGTAAATATTTTCGTTAAACAGAACATAATTTATGCTTCAATTGTTTAATTATTTATCAAGGGAATTTATGTTTCAATTGTTTAATTAACATTAAAAAAAAAAATTGTTCTATGCTTCAATTGTTCTATCAAGGGAATTTATGTTCCAAGTTTAAAAGGGAATTTCAATTGTTATTATTATTAAAAAAAAAAAAAAAAAAAAAAACCTTCATTATAAGTTCTGTCGACGCCATACACGTGGCGTCGACAGAAACTATCTAGATAGTTTTTGGCGACGCTATGTAGACCGCATCGGCAGAACCCCTTTTTGCCAACTCCATGTGGCGGCATCGACAGAAAATTGCCCGGTTTGCCTCCACGCAATTTTCTCTCGACGCGGTTTTTCAGCACGTCAGGAAAAATGGCTTCTGTCGACTGGTTTCTTTCGACTTTCTTCCTGAAGCACTGAAGTGCGTCGGGAGAACCTCTGCCGACGCCGAATTGGACTTCTACCGACGTTTATGCGCGTCGGGAAAGGGTAAATTTCTTGTAGTGGGTGTTATGAACTCATTTTAACAAGGGATTGTGCTTAAATTTGTATGGGTGAGAGTGGCCAGTTCGCCGAATCAATAAGCTTACCATTTCAGGGGCAAGACCGAGTGGGGGTTGGAAACATAACATTACAAGATGAAATTCACTTCTTCCCCTATTACTTGACCATGCTCCCTAGGGTTCACCCTGTTAAGCCCAGATGGTGCCCAAGCACCCTAGGGTTCACACCGTTAAGCCCATATGGTGCCCGAGCTCCCTAGGGTTCACCCCATTAGGCCCTAGGGAGCCCCAATCAGTGGAAGGAGAACCGCTGGCGACCGACTCAAGTGAGGAAAACCCTAACAGGAAGAGAGGTATAAATGACTCCTCGAAAGCCTGGAATGGGGATCGAAAAACCAAATAGCAAATACTCCTACCCCTTTACTTGATTCAGCCCGCATTATTTGTGACAACCTCTGATTACTGACTTAGGCATCGGAATGTGTGTTGCAAGCACCACACCGGTGTGCAATGTTTGCTCCTAATTTGCAGGTCACGTCTTCTCCATCTTCTACAAATTCACCCCTGGTGTCACGTGA

mRNA sequence

ATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGAGGCACATAATAATGAGGCTCGTGTGGGACCTCTCTCGGCGTCATCTTAACGGCGTCGAGAGATGGCCCATCTCCCTCGACGCCATTAAGATGGCGTCGAGAGAGAGTGGACTTAAATCCCTAATTCTCTCTTTGTCTTCCTCATTCGAACGATTAGGAGAAAACCAGCCCTTCCTCGTGCCTCCCTGCTTGCTGTCGCCCCGTCGTTCGCTCCGCCTCCGGCTGTCGTCCGGCCGTCTCGCTCCGCCTCCGGCCGTCATCCCTCTCCGCCTCCAGTTGGTTCCTTTCAAAAGATTTGAAGGTTTAAGATCCAATCTCAAGATGAGCATGATTCTTTCTAAAGGAAAGACTAGGAAAGTTGTTGGGTGGTTTTGTGTTGTAGTTAAGGTGTTCGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTGTTTCCTTGTTGCTGCTGAACATATCGAACAGTCCTACCGCATCGGCAGAACCCCTTTTTGCCAACTCCATGTGGCGGCATCGACAGAAAATTGCCCGGTTTGCCTCCACGCAATTTTCTCTCGACGCGGTTTTTCAGCACGTCAGGAAAAATGGCTTCTGTCGACTGGTTTCTTTCGACTTTCTTCCTGAAGCACTGAAGTGCGTCGGGAGAACCTCTGCCGACGCCGAATTGGACTTCTACCGACGTTTATGCGCGTCGGGAAAGGCCCAGATGGTGCCCAAGCACCCTAGGGTTCACACCGTTAAGCCCATATGGTGCCCGAGCTCCCTAGGGTTCACCCCATTAGGCCCTAGGGAGCCCCAATCAGTGGAAGGAGAACCGCTGGCGACCGACTCAAGTGAGGAAAACCCTAACAGGAAGAGAGGTCACGTCTTCTCCATCTTCTACAAATTCACCCCTGGTGTCACGTGA

Coding sequence (CDS)

ATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGAGGCACATAATAATGAGGCTCGTGTGGGACCTCTCTCGGCGTCATCTTAACGGCGTCGAGAGATGGCCCATCTCCCTCGACGCCATTAAGATGGCGTCGAGAGAGAGTGGACTTAAATCCCTAATTCTCTCTTTGTCTTCCTCATTCGAACGATTAGGAGAAAACCAGCCCTTCCTCGTGCCTCCCTGCTTGCTGTCGCCCCGTCGTTCGCTCCGCCTCCGGCTGTCGTCCGGCCGTCTCGCTCCGCCTCCGGCCGTCATCCCTCTCCGCCTCCAGTTGGTTCCTTTCAAAAGATTTGAAGGTTTAAGATCCAATCTCAAGATGAGCATGATTCTTTCTAAAGGAAAGACTAGGAAAGTTGTTGGGTGGTTTTGTGTTGTAGTTAAGGTGTTCGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTGTTTCCTTGTTGCTGCTGAACATATCGAACAGTCCTACCGCATCGGCAGAACCCCTTTTTGCCAACTCCATGTGGCGGCATCGACAGAAAATTGCCCGGTTTGCCTCCACGCAATTTTCTCTCGACGCGGTTTTTCAGCACGTCAGGAAAAATGGCTTCTGTCGACTGGTTTCTTTCGACTTTCTTCCTGAAGCACTGAAGTGCGTCGGGAGAACCTCTGCCGACGCCGAATTGGACTTCTACCGACGTTTATGCGCGTCGGGAAAGGCCCAGATGGTGCCCAAGCACCCTAGGGTTCACACCGTTAAGCCCATATGGTGCCCGAGCTCCCTAGGGTTCACCCCATTAGGCCCTAGGGAGCCCCAATCAGTGGAAGGAGAACCGCTGGCGACCGACTCAAGTGAGGAAAACCCTAACAGGAAGAGAGGTCACGTCTTCTCCATCTTCTACAAATTCACCCCTGGTGTCACGTGA

Protein sequence

MGPLSTPLCWRREMGPLSTPLCWRRERHIIMRLVWDLSRRHLNGVERWPISLDAIKMASRESGLKSLILSLSSSFERLGENQPFLVPPCLLSPRRSLRLRLSSGRLAPPPAVIPLRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVSLLLLNISNSPTASAEPLFANSMWRHRQKIARFASTQFSLDAVFQHVRKNGFCRLVSFDFLPEALKCVGRTSADAELDFYRRLCASGKAQMVPKHPRVHTVKPIWCPSSLGFTPLGPREPQSVEGEPLATDSSEENPNRKRGHVFSIFYKFTPGVT
Homology
[Close]
BLAST of Spg031406 vs. NCBI nr
Match: KAG7035048.1 (40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 132 LKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           +K+  I S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 120 VKLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 161

[Close]
BLAST of Spg031406 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. NCBI nr
Match: XP_022960502.1 (40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. NCBI nr
Match: XP_023007085.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. ExPASy TrEMBL
Match: A0A6J1G761 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. ExPASy TrEMBL
Match: A0A5A7UX10 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001740 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 117 LQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           L  VP  +  G  S L    I S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 85  LMTVPSAKTLGEWSGL--CKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. ExPASy TrEMBL
Match: A0A6J1L207 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Sbjct: 105 SEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 139

[Close]
BLAST of Spg031406 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.9e-04
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 115 LRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           +RL  VP  +  G  + L    I S+G  RKVVG  C+VVK FGE+  AL IV KH+ S
Sbjct: 87  VRLLTVPSAKTLGEWAGL--CKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of Spg031406 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.9e-04
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 115 LRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           +RL  VP  +  G  + L    I S+G  RKVVG  C+VVK FGE+  AL IV KH+ S
Sbjct: 87  VRLLTVPSAKTLGEWAGL--CKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of Spg031406 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 42.7 bits (99), Expect = 6.5e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+G  RKVVG  C+V+K FGE+  AL+IV+KH+ S
Sbjct: 109 SEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDS 143

[Close]
BLAST of Spg031406 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 42.7 bits (99), Expect = 6.5e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+G  RKVVG  C+V+K FGE+  AL+IV+KH+ S
Sbjct: 109 SEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDS 143

[Close]
BLAST of Spg031406 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 42.7 bits (99), Expect = 6.5e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 139 SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS 174
           S+G  RKVVG  C+V+K FGE+  AL+IV+KH+ S
Sbjct: 109 SEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDS 143

The following BLAST results are available for this feature:
BLAST of Spg031406 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035048.11.9e-0573.8140S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023512603.15.5e-0582.8640S ribosomal protein S12-like [Cucurbita pepo subsp. pepo][more]
XP_022960502.15.5e-0582.8640S ribosomal protein S12-like [Cucurbita moschata][more]
XP_023007085.15.5e-0582.8640S ribosomal protein S12-like [Cucurbita maxima][more]
XP_038896811.15.5e-0582.8640S ribosomal protein S12-like [Benincasa hispida][more]
BLAST of Spg031406 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg031406 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GQC32.7e-0582.8640S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=... [more]
A0A6J1G7612.7e-0582.8640S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=... [more]
A0A5A7UX102.7e-0563.1640S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5D3BJY52.7e-0582.8640S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1L2072.7e-0582.8640S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1[more]
BLAST of Spg031406 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15930.22.9e-0447.46Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.12.9e-0447.46Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.16.5e-0457.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.36.5e-0457.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.26.5e-0457.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..311

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg031406.1Spg031406.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome