Spg031028 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg031028
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold10: 23450980 .. 23451684 (+)
RNA-Seq ExpressionSpg031028
SyntenySpg031028
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTAGGACTATGGCAGGTGTCGAAAAACAAGCAAAACACATATGGACCAGATTTGAGGAGGCGAAAATTAGTTGAGTGCCTCGTTGAACTGGTACATGAGAGTGGCTGGAGGGGAGATAAGGCACATTCCAGCCTGGCTATCTAGCCCGACTACAACAAATGCTGAGGGAAAAGCATTCCCCTTGCACTATCGAGTCCACATCAACGATAGACTGCAAGGTACAACCCCTGAAACGGCAGTATGGAGCAATCTCTAAGATGTTGGGTCCAGGATGTAGTGGTTTCGGGTGAAATGAGGAGTACAAATGTGTTGAAGCTGAGAAGGAAATGTTCGACGTGTGGGTCAAGGTAAGGCCGTTGTTCATTCATATATACAATACTTGTATACTATGTACGCTAATATCGTCTGGTATATATGCAGTCTCACTTAGCTACGAATGGACTCCCGATCAAGCCATTCCCTCACTATGAGGAATTGGCCTTCGTGTTCGGCAAGGATAGAGCTAGCGGGGTGGGGTGTTCTGTGCCAGCTGAACAAGCCTCGAGCCACCTTGTGGACAAAGAGGGCAATTTCAACATGGGAGGGTCGCCAAAATATTATGTCCCAGTGCCACCTGCGTTTAATGTCTCCGTCGAGGTCGAGTTTGAGGAAGTTCCCATCACCCCTACCAGTAGGTCGAGCACAGATGGGACGTCATAG

mRNA sequence

ATGCATGTAGGACTATGGCAGGTGTCGAAAAACAAGCAAAACACATATGGACCAGATTTGAGGAGGCGAAAATTAGTTGAGTGCCTCGTTGAACTGTACAAATGTGTTGAAGCTGAGAAGGAAATGTTCGACGTGTGGGTCAAGTCTCACTTAGCTACGAATGGACTCCCGATCAAGCCATTCCCTCACTATGAGGAATTGGCCTTCGTGTTCGGCAAGGATAGAGCTAGCGGGGTGGGGTGTTCTGTGCCAGCTGAACAAGCCTCGAGCCACCTTGTGGACAAAGAGGGCAATTTCAACATGGGAGGGTCGCCAAAATATTATGTCCCAGTGCCACCTGCGTTTAATGTCTCCGTCGAGGTCGAGTTTGAGGAAGTTCCCATCACCCCTACCAGTAGGTCGAGCACAGATGGGACGTCATAG

Coding sequence (CDS)

ATGCATGTAGGACTATGGCAGGTGTCGAAAAACAAGCAAAACACATATGGACCAGATTTGAGGAGGCGAAAATTAGTTGAGTGCCTCGTTGAACTGTACAAATGTGTTGAAGCTGAGAAGGAAATGTTCGACGTGTGGGTCAAGTCTCACTTAGCTACGAATGGACTCCCGATCAAGCCATTCCCTCACTATGAGGAATTGGCCTTCGTGTTCGGCAAGGATAGAGCTAGCGGGGTGGGGTGTTCTGTGCCAGCTGAACAAGCCTCGAGCCACCTTGTGGACAAAGAGGGCAATTTCAACATGGGAGGGTCGCCAAAATATTATGTCCCAGTGCCACCTGCGTTTAATGTCTCCGTCGAGGTCGAGTTTGAGGAAGTTCCCATCACCCCTACCAGTAGGTCGAGCACAGATGGGACGTCATAG

Protein sequence

MHVGLWQVSKNKQNTYGPDLRRRKLVECLVELYKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGTS
Homology
[Close]
BLAST of Spg031028 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 0 

Query: 33  YKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASS-- 92
           +KC+EAEKE+FD WVKSH    GL  KP PHY++L   FGKDRA+G     P + ASS  
Sbjct: 11  HKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAA 70

Query: 93  HLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGTS 141
             + ++ +F    +  +Y+P PP FN + +   E++P TPTS+  T GTS
Sbjct: 71  ATIAEDAHFE---AQDFYIPDPPMFNTTEDAIEEDLPNTPTSK-PTIGTS 115

[Close]
BLAST of Spg031028 vs. NCBI nr
Match: KAA0058882.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASEGRT 201

[Close]
BLAST of Spg031028 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASDGRT 201

[Close]
BLAST of Spg031028 vs. NCBI nr
Match: TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 49  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 108

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 109 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASEGRT 151

[Close]
BLAST of Spg031028 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASDGRT 201

[Close]
BLAST of Spg031028 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 0 

Query: 33  YKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASS-- 92
           +KC+EAEKE+FD WVKSH    GL  KP PHY++L   FGKDRA+G     P + ASS  
Sbjct: 11  HKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAA 70

Query: 93  HLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGTS 141
             + ++ +F    +  +Y+P PP FN + +   E++P TPTS+  T GTS
Sbjct: 71  ATIAEDAHFE---AQDFYIPDPPMFNTTEDAIEEDLPNTPTSK-PTIGTS 115

[Close]
BLAST of Spg031028 vs. ExPASy TrEMBL
Match: A0A5A7USM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00480 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASEGRT 201

[Close]
BLAST of Spg031028 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASDGRT 201

[Close]
BLAST of Spg031028 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASEGRT 201

[Close]
BLAST of Spg031028 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 34  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLV 93
           KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+   
Sbjct: 99  KCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 158

Query: 94  DKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSRSSTDGT 140
                F+MG   + +   PP ++  V++  ++V  +  SR+S   T
Sbjct: 159 GGYDRFDMGDGNEDF---PPVYSQGVDISQDDVRASRPSRASEGRT 201

The following BLAST results are available for this feature:
BLAST of Spg031028 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158565.12.5e-1545.45uncharacterized protein LOC111025018 [Momordica charantia][more]
KAA0058882.17.5e-1239.62retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ96194.19.8e-1239.62retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p... [more]
TYK10915.19.8e-1239.62retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p... [more]
KAA0031555.19.8e-1239.62retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon... [more]
BLAST of Spg031028 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg031028 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DW731.2e-1545.45uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7USM33.6e-1239.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CWL24.7e-1239.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRV14.7e-1239.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DCZ14.7e-1239.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg031028 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg031028.1Spg031028.1mRNA