Spg031024 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg031024
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold10: 22189463 .. 22192608 (+)
RNA-Seq ExpressionSpg031024
SyntenySpg031024
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCCGCATCCGAAGCATCGAGACGTCGGGAGATGGCCTCTCGACGCCATCTCTCGGGTCTTCAAGAATAGGCTGCTTCAAAACTTGATCCGTTTGGCGCTGATTTCGAGTCCCGAGCACTCCACTAAGGTCTTTTCATCGCCTCGGCATCCCATGGACTTCAAGATGGATCAAAACCGCGCTAAAATCCTCGAATTAACACCAAAATTAAATATGGGCTCCATTGAACCACTTGATACTAAATTCCTACAAAACATAACTTTAAGAGGAAAAATTATCGTAAAACTAACAAGATTAAGCACAATTAATCATGCACAATTAATCATGGGCATGAAGGATTGGAATTCTGTAATTCCATACAGCGGAAGCGTGATTGGGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGGCAATAATATTAGAACTATTCTAAATATATATTAAGGCTAAGCATACAAAAATATTAGATCTAAATCTAATTTATATAGTATCAAATTACTTACTCTCGTTGACGACTCAGATTAAATTCACCAACTGCTTGTGAATTAATCACGAACTAGTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGTTGGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAGTAGGAGAATGAATGAGATGCCTTTCACCCCACCCCAGGGGTCCTATATATAGTAAAGGCCAAGACTTTTTTCCTAATAGGAAAAGGAAGACCTTTTCCTAATAGGAAAAGGAAGACCTTTTCCTAATAGGAAAAGGTCTCTAATTTTAATAAATAAATAATTAATTCCTTAATTAATTAATTTCCCAATTAAATATCATATATTTAATCTTATAGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTTTCCTAATAGGAAAAGGTCTCTAATTTTAATAAATAATTGATTAATTCCATAATTAATTAATTACCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTCTCAAGAATTAATTTTTGAAATTAATTAAAAAATTATATTATAAAGTTTCATAAACTTTATATTATAATGCATCAATATACATTATACGATTCCCCAAATAAATTGAACACTTTCAATTTACAATTTATACTTAATTTCTTCAAGTCTCTTTACGAGCTACCAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTAACCAAGTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTCACTGTAGAATATTTCTGTGTCCACGGATATTGACCAATGCAGTAAGTCAATTCTTCACGTGTGTTCGTAACACCAGCTCGGTCAAATTACCATTTTACCCCTAGGTTACCTCTGGTTCCTTAAGTACCGCTGATCCCTCTAATGAACAAGTTGTTTAGGGTCCTACCACTAAACAGGAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTGTTCAAGTTCCAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTAGGCTTATTGAGTCGGCAAACTGGCCACTCTCACCCATACAAATCTAAGGACAATCCTATTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTACATTTGACCGAACATTAATAAAAATGATGTATTATTCAATGTTTGTATTATATCTTGTCTTATCAACCCTAATCCAATAAACTAAACATCCAAGGCTAATAGAATGAGGCTTGAACTAGAATGTAGGACATACGAGGATCAATGTTCAAGTTTTAGCCTGAAGGGTCTGTAGTATAGGGATGAGGCTGGGTACCTTATCCTAGTGACACTATGGATACGACCCGCTTTGTATTTTGATACAAACGCAATGATCCAACGTGTTCGTGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAAGATCGGACCGCGAAATAGTTAACCACTAACTGTAACACCGTTAGTTAGCTTGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGCCTTAATCCTGAGTGGATTATGGACTCCTGTCCATGAGGCATTGTCCTTTGATTTGTACAGGTGAGAGTGGCCTGCTCGCCGACTCAATATGATTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCTTCCCAACTTTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCATTGGTACTTAAGGACCAAGAGGTAGCCCAGGGGTAAAACGGTAATTTGACCTAGTTGGGGTACGAACACACGTGAAGGGCTAACTTGCTGTTGACGGTCGATATCCGTGGACACAGAAATATATCTGCAGCGAGAAGAGTGCAGCTGTGGTTCTTTAGTGGAGTGAACCACAGTTAACGAATATTGATTAACTTGGTTAACGAGTTTAGCCAATTAATCTCATATCGTTGGAGATTCTGATCTGCAGGTCCATTAGGTCCCACCGGTAGCTCACTAGTGAAGGTGTTCATATAACACATGCGGAAGCAATTTTAGGATCGGAGGCACTTAACTACATCAATTTTAGAAAATGAAAACATGCTGTCCAAATGCCGTAAGGAGAGAGCAGAATGTTTACCAACCTTTTGGAGACCGATTCAACAACTCCCTTTGATTCCTTTGATCACGAACGGTGTGTGGACCACCTCTAGTGTCTTCCCTACTATTCTCCAGGCCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCACTAGAGAGATATATGGAGATGAGTGA

mRNA sequence

ATGGTCCCGCATCCGAAGCATCGAGACGTCGGGAGATGGCCTCTCGACGCCATCTCTCGGGTCTTCAAGAATAGGCTGCTTCAAAACTTGATCCGTTTGGCGCTGATTTCGAGTCCCGAGCACTCCACTAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGTTGGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAAATATTTCTGTGTCCACGGATATTGACCAATGCAGAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTGTTCAAGTTCCAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTGAGAGTGGCCTGCTCGCCGACTCAATATGATTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCTTCCCAACTTTAGGGTTGTTCATTAGAGGAGCATTGGTACTTAAGGACCAAGAGGCCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCACTAGAGAGATATATGGAGATGAGTGA

Coding sequence (CDS)

ATGGTCCCGCATCCGAAGCATCGAGACGTCGGGAGATGGCCTCTCGACGCCATCTCTCGGGTCTTCAAGAATAGGCTGCTTCAAAACTTGATCCGTTTGGCGCTGATTTCGAGTCCCGAGCACTCCACTAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGTTGGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAAATATTTCTGTGTCCACGGATATTGACCAATGCAGAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTGTTCAAGTTCCAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTGAGAGTGGCCTGCTCGCCGACTCAATATGATTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCTTCCCAACTTTAGGGTTGTTCATTAGAGGAGCATTGGTACTTAAGGACCAAGAGGCCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCACTAGAGAGATATATGGAGATGAGTGA

Protein sequence

MVPHPKHRDVGRWPLDAISRVFKNRLLQNLIRLALISSPEHSTKRKRDWDRFCEHHHYGYTGMTLRLLEAGDCWESRGSLEGNSLRNISVSTDIDQCRVPLGPGEDGAPLFKFQNQPLREHTSTYPNRGRSEFHLVLLCSQPPFGLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKDQEAKNDLWESIEIGNGKGMLEGSSTREIYGDE
Homology
[Close]
BLAST of Spg031024 vs. NCBI nr
Match: TYK26313.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 151 VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD 200
           VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Sbjct: 197 VRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKD 245

[Close]
BLAST of Spg031024 vs. NCBI nr
Match: KAA0067076.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 151 VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD 200
           VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Sbjct: 174 VRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKD 222

[Close]
BLAST of Spg031024 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 151 VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG 189
           VRVA  PTQY YHFGDKTEWGAGNI+ QDGIHSFP LG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg031024 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-09
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 145 GLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG 189
           GL    +RVA  PTQY YHF DKTEWGAGNI+ QDGIHSFP LG
Sbjct: 163 GLRDMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLG 206

[Close]
BLAST of Spg031024 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 150 MVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG 189
           +VRVA  PTQY YHFGDKTEWGAGN + QDGIHSFP LG
Sbjct: 222 LVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg031024 vs. ExPASy TrEMBL
Match: A0A5A7VKV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001280 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 151 VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD 200
           VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Sbjct: 174 VRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKD 222

[Close]
BLAST of Spg031024 vs. ExPASy TrEMBL
Match: A0A5D3DRR2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00930 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 151 VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD 200
           VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Sbjct: 197 VRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKD 245

[Close]
BLAST of Spg031024 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.3e-10
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 151 VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG 189
           VRVA  PTQY YHFGDKTEWGAGNI+ QDGIHSFP LG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg031024 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 150 MVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG 189
           +VRVA  PTQY YHFGDKTEWGAGN + QDGIHSFP LG
Sbjct: 222 LVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg031024 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 145 GLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG 189
           GL    +RVA  PTQY YHF DKTEWGAGNI+ QDGIHSFP LG
Sbjct: 163 GLRDMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLG 206

The following BLAST results are available for this feature:
BLAST of Spg031024 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK26313.12.3e-1377.55gag/pol protein [Cucumis melo var. makuwa][more]
KAA0067076.12.3e-1377.55gag/pol protein [Cucumis melo var. makuwa][more]
KAA0065950.11.5e-0984.21ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop... [more]
KAA0043328.12.6e-0972.73gag/pol protein [Cucumis melo var. makuwa][more]
KAA0025994.12.6e-0979.49retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa][more]
BLAST of Spg031024 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg031024 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKV91.1e-1377.55Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00128... [more]
A0A5D3DRR21.1e-1377.55Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00930... [more]
A0A5A7VFG57.3e-1084.21Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SJY01.2e-0979.49Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... [more]
A0A5A7TKJ41.2e-0972.73Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023... [more]
BLAST of Spg031024 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg031024.1Spg031024.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding