Spg030998 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030998
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein
Location	scaffold10: 21891890 .. 21895354 (-)
RNA-Seq Expression	Spg030998
Synteny	Spg030998

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCGCGAGTGCTGGGTGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACATTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCTCGTGTTTGACTTTCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGATTTTCCACTTTCAGGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGCAGTTGTATATTGAGTCCGTCCATATTGTAAATGTTTTGTAAGGATTGGACAATTTAGTTCTACAGGTCGTGGTTGTATAAACCCCATTTGTATATGTTTTGGTTGTGAAATCTATATCAGGTTATTTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTGTATATTAGAAGTTTTTCAGGGATTCCGCTGTGTTTTGTTTCATGTGGAATGTTTTATATCTAAGATTAGTATATTTATCAGGTTCTAAGTTTTAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCTGGACTAAGCTAGTAGGTGGTCTGGGAGGGGGTGTGACACTACAGACACTACGTGATAAACAGTTGTACGCTAAGTTTAGCAAATGTGAGTTCTGGTTGAATCAAGTGGTGTTCTTAGGGCATGTGGTTTCTGCGGACGGAGTTTGTGTTGATCTGCAGAAACTGGAAGCTATTGTCAACTGGGAGAGGCCAACTAGTGCAACAGAGGTGCGTAGTTTCCTAGGCCTGGCCGGATACTACAGACGTTTTGTTGATGATTTCTCACGATTAGCATTACCCTTGACAGCTTTGACAAGGAAGAATACTAAGTTTGAGTGGTCAGATAAATGCGAACAGAGTTTCCAATAAAGTGTTATTTGAGTAATTCAGTAATTTGGTTATTGAATAATCGAGTTTGCATTAATAAACCCTAAATCCAATAAACTAAGATCCAAGGTTATTTAAATGAAACTTGGACTAGTATGTGGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAAAGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATGCTGCTGACATTATGTGATTCGGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTACGAGACATGCCGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGATCGCGAAATAGTAACCACTAGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGTTGACCTAGGTAGCTCAATCTCAATCCTGAGTCTGTTATGAACCCCTTTTAGGAGGGATTGTCCTTAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCACGGGCAAGACCCAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTAAGTAGATGTGTCTTCCCTTAAGGGCTGATTCCGGGGCTTGAACAAAGGCGCGTCGTCCTCTCCTGGCCCGAGAGGAACTCCTGTTTAGTTGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGATAACCCAGAGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACATACGTGAAGGATTGGCTTACTGCATTAGTCGATATCCGTGGACACAGAAATATTCTACAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAACTTGGTTAATGAGTTTGGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGAGACTTGAGGCAATTAAGTATAAATTATAAATTGAAAGTGTTCAATTTATTTGGGGAATCGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTAGAATATAATTTTTGAATTAATTTCAAAAATTAATTATTGAGAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTAAATCCCTAAGATTAAATATATGATATTTAATTGAGTAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGATCTTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACTTTTTCCTATTAGGAAAAGGTCTTCCTTTTCTTATTAGGAAAAAGGTCTTGGCCTTTACTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCACATTCATTCTCCTACTCTCAGAGAATTCCCCTCAAGGCTTCCTCTAGACTCCCACTAGTCTCCTGCTTCTAGAAGTCTCAAAGTCATACCGGTGTAGCCATTGTGGTGGTGTTCGCACTAGTTCGTGATTAATTCACAAGCAGTTGGTGAATTTAATCTGAGTCGTCAACGAGAGTAAGTAATTTGTTACTTTATAAATTAGATTTAGATCTAATATTTTTGTATGCTTAGCCGTAATATATATTTAGAATAGTTCTAATATTATTGCCAATGTATTGGTATTTTAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTTCGCTTTACGGAATTACGGAATTCCAATCCTTCAATTGGTATCAGAGTTGATCGTAGATCTAATTTTGTTCTCTAAAATTTGCATTGGCTATTGGTGGGATTGATTAATGCATAATGTATGTATGGTTTGCATTGAACTGTTTAGGTTAATTTTATGGCCATAGATTTTACTGTTTTTATGTGATTTGATCATGTAAGGGCCCGGTGTTTCGGGTATTTTATGTAAAATCGAGTCCTATGTAAGTCCGAGTCTAGAATAGGTTTTTTATGAGATAAAAATCGGAGAAATCGCGACACTGTCATGATTATAGCACGCGTTAAGGATTCGCAACAGGACGGTTCAAGGCGGTTGGGCGGTCCGGTTCACGCGGACTGGCTGGGCTGGGACCAATTTTGTCCGGTTCAACTGGAATTTGGCTCGGTTCGTGGTTTTCGTAGCTGGTTCGAAGTGGTTCGGGTCGGTTCGGACGATCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTTAG

mRNA sequence

ATGCAGTCGCGAGTGCTGGGTGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTCCATTAGGTCCCACTGCACGCGTTAAGGATTCGCAACAGGACGGTTCAAGGCGGTTGGGCGGTCCGGTTCACGCGGACTGGCTGGGCTGGGACCAATTTTGTCCGGTTCAACTGGAATTTGGCTCGGTTCGTGGTTTTCGTAGCTGGTTCGAAGTGGTTCGGGTCGGTTCGGACGATCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTTAG

Coding sequence (CDS)

ATGCAGTCGCGAGTGCTGGGTGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTCCATTAGGTCCCACTGCACGCGTTAAGGATTCGCAACAGGACGGTTCAAGGCGGTTGGGCGGTCCGGTTCACGCGGACTGGCTGGGCTGGGACCAATTTTGTCCGGTTCAACTGGAATTTGGCTCGGTTCGTGGTTTTCGTAGCTGGTTCGAAGTGGTTCGGGTCGGTTCGGACGATCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTTAG

Protein sequence

MQSRVLGGPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELLVPDTLPTSAESSRSSSSPLGPTARVKDSQQDGSRRLGGPVHADWLGWDQFCPVQLEFGSVRGFRSWFEVVRVGSDDLDQYLELQKDF

Homology

[Close]

BLAST of Spg030998 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-20
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 7   GGPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELLVPDTL 66
           GGPHYDKDDG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL
Sbjct: 556 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTL 615

Query: 67  PTSAESSRSSSSPLG 72
           PTSAESS S+S   G
Sbjct: 616 PTSAESSESNSRSAG 630

[Close]

BLAST of Spg030998 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-20
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 7   GGPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELLVPDTL 66
           GGPHYDKDDG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL
Sbjct: 142 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTL 201

Query: 67  PTSAESSRSSSSPLG 72
           PTSAESS S+S   G
Sbjct: 202 PTSAESSESNSRSAG 216

[Close]

BLAST of Spg030998 vs. NCBI nr
Match: KAA0041324.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 13  KDDGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVE 48
           KDDGSAGR PLHRRTSKRWLYWACPTQR  VMLV+
Sbjct: 796 KDDGSAGRTPLHRRTSKRWLYWACPTQRNEVMLVK 830

[Close]

BLAST of Spg030998 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 13  KDDGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVE 48
           KDDGSAGR PLHRRTSKRWLYWAC TQR  VMLV+
Sbjct: 780 KDDGSAGRTPLHRRTSKRWLYWACSTQRNEVMLVK 814

[Close]

BLAST of Spg030998 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 7   GGPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELLVPDTL 66
           GGPHYDKDDG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL
Sbjct: 556 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTL 615

Query: 67  PTSAESSRSSSSPLG 72
           PTSAESS S+S   G
Sbjct: 616 PTSAESSESNSRSAG 630

[Close]

BLAST of Spg030998 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 7   GGPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELLVPDTL 66
           GGPHYDKDDG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL
Sbjct: 142 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTL 201

Query: 67  PTSAESSRSSSSPLG 72
           PTSAESS S+S   G
Sbjct: 202 PTSAESSESNSRSAG 216

[Close]

BLAST of Spg030998 vs. ExPASy TrEMBL
Match: A0A5A7TCY8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003250 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 13  KDDGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVE 48
           KDDGSAGR PLHRRTSKRWLYWACPTQR  VMLV+
Sbjct: 796 KDDGSAGRTPLHRRTSKRWLYWACPTQRNEVMLVK 830

[Close]

BLAST of Spg030998 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 13  KDDGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVE 48
           KDDGSAGR PLHRRTSKRWLYWAC TQR  VMLV+
Sbjct: 780 KDDGSAGRTPLHRRTSKRWLYWACSTQRNEVMLVK 814

The following BLAST results are available for this feature:

BLAST of Spg030998 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065516.1	4.3e-20	74.67	uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]	[more]
TYJ98800.1	4.3e-20	74.67	uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]	[more]
KAA0041324.1	3.4e-09	88.57	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK02787.1	2.9e-08	85.71	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]

BLAST of Spg030998 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030998 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGQ5	2.1e-20	74.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BG85	2.1e-20	74.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TCY8	1.7e-09	88.57	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BTJ5	1.4e-08	85.71	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]

BLAST of Spg030998 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030998.1	Spg030998.1	mRNA