Spg030991 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030991
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold10: 22327253 .. 22328125 (+)
RNA-Seq Expression	Spg030991
Synteny	Spg030991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTAAATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTCTTAATGACAGACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACATTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGATTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAAGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCTTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACACCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAGGG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACACCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAGGG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACACCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAGGG

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG

Homology

[Close]

BLAST of Spg030991 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 61/100 (61.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW------------------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                   
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  --------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPG 74
                   FNVSVGSTGIVRGDDVCWLH VFR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg030991 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 61/99 (61.62%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 VSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG 75
          + V           GIVR DDVCWLH VFRAK A GPGG
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg030991 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 61/99 (61.62%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 VSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG 75
          + V           GIVR DDVCWLH VFRAK A GPGG
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg030991 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 9.7e-19
Identity = 60/102 (58.82%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-- 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +  
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  ---------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG 75
                    FN+SV STGIVRGDDVCWLH VFRAK   GP G
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRG 102

[Close]

BLAST of Spg030991 vs. NCBI nr
Match: TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 7.0e-17
Identity = 57/91 (62.64%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
          MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S     
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSR---- 60

Query: 61 VSVGSTGIVRGDDVCWLHTVFRAKLASGPGG 75
              S GIVR DDVCWLH+VFRAK ASGPGG
Sbjct: 61 ----SAGIVRRDDVCWLHSVFRAKTASGPGG 83

[Close]

BLAST of Spg030991 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 61/100 (61.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW------------------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                   
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  --------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPG 74
                   FNVSVGSTGIVRGDDVCWLH VFR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg030991 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 61/99 (61.62%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 VSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG 75
          + V           GIVR DDVCWLH VFRAK A GPGG
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg030991 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 61/99 (61.62%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 VSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG 75
          + V           GIVR DDVCWLH VFRAK A GPGG
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg030991 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.7e-19
Identity = 60/102 (58.82%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-- 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +  
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  ---------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG 75
                    FN+SV STGIVRGDDVCWLH VFRAK   GP G
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRG 102

[Close]

BLAST of Spg030991 vs. ExPASy TrEMBL
Match: A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 57/91 (62.64%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
          MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S     
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSR---- 60

Query: 61 VSVGSTGIVRGDDVCWLHTVFRAKLASGPGG 75
              S GIVR DDVCWLH+VFRAK ASGPGG
Sbjct: 61 ----SAGIVRRDDVCWLHSVFRAKTASGPGG 83

The following BLAST results are available for this feature:

BLAST of Spg030991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062407.1	2.1e-21	61.00	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK27998.1	4.0e-20	61.62	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	4.0e-20	61.62	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01041.1	9.7e-19	58.82	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
TYK14494.1	7.0e-17	62.64	uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]	[more]

BLAST of Spg030991 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V638	1.0e-21	61.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DX39	1.9e-20	61.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	1.9e-20	61.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3BMJ4	4.7e-19	58.82	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CU23	3.4e-17	62.64	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg030991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030991.1	Spg030991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity