Spg031078 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031078
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 10499039 .. 10502489 (-)
RNA-Seq Expression	Spg031078
Synteny	Spg031078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGTGTCGATTTAATTTGGCCCTAATTTCAAATTCGAGATACCTCCACTCCTGGATTTTTCTTCCCTATGTGGTTGCTCTGTAGTTGAATTGTAGTGTAGATTTATTTGTTCATATCTTTTTTCTTCTTCTCTTTTCAGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAAAACGTTAATAACTAAGAGAGATAACAAAAAAATTTCATTTTCTCCCTTACTCTTTCTTACTTGTCAATATTTTAATGGGCCCTATCCCTACATACCGGTGTGCAGGCAAGTTTTGTTCTTTCTTCTCTCTATCCTCAATTTAATTTCAGAAATGGGAAAAAATTTCACTTTTAGTCCCCAAACTTTTATGAAACTAACATTTTAGTTCCTGAACTTTGATTTGTAACGATTTAGTCTTATACTTTCAATTTTGTAACGATTTAGTCCTATAATTTCAATTTTGTAACAATTTAGTCCTTAAATTTTAATAAGTAACAACTTAGTCCTTGTGTTTTCAAAATTGTAACAATTTAGTCTCTATAGTGAAAAATTAATGTAAAGATTATTAAAAAAATTTACCGAGGTAGATCAATAAACTAATTTAAAACCTAATATATTAATAAGCTACAAAGTTTAATCATTAAATAATAAAAATCGAGATTTAATTTTGACGAATATTTTTATGACGAGGATTAAATTGTTTCAAATTTAATGAAAGAGAGTGCGATTATGTCAATGCTTATGCTCCAAGATACATCAATCAAAAATGTTTTACTTTAAATTATAGATTTAATCTGTTGTCTTTATCTTTTCAGACAAAAACAAAAGATTGTTGTCCTTATTTAATTTATTAATCTATAATTAAAGGATCAATAAGCTAATAAATGCTTTAATTATGTCTCGTGTTCGTTACTATGGGTACTTAATATCGACCAAAAAAATTAAGTTTGAAATATATTTTGTTCATTTATTCTATCGCTATTCAATAGTTTCAAAGTGTGGGATGAAATGAACAACTTTAGAAATTTAAAGACTGGATTTATAATTAATATCGAAATATTGAAAGAAATTACAGGATTTTTATCAATACAGTTAAAAGATATAAATTTTGTCTATTGGCAAAATTGGGTTAGAAAATTAACGAGAAAAATTGTTACACCCCAGGTTTTATTTATCAACTAACCTAGCGACGTTATTAAAACTAATCGAGCACTCCGAAAATTTTAGCAACATAACAACATACATAAGACTAACCCAAAATTTTTTAAACACTGCTAAAACAAGAATAACACTTCTATAACATTTTCAATTACTCCACCAAACTTCAAACACACCATACGAGTCAGGTCTGGTATCAACAACTATCTAACCATAAACACAAGCTTAACAAACCTTACCGTTTATTTGAGACAAACTTAGGGTCTGTTTGGAATACCTTCTAGTTTAAGTGTTTTTCAATAATGCATTTTCTTTTAAACATTTTGTAAAAAAGTTATTTAGAATTTAAGCACTCATATGATTGGTTACATTTACTCATGAGTGTTTTTATACACAAGAAGTTACTATATACTAACAAACTCTTTTTAAAAATTTTGCTTTTAAGTGTTTTTCTCAAAATGGTTTATTTCTCAATCTCATTTTTTAATAAGTCATTTTTAATGATTGCCAAACACTAGAAATTTTTTTCAAATAGTTTTTTTTTTTCTAAATTAAACACTTGAAAAGTTAAACCAAACAAACCTTTAATTTTTATTAACTAAATGAGAAGATAGAGTTCAGTGTGTTTGGTTTAACTTTTCAAGTGTTTAATTTTGAAAATAAATCATTCTGAAAAAATTTATAGTGTTTGGCAACCACTAAAAATGACTTATTAGAAAACGAGATTGATAAATAAGTCATTTTGAGAGAAACACTTGAAACCAACTTTTTTAAAAAGACTTTTTAAGTAAACAATAACTTGTGTATAAAAACATTTGTGAGGAAATGCAACCAAACATATGAGTGTTTAAATTCTAAACAATTTTTATACAAAATGTTTTTTTAAAAAATGCATTATTAAAAACATTTAAATTAAAATGTATTCCAAACGGACTCTTCATTAAAATCAACACAACTAAGCCTAGAATTTCAACGAGAATAAATCCAGAACTAAACTAAATAGGACAAATAGTTGTCCAACCATAATAAGCAACATCTACACCATCCAAATGAAAATAAAAAGGGAAAACAACGTTAGCTAGTTATGGCCCCTCCTCATGCGCCTCCTCTACACAATCAAACAAACAACATGTTTTTCATGCGCAAACAACATGCTTTCTTAAAGCGGTAAACTAACAACATGCTCAAAAGCTAGTAAACGGCTTATTGTTGGGTTTTATGTCCTAAAACTCGTAGATAGTAAATGTACCTTTTGACCGAACATTAATAAAATGATGTATTATTCATTTCTCTGTGTTTGTATTGAGTAATCTTGTCTTATTAACCCTAATTCAATAAACTAAACATCCAAGGCTGATAGAATGAGGCTTGAACTAGTATGGGGATAAGATTGGGTACCTTATCCTGGTAACACTATGGATACGACCCGCTTTGTATTCTGATACAAACGTAATGATCCAACGCATTCATGTAGTTGACATGCGAGTGAGGGTATCCTGTGCAATGAGCTTGCATAAGACCGGACCGTGAAATAGTTAATCACTAACTATAACACCGTTAGTTAGCTTGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCTTTTGATTTGTACGGGTGAGAGTGGCCTGCACGTCGACTCAATAAGCCTATCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGAAATTCACTCCTTCCCGACTCTAGGGTAAGTAGAGGTGTGTTCTCTTAAGTGGTGTCTCCGGGTCTTTAACAATGGGCCCTGCCCTCTTTATGGCACGGGAGGCACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTAGCCCAGGGGTAAAACAGTAATTTGACCTAGCTGGGGTACGAACACATGTGAAGGGCTGACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCACAGTTAA

mRNA sequence

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGTATGGGGATAAGATTGGGTACCTTATCCTGGTAACACTATGGATACGACCCGCTTTGTATTCTGATACAAACGTAATGATCCAACGCATTCATGTAGTTGACATGCGAGTGAGGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCTTTTGATTTGGCTGACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCACAGTTAA

Coding sequence (CDS)

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGTATGGGGATAAGATTGGGTACCTTATCCTGGTAACACTATGGATACGACCCGCTTTGTATTCTGATACAAACGTAATGATCCAACGCATTCATGTAGTTGACATGCGAGTGAGGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCTTTTGATTTGGCTGACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCACAGTTAA

Protein sequence

MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKPPPSECHKSRICFDETEMDEFLKDSRYGDKIGYLILVTLWIRPALYSDTNVMIQRIHVVDMRVRDDLGNLVSILSGLWTPVREGLSFDLADLLLMVDIRGHRNISAVRRVQLWFYSGVNHS

Homology

[Close]

BLAST of Spg031078 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP----PPSECH--KSRICF 60
          MASLVLLLSEL+RHHNTNPDYWLT+PLPPPP PP    +V      P   C+  KSRIC 
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60

Query: 61 DETEMDEFLKDSR-YGDKIGY 75
          DET +DEFLK+SR  G  +G+
Sbjct: 61 DETVIDEFLKESRAIGTVVGH 81

[Close]

BLAST of Spg031078 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-09
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP   P S+  +        P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICFDETEMDEFLKDSR 68
          RIC DE  MDEFLK+SR
Sbjct: 61 RICADENVMDEFLKESR 77

[Close]

BLAST of Spg031078 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 44/81 (54.32%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLP-PPPPPPSACDAV-KPPPSECHKSRICFDETE 60
          MASLVLLLSELVRHHNTNPDYWLTLPLP P PPPPS+  AV K   S+C        +  
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDSAVAKSLSSKC--------QNN 60

Query: 61 MDEFLKDSRYGDKIGYLILVT 80
          M       RY   I +  L++
Sbjct: 61 MSRSASMKRYYSLIPFFFLIS 73

[Close]

BLAST of Spg031078 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-09
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP   P S+  +        P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICFDETEMDEFLKDSR 68
          RIC DE  MDEFLK+SR
Sbjct: 61 RICADENVMDEFLKESR 77

The following BLAST results are available for this feature:

BLAST of Spg031078 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904495.1	1.3e-15	62.96	uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida]	[more]
KAE8651190.1	6.9e-09	54.55	hypothetical protein Csa_001669 [Cucumis sativus]	[more]
KAG6580906.1	1.5e-08	54.32	hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg031078 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg031078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHI4	3.3e-09	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1	[more]

BLAST of Spg031078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031078.1	Spg031078.1	mRNA