Spg031343 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031343
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold11: 38592442 .. 38596434 (+)
RNA-Seq Expression	Spg031343
Synteny	Spg031343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTATTGTCCATTGTTGCTTCAACGGACTGACGTTGCAAGAAGAAACAGCTTCTATCGTTGCGGGCCAAGAAACATCCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTGTAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGATGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGACTCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGCTTCACTGTCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGTAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACATGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTGAATCGCTTCTACAGCACTAGACGGACCGTTAGCATGTTCGAGCTCACAAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCTATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCAGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAGGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTTTCCCCCCTAACATGAGAAAAGAAGGAAGGAACAACGAAGAGACTATAGAAGAATCTATGGTTGTCAACACAACCCTTCCCAAGTCATCTTTGAAAGAAAAACGACAAACAAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGTTGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGTTTCCTAAGTGTAAGCGACCGGAAGAGATTGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGCTTCGTCCTAAAGGACTTAATTCTTAAGCTAGCTATGGAAGGAAAAATCGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAACAAAAAAAGAATCCTAAGAAACCTCAACCTAAGAGGAAGAAAATTAAAGGGTTTTCTCAACCTCGACAGCCGGTTACTTTGAATGAATTCTTCCCCAAAACTTTCCACAAAAAGGAAAAAGAGAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCGAGAATGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTCCACTCGACATTCAGCTTTCCAAAGGCTAAGTATCTCCACATTGAGGAAAAGTCAGTCTTCAACATCTGTCTTTGATCGCCTCAAAGTAGCAGACGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGCTGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACAAATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGCTGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCTTGCAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGGGCTTTTAAAATGTAAAAACTCCTTATCGTAAGAGTCTAAACTGCATGATGCTCCTAGCCCACACGAGATTAAAAGGTGAGTGCAAAAAAAATTTTGAACTACGTTATGACTTGATCCCTTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAAGGGAAGTGCAACAAATATTGAAGCACGACAATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCAAATGGAAGTTGTGCACCGTTATGAATGTGAGACTATGAGTTGGATGAATAACAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCACCCCAAGTTCGAAGGTTCTCTCACGCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTTGTTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTCGCTACAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACCCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTTCGCTACAATTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACCATTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTTGCTGCAGTTGTCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTGCCTTCCTCCAAGTTCGAGGGTTCTCACGCCGCTCCGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTTTCACGCCGCTTCGCTGTAGTTTCTTCCTCCCAAATTCGAAGGTTCTCACACATTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCTCTCAAAGTTCGAAGGTTGTCACGCGCTTCGCTGCAGTTCCTTTTCTCCAAATTTGAAGGTTCTCACGTCCTTCTCTCCAAGTTCGAAGGTTCTCCCATGCGTCGCTGCAACTCCTTCTCTCCAAGTTCGAAGGAGGTTTTCACGTTGCTTCGTTTCAGTACCTTCTCTTCAAGCTCGAAGGTTCTCCTACGCTTCGTTGTTGTTCCCTCCTCAAAGTTCAAAGGTTCTCCACTACTGTCGTTTCTTCTTCAAGTTGAGAGTTTCTATCGTTCTTTCATCAAGCTCGAAGATTCTATAGATCCATTTAAAAGTTGGGAGGCTTTGCCATTATTTTGTCTCTAAGAGTTGTTGCTCTAACTTTGCTTCATCTTCAAGGTTGACGGTTGACGGCTTCGGCCTCGCTTGATCCTCAAAGTTGGCGGTTGACGGCATCGCTTCATCTCCAAAGTCGACGATTGACGACCTCGCTTCATCTTCAAAGGTTGGCAGTGCAAGTGGGCAAGTGACCAGCCTGCATTCCGCCTGAATCAGGGGTTGATACCACTGCCTGAGGCAAGATGTGAAGGGCGAGACACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGACAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTACCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAAGGGTTGATCACTGCCTGAGGCAAGATGTGAACGGCAAATGA

mRNA sequence

ATGAGTTCTATTGTCCATTGTTGCTTCAACGGACTGACGTTGCAAGAAGAAACAGCTTCTATCGTTGCGGGCCAAGAAACATCCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTGTAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGATGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGACTCAAGTCAAACCCAACCGGTTACTTTGAATGAATTCTTCCCCAAAACTTTCCACAAAAAGGAAAAAGAGAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCGAGAATGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTCCACTCGACATTCAGCTTTCCAAAGGCTAAGTATCTCCACATTGAGGAAAAGTCAGTCTTCAACATCTGTCTTTGATCGCCTCAAAGTAGCAGACGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGCTGTGACAAGAAGCTTCAAAAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCACCCCAAGTTCGAAGGTTCTCTCACGCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTTGTTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTCGCTACAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACCCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTTCGCTACAATTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACCATTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTTGCTGCAGTTGTCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTGCCTTCCTCCAAGTTCGAGGGTTCTCACGCCGCTCCGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTTTCACGCCGCTTCGCTGTAGTTTCTTCCTCCCAAATTCGAAGGTTCTCACACATTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCTCTCAAAGTTCGAAGGTTGTCACGCGCTTCGCTGCAGTTCCTTTTCTCCAAATTTGAAGGTTCTCACGTCCTTCTCTCCAAGTTCGAAGGTTCTCCCATGCGTCGCTGCAACTCCTTCTCTCCAAGTTCGAAGGAGGTTTTCACGTTGCTTCGTTTCAGTACCTTCTCTTCAAGCTCGAAGGTTCTCCTACGCTTCGTTGTTGTTCCCTCCTCAAAGTTCAAAGGTTCTCCACTACTGTCGCAAGATGTGAAGGGCGAGACACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGACAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTACCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAAGGGTTGATCACTGCCTGAGGCAAGATGTGAACGGCAAATGA

Coding sequence (CDS)

ATGAGTTCTATTGTCCATTGTTGCTTCAACGGACTGACGTTGCAAGAAGAAACAGCTTCTATCGTTGCGGGCCAAGAAACATCCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTGTAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGATGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGACTCAAGTCAAACCCAACCGGTTACTTTGAATGAATTCTTCCCCAAAACTTTCCACAAAAAGGAAAAAGAGAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCGAGAATGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTCCACTCGACATTCAGCTTTCCAAAGGCTAAGTATCTCCACATTGAGGAAAAGTCAGTCTTCAACATCTGTCTTTGATCGCCTCAAAGTAGCAGACGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGCTGTGACAAGAAGCTTCAAAAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCACCCCAAGTTCGAAGGTTCTCTCACGCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTTGTTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTCGCTACAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACCCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTTCGCTACAATTGCCTTCCTCCAAGTTCGAAGGTTCTCTCACCATTTTGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCACCTCCAAGTTCGAGGGTTCTCACGTCGCTTTGCTGCAGTTGTCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTGCCTTCCTCCAAGTTCGAGGGTTCTCACGCCGCTCCGCTGCAGTTGCCTTCCTCCAAGTTCGAAGGTTTTCACGCCGCTTCGCTGTAGTTTCTTCCTCCCAAATTCGAAGGTTCTCACACATTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCTCTCAAAGTTCGAAGGTTGTCACGCGCTTCGCTGCAGTTCCTTTTCTCCAAATTTGAAGGTTCTCACGTCCTTCTCTCCAAGTTCGAAGGTTCTCCCATGCGTCGCTGCAACTCCTTCTCTCCAAGTTCGAAGGAGGTTTTCACGTTGCTTCGTTTCAGTACCTTCTCTTCAAGCTCGAAGGTTCTCCTACGCTTCGTTGTTGTTCCCTCCTCAAAGTTCAAAGGTTCTCCACTACTGTCGCAAGATGTGAAGGGCGAGACACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGACAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTGCCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAGGGGTTGATCACTACCTGAGGCAAGATGTGAAGGGCGAGAGACCATCCTTAATTCCGCCTGAATCAAGGGTTGATCACTGCCTGAGGCAAGATGTGAACGGCAAATGA

Protein sequence

MSSIVHCCFNGLTLQEETASIVAGQETSLQGAYTNDKFLVKCNPLFEPDSDVVTVMMTETRTMEERMDEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIADSSQTQPVTLNEFFPKTFHKKEKENFATSYCIDVEEVDNSENGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSLTRFAAVAFLQVRRFSHALLHLQVRGFSRRFATVAFLQVRRFSHPLCCSCLPPSSKVLTRFAAPPSSRVLTSLCCSCLPPSSKVLSRASLQLPSSKFEGSLTILLQLPSSKFEGSHALCCTSKFEGSHVALLQLSSSKFEGSHALRCSCLPPSSRVLTPLRCSCLPPSSKVFTPLRCSFFLPNSKVLTHSAAVPSLQVRRRFSRCFAAVPSLKVRRLSRASLQFLFSKFEGSHVLLSKFEGSPMRRCNSFSPSSKEVFTLLRFSTFSSSSKVLLRFVVVPSSKFKGSPLLSQDVKGETPSLIPPESGVDHCLRQDVKGERPSLIPPESGVDHCLRQDVKGERPSLIPPESGVDHCLRQDVKGERPSLIPPESGVDHYLRQDVKGERPSLIPPESRVDHCLRQDVNGK

Homology

[Close]

BLAST of Spg031343 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-26
Identity = 88/174 (50.57%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 107 QPVTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDR 166
           Q +TL EFFP++F   H +E     T +   +          EEVDNS   +QRTSVFDR
Sbjct: 78  QSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDR 137

Query: 167 IKPSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVA 226
           IKP TTR SVFQR+SMAT +EENQC  ST  R SAF+RLSIST +K + STS FDRLK+ 
Sbjct: 138 IKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMT 197

Query: 227 DDQPQRKMDNLKVKLFDEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSLT 268
           +DQ QR+M +LK K F E + D K+      P+ M R   V  +T    EGSLT
Sbjct: 198 NDQQQREMKSLKAKPFHEENDDDKIHSRV--PSRMKRKLSVDINT----EGSLT 245

[Close]

BLAST of Spg031343 vs. NCBI nr
Match: TYK02147.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-26
Identity = 88/173 (50.87%), Postives = 109/173 (63.01%), Query Frame = 0


Query: 109 VTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDRIK 168
           +TL EFFP++F   H KE       + + +          EEVDNS   ++RTSVF RIK
Sbjct: 80  ITLTEFFPRSFLEDHPKEILEVTACHTVSIVQVDNNYGSSEEVDNSNEIKKRTSVFYRIK 139

Query: 169 PSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADD 228
           PSTTR SVFQR+SMAT +EENQC  S STR+ AF+RLSIST +K + STS FDRLK+ +D
Sbjct: 140 PSTTRSSVFQRLSMATKEEENQCPTSISTRNFAFKRLSISTSKKDRPSTSAFDRLKMTND 199

Query: 229 QPQRKMDNLKVKLF-DEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSLT 268
           Q QR+M  LK KLF +E + D K+      P+ M R   V  ST    EGSLT
Sbjct: 200 QQQREMKTLKAKLFLEENNDDDKIHNHI--PSRMKRKLSVDIST----EGSLT 246

[Close]

BLAST of Spg031343 vs. NCBI nr
Match: TYJ99972.1 (hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-26
Identity = 86/213 (40.38%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 111 LNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDRIKPS 170
           +  F P++F   H +E     T + + +          +E+DNS   +QRTSVFDRIKPS
Sbjct: 15  IQAFLPRSFLNDHPEEVLEVTTCHAVSIAKVDNNYASSKEMDNSNEIKQRTSVFDRIKPS 74

Query: 171 TTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADDQP 230
           TT+ SVFQR+SMAT +EENQC   TSTR SAF+RLSISTL+K Q STSVFDRLK+ +DQ 
Sbjct: 75  TTQSSVFQRLSMATKEEENQCPTFTSTRTSAFKRLSISTLKKDQPSTSVFDRLKMTNDQQ 134

Query: 231 QRKMDNLKVKLFDEVSCDKKLQ-----KDFIPPNLMSRSPQVRCSTHPKFEGSLTRFAAV 290
           QR+M  LK K F +   + +L+      DF    +    P ++ S+      SL   + +
Sbjct: 135 QREMKTLKFKDFIKARSNARLETSPCFTDFKDCIVTFPCPSLKVSSMISSYSSLKASSML 194

Query: 291 AFLQVRRFSHALLHLQVRGFSRRFATVAFLQVR 306
           + +Q R+     L  ++ GF   F+  + +Q++
Sbjct: 195 SHIQARKLHRCFLIFKLEGFINAFSYASSIQMQ 227

[Close]

BLAST of Spg031343 vs. NCBI nr
Match: KAA0050143.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06400.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-25
Identity = 100/255 (39.22%), Postives = 138/255 (54.12%), Query Frame = 0


Query: 109 VTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDRIK 168
           +TL EFFP++F   H KE     T + + +          +EVDNS   +Q+TSVFDRIK
Sbjct: 80  ITLTEFFPRSFLEDHPKEILEVTTCHTVSIVEVDNNYVSSKEVDNSNEIKQKTSVFDRIK 139

Query: 169 PSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADD 228
           PSTTR SVFQR+SMAT +EENQC  STSTR SAF+RLSIST +K Q ST VF RLK+ +D
Sbjct: 140 PSTTRSSVFQRLSMATKEEENQCPTSTSTRTSAFKRLSISTSKKDQPSTYVFYRLKMTND 199

Query: 229 QPQRKMDNLKVKLFDEVSCDKKLQKDFIPP--------NLMSRSPQVRCSTHPKFEGSL- 288
            PQR+M  LK K+F E + D       +P         ++ + SP  +  T   +   + 
Sbjct: 200 -PQREMKILKTKIFHEENNDDGKIHSRVPSRMKRKLSIDISAASPLFKMLTSELYSSPIC 259

Query: 289 TRFAAVAFLQVRRFSHALLHLQVRGFSRRFATVAFLQVRRFSHPLCCSCLPPSSKVLTRF 342
            R  +   LQ R  S +  H+     SR    + ++ +RR S P+ C        +++  
Sbjct: 260 CRRGSFHVLQPRGSSSSSSHMCC---SREDCHLKYVALRRSSSPIGCI----KRMIISNM 319

[Close]

BLAST of Spg031343 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-25
Identity = 86/173 (49.71%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 107 QPVTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDR 166
           Q +TL EFFP++F   H KE       +   +          EEVDNS   +QRTSVFDR
Sbjct: 421 QSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDR 480

Query: 167 IKPSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVA 226
           IKP TTR SVFQR+S+ T +EENQC  ST TR SAF+ LSIST +K + STS FDRLK+ 
Sbjct: 481 IKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMI 540

Query: 227 DDQPQRKMDNLKVKLFDEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSL 267
           +DQ QR+M +LKVK F E + D K+      P+ M R   V  +T    EGSL
Sbjct: 541 NDQQQREMKSLKVKPFHEENDDDKIHSRV--PSRMKRKLSVDINT----EGSL 587

[Close]

BLAST of Spg031343 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-27
Identity = 88/174 (50.57%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 107 QPVTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDR 166
           Q +TL EFFP++F   H +E     T +   +          EEVDNS   +QRTSVFDR
Sbjct: 78  QSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDR 137

Query: 167 IKPSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVA 226
           IKP TTR SVFQR+SMAT +EENQC  ST  R SAF+RLSIST +K + STS FDRLK+ 
Sbjct: 138 IKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMT 197

Query: 227 DDQPQRKMDNLKVKLFDEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSLT 268
           +DQ QR+M +LK K F E + D K+      P+ M R   V  +T    EGSLT
Sbjct: 198 NDQQQREMKSLKAKPFHEENDDDKIHSRV--PSRMKRKLSVDINT----EGSLT 245

[Close]

BLAST of Spg031343 vs. ExPASy TrEMBL
Match: A0A5D3BRW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00340 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-26
Identity = 88/173 (50.87%), Postives = 109/173 (63.01%), Query Frame = 0


Query: 109 VTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDRIK 168
           +TL EFFP++F   H KE       + + +          EEVDNS   ++RTSVF RIK
Sbjct: 80  ITLTEFFPRSFLEDHPKEILEVTACHTVSIVQVDNNYGSSEEVDNSNEIKKRTSVFYRIK 139

Query: 169 PSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADD 228
           PSTTR SVFQR+SMAT +EENQC  S STR+ AF+RLSIST +K + STS FDRLK+ +D
Sbjct: 140 PSTTRSSVFQRLSMATKEEENQCPTSISTRNFAFKRLSISTSKKDRPSTSAFDRLKMTND 199

Query: 229 QPQRKMDNLKVKLF-DEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSLT 268
           Q QR+M  LK KLF +E + D K+      P+ M R   V  ST    EGSLT
Sbjct: 200 QQQREMKTLKAKLFLEENNDDDKIHNHI--PSRMKRKLSVDIST----EGSLT 246

[Close]

BLAST of Spg031343 vs. ExPASy TrEMBL
Match: A0A5D3BJM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00130 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-26
Identity = 86/213 (40.38%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 111 LNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDRIKPS 170
           +  F P++F   H +E     T + + +          +E+DNS   +QRTSVFDRIKPS
Sbjct: 15  IQAFLPRSFLNDHPEEVLEVTTCHAVSIAKVDNNYASSKEMDNSNEIKQRTSVFDRIKPS 74

Query: 171 TTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADDQP 230
           TT+ SVFQR+SMAT +EENQC   TSTR SAF+RLSISTL+K Q STSVFDRLK+ +DQ 
Sbjct: 75  TTQSSVFQRLSMATKEEENQCPTFTSTRTSAFKRLSISTLKKDQPSTSVFDRLKMTNDQQ 134

Query: 231 QRKMDNLKVKLFDEVSCDKKLQ-----KDFIPPNLMSRSPQVRCSTHPKFEGSLTRFAAV 290
           QR+M  LK K F +   + +L+      DF    +    P ++ S+      SL   + +
Sbjct: 135 QREMKTLKFKDFIKARSNARLETSPCFTDFKDCIVTFPCPSLKVSSMISSYSSLKASSML 194

Query: 291 AFLQVRRFSHALLHLQVRGFSRRFATVAFLQVR 306
           + +Q R+     L  ++ GF   F+  + +Q++
Sbjct: 195 SHIQARKLHRCFLIFKLEGFINAFSYASSIQMQ 227

[Close]

BLAST of Spg031343 vs. ExPASy TrEMBL
Match: A0A5A7U2K7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00980 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.5e-26
Identity = 100/255 (39.22%), Postives = 138/255 (54.12%), Query Frame = 0


Query: 109 VTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDRIK 168
           +TL EFFP++F   H KE     T + + +          +EVDNS   +Q+TSVFDRIK
Sbjct: 80  ITLTEFFPRSFLEDHPKEILEVTTCHTVSIVEVDNNYVSSKEVDNSNEIKQKTSVFDRIK 139

Query: 169 PSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVADD 228
           PSTTR SVFQR+SMAT +EENQC  STSTR SAF+RLSIST +K Q ST VF RLK+ +D
Sbjct: 140 PSTTRSSVFQRLSMATKEEENQCPTSTSTRTSAFKRLSISTSKKDQPSTYVFYRLKMTND 199

Query: 229 QPQRKMDNLKVKLFDEVSCDKKLQKDFIPP--------NLMSRSPQVRCSTHPKFEGSL- 288
            PQR+M  LK K+F E + D       +P         ++ + SP  +  T   +   + 
Sbjct: 200 -PQREMKILKTKIFHEENNDDGKIHSRVPSRMKRKLSIDISAASPLFKMLTSELYSSPIC 259

Query: 289 TRFAAVAFLQVRRFSHALLHLQVRGFSRRFATVAFLQVRRFSHPLCCSCLPPSSKVLTRF 342
            R  +   LQ R  S +  H+     SR    + ++ +RR S P+ C        +++  
Sbjct: 260 CRRGSFHVLQPRGSSSSSSHMCC---SREDCHLKYVALRRSSSPIGCI----KRMIISNM 319

[Close]

BLAST of Spg031343 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-25
Identity = 86/173 (49.71%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 107 QPVTLNEFFPKTF---HKKEKENFATSYCIDV----------EEVDNSENGEQRTSVFDR 166
           Q +TL EFFP++F   H KE       +   +          EEVDNS   +QRTSVFDR
Sbjct: 421 QSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDR 480

Query: 167 IKPSTTRPSVFQRMSMATSKEENQCSASTSTRHSAFQRLSISTLRKSQSSTSVFDRLKVA 226
           IKP TTR SVFQR+S+ T +EENQC  ST TR SAF+ LSIST +K + STS FDRLK+ 
Sbjct: 481 IKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMI 540

Query: 227 DDQPQRKMDNLKVKLFDEVSCDKKLQKDFIPPNLMSRSPQVRCSTHPKFEGSL 267
           +DQ QR+M +LKVK F E + D K+      P+ M R   V  +T    EGSL
Sbjct: 541 NDQQQREMKSLKVKPFHEENDDDKIHSRV--PSRMKRKLSVDINT----EGSL 587

The following BLAST results are available for this feature:

BLAST of Spg031343 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	1.8e-26	50.57	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK02147.1	3.0e-26	50.87	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYJ99972.1	3.0e-26	40.38	hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa]	[more]
KAA0050143.1	2.0e-25	39.22	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06400.1 retrotranspos...	[more]
KAA0040811.1	2.6e-25	49.71	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg031343 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg031343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	8.6e-27	50.57	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BRW2	1.5e-26	50.87	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BJM6	1.5e-26	40.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2K7	9.5e-26	39.22	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TGM1	1.2e-25	49.71	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg031343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 628..661
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 641..661

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031343.1	Spg031343.1	mRNA