Spg031088 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031088
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold11: 10670764 .. 10671304 (-)
RNA-Seq Expression	Spg031088
Synteny	Spg031088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGGACGCGGCATGGTTCGAGGCTTCTAACGTTGGAGGCGTGGGGTGGATCATTCGCGACTCAGACGGTTCTTTGGTAGGAGCGGGCTGCAAAAGAATTGTTAGGAAATCAGAGATCAAGATGATGGAGATCACTGCGATCATCGAAGGTGTTAAGCAAGTGTCGGAGAGGGTTAGGGATTACCCGAATTTGTTCAATCACCAGCTTTGTGGTTGAATCGGACGCTGAGATTATCATTAAGCTCATCAATGGCGAATCAGTGGACAACTCTGAGCTTTCGTTGCTGATTGACGAGGTTATCGGGTTGGCGAGTAAGGCGGGAATCATTCAGTTCTCCTTTTGTTCGAGAGAATCCAATAGCTTAGCGCACTCTCTTACGCGCATGGCGTCTGTTTCAGACGATTTTGTGTTTTTCGTTTTTGATCCTTCTCATTGCTTGAGAACGGATGGCGCCACTTTTTGTGGTAGTTGCCCTGGGTGGTTAGACCCTTTAATGAAGGACGTAAATGTAGTTCCTTTCCCGTTTCCTGTTTAA

mRNA sequence

ATGAACTCGGACGCGGCATGGTTCGAGGCTTCTAACGTTGGAGGCGTGGGGTGGATCATTCGCGACTCAGACGGTTCTTTGGTAGGAGCGGGCTGCAAAAGAATTGTTAGGAAATCAGAGATCAAGATGATGGAGATCACTGCGATCATCGAAGTGGACAACTCTGAGCTTTCGTTGCTGATTGACGAGGTTATCGGGTTGGCGAGTAAGGCGGGAATCATTCAGTTCTCCTTTTGTTCGAGAGAATCCAATAGCTTAGCGCACTCTCTTACGCGCATGGCGTCTGTTTCAGACGATTTTGTGTTTTTCGTTTTTGATCCTTCTCATTGCTTGAGAACGGATGGCGCCACTTTTTGTGGTAGTTGCCCTGGGTGGTTAGACCCTTTAATGAAGGACGTAAATGTAGTTCCTTTCCCGTTTCCTGTTTAA

Coding sequence (CDS)

ATGAACTCGGACGCGGCATGGTTCGAGGCTTCTAACGTTGGAGGCGTGGGGTGGATCATTCGCGACTCAGACGGTTCTTTGGTAGGAGCGGGCTGCAAAAGAATTGTTAGGAAATCAGAGATCAAGATGATGGAGATCACTGCGATCATCGAAGTGGACAACTCTGAGCTTTCGTTGCTGATTGACGAGGTTATCGGGTTGGCGAGTAAGGCGGGAATCATTCAGTTCTCCTTTTGTTCGAGAGAATCCAATAGCTTAGCGCACTCTCTTACGCGCATGGCGTCTGTTTCAGACGATTTTGTGTTTTTCGTTTTTGATCCTTCTCATTGCTTGAGAACGGATGGCGCCACTTTTTGTGGTAGTTGCCCTGGGTGGTTAGACCCTTTAATGAAGGACGTAAATGTAGTTCCTTTCCCGTTTCCTGTTTAA

Protein sequence

MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIEVDNSELSLLIDEVIGLASKAGIIQFSFCSRESNSLAHSLTRMASVSDDFVFFVFDPSHCLRTDGATFCGSCPGWLDPLMKDVNVVPFPFPV

Homology

[Close]

BLAST of Spg031088 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-07
Identity = 40/135 (29.63%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI----------- 60
           +N+DA+W ++++ GG+GWIIR  DG +V AG + +   + +K++E +AI           
Sbjct: 81  LNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLG 140

Query: 61  ------IEVDNSELSLL--------------IDEVIGLASKAGIIQFSFCSRESNSLAHS 105
                 IE D++E+  L              ++E++ L     I+ F+   RE+N  AHS
Sbjct: 141 VLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHS 200

[Close]

BLAST of Spg031088 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 36/128 (28.12%), Postives = 58/128 (45.31%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------- 60
           +N++AAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E         
Sbjct: 89  LNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEH 148

Query: 61  ---------------------VDNSELSLLIDEVIGLASKAGIIQFSFCSRESNSLAHSL 99
                                 D +E+  L++E+  +     I+     SRE+N +AH L
Sbjct: 149 CRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGL 208

[Close]

BLAST of Spg031088 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 37/136 (27.21%), Postives = 58/136 (42.65%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------- 60
           +N+DAAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E         
Sbjct: 89  LNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEH 148

Query: 61  -----------------------------VDNSELSLLIDEVIGLASKAGIIQFSFCSRE 99
                                         D +E+  L++E+  +     I+     SRE
Sbjct: 149 CRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISRE 208

[Close]

BLAST of Spg031088 vs. NCBI nr
Match: CAB4279811.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-04
Identity = 42/125 (33.60%), Postives = 55/125 (44.00%), Query Frame = 0


Query: 1    MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI----------- 60
            +N DAAW   + +GGVGW++RDS G +V AGCK  +R      ME  AI           
Sbjct: 1069 VNCDAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALLACVQSG 1128

Query: 61   ---IEVDNSELSLL--------ID---EVIGLASKAGIIQFSFC-----SRESNSLAHSL 96
               +EV++  L L+        ID   E I    K  + QF  C      R  N  AH +
Sbjct: 1129 LSKLEVESDSLQLIRMLGGEWNIDIAVETIVFDIKQLVCQFQHCVFLYTPRNCNKAAHKI 1188

[Close]

BLAST of Spg031088 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-07
Identity = 40/135 (29.63%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI----------- 60
           +N+DA+W ++++ GG+GWIIR  DG +V AG + +   + +K++E +AI           
Sbjct: 81  LNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLG 140

Query: 61  ------IEVDNSELSLL--------------IDEVIGLASKAGIIQFSFCSRESNSLAHS 105
                 IE D++E+  L              ++E++ L     I+ F+   RE+N  AHS
Sbjct: 141 VLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHS 200

[Close]

BLAST of Spg031088 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.7e-06
Identity = 36/128 (28.12%), Postives = 58/128 (45.31%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------- 60
           +N++AAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E         
Sbjct: 89  LNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEH 148

Query: 61  ---------------------VDNSELSLLIDEVIGLASKAGIIQFSFCSRESNSLAHSL 99
                                 D +E+  L++E+  +     I+     SRE+N +AH L
Sbjct: 149 CRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGL 208

[Close]

BLAST of Spg031088 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 37/136 (27.21%), Postives = 58/136 (42.65%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------- 60
           +N+DAAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E         
Sbjct: 89  LNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEH 148

Query: 61  -----------------------------VDNSELSLLIDEVIGLASKAGIIQFSFCSRE 99
                                         D +E+  L++E+  +     I+     SRE
Sbjct: 149 CRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISRE 208

[Close]

BLAST of Spg031088 vs. ExPASy TrEMBL
Match: A0A6J5UV01 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32434 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 42/125 (33.60%), Postives = 55/125 (44.00%), Query Frame = 0


Query: 1    MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI----------- 60
            +N DAAW   + +GGVGW++RDS G +V AGCK  +R      ME  AI           
Sbjct: 1069 VNCDAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALLACVQSG 1128

Query: 61   ---IEVDNSELSLL--------ID---EVIGLASKAGIIQFSFC-----SRESNSLAHSL 96
               +EV++  L L+        ID   E I    K  + QF  C      R  N  AH +
Sbjct: 1129 LSKLEVESDSLQLIRMLGGEWNIDIAVETIVFDIKQLVCQFQHCVFLYTPRNCNKAAHKI 1188

[Close]

BLAST of Spg031088 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-04
Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 1   MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKS-----------EIKMMEITAI 60
           +N DA W ++ + GG+GWI+RDS+G  + A C + + +S           E   +E+  I
Sbjct: 88  LNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTLEAGIKIEMESDCLEVVNI 147

Query: 61  IEVDN---SELSLLIDEVIGLASKAGIIQFSFCSRESNSLAHSLTRMASV 97
           I   +   +E+SL+++++        I  F     ++N +AH + R A V
Sbjct: 148 INKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRACV 197

The following BLAST results are available for this feature:

BLAST of Spg031088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	7.4e-07	29.63	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	1.4e-05	28.13	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	4.0e-05	27.21	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
CAB4279811.1	4.5e-04	33.60	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Spg031088 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg031088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	3.6e-07	29.63	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	6.7e-06	28.13	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	2.0e-05	27.21	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J5UV01	2.2e-04	33.60	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J1D4B6	6.3e-04	28.18	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Spg031088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..50 e-value: 8.5E-7 score: 28.8
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 2..92 e-value: 1.47573E-12 score: 58.4796

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031088.1	Spg031088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity