Spg031073 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031073
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein SRC1-like
Location	scaffold11: 10668398 .. 10668682 (-)
RNA-Seq Expression	Spg031073
Synteny	Spg031073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAATCATGGAGAAAATCGGAGAGAAACTCCACATCGGAGGAGACCACAAGGGCGAGCACAAGGGCGAGCACCACGACGAGCACAAGCACGAGCACGGCGGGAAATCTGAGCACCATGGGGAAGAGCACAAGGAAGGGCTGATCGAGAAGATCAAGGACAAGATCCACGGAGATCATCACGATGAGAAGGGCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGGCGAGCACGGCCACCACGATGGCGGCCACAGCAGCAGCGACAGCGACAGCGACTGA

mRNA sequence

ATGTCAGGAATCATGGAGAAAATCGGAGAGAAACTCCACATCGGAGGAGACCACAAGGGCGAGCACAAGGGCGAGCACCACGACGAGCACAAGCACGAGCACGGCGGGAAATCTGAGCACCATGGGGAAGAGCACAAGGAAGGGCTGATCGAGAAGATCAAGGACAAGATCCACGGAGATCATCACGATGAGAAGGGCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGGCGAGCACGGCCACCACGATGGCGGCCACAGCAGCAGCGACAGCGACAGCGACTGA

Coding sequence (CDS)

ATGTCAGGAATCATGGAGAAAATCGGAGAGAAACTCCACATCGGAGGAGACCACAAGGGCGAGCACAAGGGCGAGCACCACGACGAGCACAAGCACGAGCACGGCGGGAAATCTGAGCACCATGGGGAAGAGCACAAGGAAGGGCTGATCGAGAAGATCAAGGACAAGATCCACGGAGATCATCACGATGAGAAGGGCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGGCGAGCACGGCCACCACGATGGCGGCCACAGCAGCAGCGACAGCGACAGCGACTGA

Protein sequence

MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHEHGGKSEHHGEEHKEGLIEKIKDKIHGDHHDEKGEKKKKKEKKKGEHGHHDGGHSSSDSDSD

Homology

[Close]

BLAST of Spg031073 vs. NCBI nr
Match: XP_022942109.1 (protein SRC1-like [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 7.7e-29
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1  MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE----HGGKSEHHGEEHKEGLIEKIKDK 60
          M+GIMEKIGEKLHIGGDHKGEHKGEHH++ KHE    HG KSEHHGE HKEGL+EKIKDK
Sbjct: 1  MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61 IHGDHHDEKGEKKKKKE-KKKGEHGHHDGGH-SSSDSDSD 95
          IHGDHHDEKGEKKKKKE KKKGE  HH+GGH SSSDSDSD
Sbjct: 61 IHGDHHDEKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 98

[Close]

BLAST of Spg031073 vs. NCBI nr
Match: KAG6596975.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 2.9e-28
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE------HGGKSEHHGEEHKEGLIEKIK 60
           M+GIMEKIGEKLHIGGDHKGEHKGEHH++ KHE      HG KSEHHGE HKEGL+EKIK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHGDHHDEKGEKKKKKE-KKKGEHGHHDGGH-SSSDSDSD 95
           DKIHGDHHD+KGEKKKKKE KKKGE  HH+GGH SSSDSDSD
Sbjct: 61  DKIHGDHHDDKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 100

[Close]

BLAST of Spg031073 vs. NCBI nr
Match: XP_023538905.1 (protein SRC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 5.5e-27
Identity = 85/108 (78.70%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE-----------HGGKSEHHGEEHKEGL 60
           MSGIMEKIGEKLHIGGDHKGEHKGEHH++ KHE           HG KSEHHGE HKEGL
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKDKHEHEKKHGEKSEHHGEGHKEGL 60

Query: 61  IEKIKDKIH-GDHHDEKGEKKKKKE-KKKGEHGHHDGGH-SSSDSDSD 95
           +EKIKDKIH GDHHDEKGEKKKKKE KKKGE  HH+GGH SSSDSDSD
Sbjct: 61  MEKIKDKIHGGDHHDEKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 106

[Close]

BLAST of Spg031073 vs. NCBI nr
Match: XP_022974702.1 (protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE----HGGKSEHHGEEHKEGLIEKIKDK 60
           MSGIMEKIGEKLHIGGDHKGEHKGEHH++ KHE    HG KSEHHGE HKEGL+EKIKDK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IH--GDHHDEKGEKKKKKEKKKGEHGHHDGGH-SSSDSDSD 95
           IH  GDHHDEKGEKKKKK++KK +  H +GGH SSSDSDSD
Sbjct: 61  IHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Spg031073 vs. NCBI nr
Match: XP_022973362.1 (protein SRC1-like [Cucurbita maxima] >XP_022975607.1 protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE----HGGKSEHHGEEHKEGLIEKIKDK 60
           MSGIMEKIGEKLHIGGDHKGEHKG+HH++ KHE    HG KSEHHGE HKEGL+EKIKDK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IH--GDHHDEKGEKKKKKEKKKGEHGHHDGGH-SSSDSDSD 95
           IH  GDHHDEKGEKKKKK++KK +  H +GGH SSSDSDSD
Sbjct: 61  IHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Spg031073 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-21
Identity = 71/106 (66.98%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIG------------GDHKGEHKGEHHDEHKHEHGGKSEHHGEEHKEG 60
           MSGI+ KI E LH+G            G+HKGEHKGEHH EHK EH G+ +HHG EHKEG
Sbjct: 1   MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGE-QHHG-EHKEG 60

Query: 61  LIEKIKDKIHGDHHDEKGEKKKKKEKKKGEHGHHDGGHSSSDSDSD 95
           L++KIKDKIHGD HD KGEKKKKK+KKK EHGH   GHSSS SDSD
Sbjct: 61  LVDKIKDKIHGDGHD-KGEKKKKKDKKKKEHGHDHHGHSSS-SDSD 102

[Close]

BLAST of Spg031073 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-11
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1  MSGIMEKIGEKLHIGGDHK-GEHKGEHHDEHKHEHGGKSEHHGEEHKEGLIEKIKDKIHG 60
          M+G++ KIG+ LHIGG +K GEHK E  +EHK       EH   EHKEG+++KIKDKIHG
Sbjct: 1  MAGLINKIGDALHIGGGNKEGEHKKE--EEHKKH---VDEHKSGEHKEGIVDKIKDKIHG 60

Query: 61 DH---HD-----EKGEKKKKKEKKKGEHGHHDGGHSSSDSDSD 95
               HD       GEKKKKK+KK  E  HHD GH SS SDSD
Sbjct: 61 GEGKSHDGEGKSHDGEKKKKKDKK--EKKHHDDGHHSSSSDSD 96

[Close]

BLAST of Spg031073 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-29
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1  MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE----HGGKSEHHGEEHKEGLIEKIKDK 60
          M+GIMEKIGEKLHIGGDHKGEHKGEHH++ KHE    HG KSEHHGE HKEGL+EKIKDK
Sbjct: 1  MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61 IHGDHHDEKGEKKKKKE-KKKGEHGHHDGGH-SSSDSDSD 95
          IHGDHHDEKGEKKKKKE KKKGE  HH+GGH SSSDSDSD
Sbjct: 61 IHGDHHDEKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 98

[Close]

BLAST of Spg031073 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-27
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE----HGGKSEHHGEEHKEGLIEKIKDK 60
           MSGIMEKIGEKLHIGGDHKGEHKGEHH++ KHE    HG KSEHHGE HKEGL+EKIKDK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IH--GDHHDEKGEKKKKKEKKKGEHGHHDGGH-SSSDSDSD 95
           IH  GDHHDEKGEKKKKK++KK +  H +GGH SSSDSDSD
Sbjct: 61  IHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Spg031073 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHDEHKHE----HGGKSEHHGEEHKEGLIEKIKDK 60
           MSGIMEKIGEKLHIGGDHKGEHKG+HH++ KHE    HG KSEHHGE HKEGL+EKIKDK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IH--GDHHDEKGEKKKKKEKKKGEHGHHDGGH-SSSDSDSD 95
           IH  GDHHDEKGEKKKKK++KK +  H +GGH SSSDSDSD
Sbjct: 61  IHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Spg031073 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGE----HKGEHHDEHKHEHGGKSEHHGEEHKEGLIEKIKDK 60
           MSG +EKIGEKLHIGGDHKGE    HKGEHHDEHK +H  K EHHGE HKEG+IEKIKDK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHK-KHEKKEEHHGEGHKEGIIEKIKDK 60

Query: 61  IHG--DHHDEKGEKKKKKEKKKGEHGH-HDGGHSSSDSDSD 95
           IHG   HHDEKGEKKKK++KKKGEHGH H GG SSSDSDSD
Sbjct: 61  IHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of Spg031073 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MSGIMEKIGEKLHIGGDHKGE----HKGEHHDEHKHEHGGKSEHHGEEHKEGLIEKIKDK 60
           MSG +EKIGEKLHIGGDHKGE    HKGEHHDEHK +H  K EHHGE HKEG+IEKIKDK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHK-KHEKKEEHHGEGHKEGIIEKIKDK 60

Query: 61  IHG--DHHDEKGEKKKKKEKKKGEHGH-HDGGHSSSDSDSD 95
           IHG   HHDEKGEKKKK++KKKGEHGH H GG SSSDSDSD
Sbjct: 61  IHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of Spg031073 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-12
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1  MSGIMEKIGEKLHIGGDHK-GEHKGEHHDEHKHEHGGKSEHHGEEHKEGLIEKIKDKIHG 60
          M+G++ KIG+ LHIGG +K GEHK E  +EHK       EH   EHKEG+++KIKDKIHG
Sbjct: 1  MAGLINKIGDALHIGGGNKEGEHKKE--EEHKKH---VDEHKSGEHKEGIVDKIKDKIHG 60

Query: 61 DH---HD-----EKGEKKKKKEKKKGEHGHHDGGHSSSDSDSD 95
               HD       GEKKKKK+KK  E  HHD GH SS SDSD
Sbjct: 61 GEGKSHDGEGKSHDGEKKKKKDKK--EKKHHDDGHHSSSSDSD 96

The following BLAST results are available for this feature:

BLAST of Spg031073 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942109.1	7.7e-29	84.00	protein SRC1-like [Cucurbita moschata]	[more]
KAG6596975.1	2.9e-28	81.37	Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023538905.1	5.5e-27	78.70	protein SRC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974702.1	1.2e-26	79.21	protein SRC1-like [Cucurbita maxima]	[more]
XP_022973362.1	2.8e-26	78.22	protein SRC1-like [Cucurbita maxima] >XP_022975607.1 protein SRC1-like [Cucurbit...	[more]

BLAST of Spg031073 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	2.8e-21	66.98	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	5.8e-11	55.34	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of Spg031073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQD3	3.7e-29	84.00	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]
A0A6J1IAZ2	6.0e-27	79.21	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A6J1I7B7	1.3e-26	78.22	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]
A0A5A7UF86	2.3e-26	79.21	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	2.3e-26	79.21	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]

BLAST of Spg031073 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	4.1e-12	55.34	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..71
None	No IPR available	PANTHER	PTHR34941:SF3	COLD-ACCLIMATION SPECIFIC PROTEIN 15	coord: 19..94
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 19..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031073.1	Spg031073.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding