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Spg030906 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAAGGTCCATAATTGTCAATTTTCCCTCTCTCTGCGTTTTCCGTCGAGCCAGCGACCCAGCCGGAGCAGTCGCGCCGTCATCGCGAGCAACCGCCAGCGACGCCCTTGTGCCGTTGCGTGTTGCTCTCCTTCAGGCCGTTTTCCTCTCCGACGGGTGCAACAGACCGTGGTGATGTTCTTCCCTCTCACGTCTTCGCACGAGCAGCAAGGGACGTGGGTTTTTTAATCAATTTTAGAATGGACAGCAGTAGTTTATGTGCATTTTTCCGGTGATCTTAGCTTTGGGTAAGTTGGATTGAAAGTTTATTGGCCAATTTTATGTTTAATCAAGAATGCCCATTGATCGTTGGACTTGATTCTAAGGTACCTCAAGCAATCGGAGTTTTGGAGCGTGAAAATTTGGATGTAATTAGAAGTCGTCCAGCAAGTTTTTCCCGTTTTTCTACGAATTTCCTCTAGCAAGTATTCTTCGAGTGGGTTACTTCTTTGAGCAATTCCAGCAGTGGGTAAGAAGAATTTAGTTTATTATGGTTGATTAAAATGTCTTAGAAAAATACATCTCTTAGTTTCGAGCTATCTTTAGCGTTTGGAGGTTTAATCATCGATTTGGTGGAAATCTAGAACTCGGGCAGCAGGCTTAAGCGTAAGTTGGGTGAGTTTTTGGGTGCTAAATCCTCTCCGAGTTGATTGGGTCATAGTGGAACAATCTCACTCACTCTCAACTCGCCTGTTCGACTCCCATCGACATCACCCTCTCTCTCTCTCTCTGACAGCTAAATCGTCGTTGACGACTCGAGAATCGCTCCTCTCTATCCCGACTTCTCTTTCCCGGCCGTCCCTCCCCTGCAATCTCTCACTTGGCTGTTCGTACTGATGTGTGTTTCTGTAAAGACTTAGCTTAGTTACGATTGCTGCAATCACGATTAAGTTTTTATTTTTTTTTTTAAATTTATAAATATTCTCAATCTTTTTTTTATAATGTTGTTGGAATGCCCAATATCAGATGGCAATTAGCAATAAATATCTACTTTCTTCTAGTCCATGGTGGGTGGACTCCTTTTTTGGTTGTTTTTTTTTGTATGCCCTCCTACCTTCTTTCATTTTTTTCTCAGCGTTAGTTTCTTAAGAAAAAACAAAAACTTTCTTCTTGCCCAAGCAGCCGTAACTTCGGAAGTGAGATAACATTTTTTAGAGTCTATGCTTTCAATGAAAGAAAGGCATTTTATAATTCGGTTTTCTTTTTGAAGTCTAACTTATGAGGTAAGCTTCTCACTTTTCACCATACTGTTTGTTGTATTTTACGGTGGCAGGCTGAGGCTTCTTGGTAAACTTGTAGCAGAGGAAAGAGCTACTAGTCCAATTTAATATTATAAATTTAAACAGATTGTATCCGTGTCAAGGAAGGATTTTGTTTTATCCTGACGATCCCAGATGGATGGTGCTGCCATCAAAGATGGCATAGCTAAGGACCATATGAACAAAGATCATACTGAGGGTATGAGAGCAAGGTCGCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTACGGTGCTTTTACCACTATTTAATGTTTTCATCTTACATTATAATTTTTGAAGTATTATTATGCATGTTAGATTTACAAATTCTTTAAGGTTGGGAGGTGAAGTTGATGATTCTTTAATATCTTATTTTTTCACTATGGAGTTTGTATATTTGAGTATCAGTCTCGTTTCATTTATTCAATGAAAAGTTTCGTTGCTCGATAAAAAAAATCTTATTTTCTTGAAAACTCAATATGTTCTACGAGTACTAGACTGCCAACTCTTGTGTTAAAGTTTTGAGCATCCACACAATTAGACATACGATAGTTTATAATCTACAATTTTCCATTCTAGTGTAGCCAAAATATTCTCCAATATCAGGTCAGTTCTCTCTCCCAGGGACCTCTTTCTAGCTTCACCATGCTTGGGCTTTAGGGTGGCTAAAAGCTCATATTCTCTCTTTCTCCAACATCTTTTCATAATGTTCTCTGGTAACTGGACACTCCCACTCAACTTCACAGTGCTAATGAAGCTCCTGGATTAGACCCCCTGCACTATAATAATAGTTCATCTTCAAGTTCTCTTTGGGGGTTTGGCATGGTTGATGAAGTTAGGAAATGTGGCAGAAACATCATTGATACTTGAAGCCTTTGTTGCACTTGTTAAGAAAGGAACTTGCTGCAATATTCTCCAGTTGGGCCCTGCCTATCATGGTGCAATCCATGAAACTTGTGGGTTATAATTTTCTGTGAGGGATTTTCATGGTTGGAAAGGGTATGTGAAGGTTCTTGGTTGTTCTTTGAGGTCTCGGCAGGTCTACCATTAATAACAATGGGGTGAGGGCTTTCTTTTAAGGGATAAGCTAGAATTCTTAGATCTAGAACAGTTATAGCATCACTGCAGAAAATATGGCATGAGAGGACCCAAAGGGTCCTTAGAAAGAGGAGCTCTTATGTAGAACTATTGGACTCAATCAGACTCTTTGCATCCAGTTTGTGTTCTCTAAACTTACTTTTTTGTAATTATTATCCTGTAAATATATTGGCCAAATGGAATTCTTTTTGTAACCTTTTGGCCTTTAGGGATGTCTCATCTCCCCTTTTTGTAATATGTCTCATCAATATACTAAGTTTCCGATTAAAAAAGACATATATCAGCACTGTAAGTTTGTAGGTTCAAAAACAGAAAAGGAAATGATAAGAAAATATAAAATTGGGAACTTGCAGCATGGCTCAAAAGTCAAAATTAATGAGAAGATGACATAAATCAGCACTGTAAGCTGTAGGTCCAGAAACAGGGATATAATTCTTCTCTTTAGAGCTGTAATTTAACAGTTTTGTGGCACTAGCCTATATTTTTACAAAAGATTTGCCTAAATCAAATTTGGAGAAAATGGAACTCTTTGCAAGTATGTCGATGATGTTCTTGAATAGAGAAATAGGTTAATCAGACAATTCTGACAATCCAAAGAGAAAATGCGTACAACCCTTAGTTGGAAAAGGTATAAATATTCTTTGGATATCTTCTGCACTGCATCACCTGTTTTTGTTGTCTTGATTGGATTCACTTTCTTTAAAATACTATTTTAGTGTAGGTACTTCCTTATACATTGTCATTGATGTGATTGAAATTGTTTGTTCTTTACCAAGTTTTTGTGGAGACAATTGCATTTGGTTGCACATTCATTCAAATTTGGTAAAAACCTTTTCCAGGTATGCTTATCCTCCCCCAGATGGCAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGTTTTTATACACAGGTTATTATTTACAAATGAAATGATAAGTTGTGTGATTAACCTATGGAGCACATTTAAAGTAAATACTCACAACTTAGTTTTCTAATTGAAGGTGTTGCATTTAATGAACAAGATGAACATTCCAGCTCCTTTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCATTCCTGCACCACCATCACCATCACTAACGTTGCCACCACTTCCTCCTCCTGTCACTCCAAGGCCTCAAGTAACAAATATGTCTAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGATTGATAAATGGAGCTTTTACACATATGGTTGCTCATATTTGATTCACTTTAAGTACGTAGATGCATATGTGTACTTTTGGTTTGTTGGTGGAATGCAGTTGTTTTGAAGATGTTGGTGGACGTATTTAGATCCTTAACTGTTTGTTGCTTTCTTTCAATTTTTTTTCCTTGGTAAGCCGCACACTTGTTTACTTTATGAAAAAAAATTAATAGAAAGAAATTATTTGTGAAAATATAAGCATTGATGCAGTAATTACTTTTTCCTTCTTTTTCCCTGATTAGTAGGAATTCTCTTCCCGCCGTTTTTTTCTCTTTGTTTGACAGAAAACAAAACTTGTATTGTAAACAAAGGCCATAAAAGAGAGGGGAGATAAGGTATCCCCAGTGCACCAAGGGTTGTAAGTTGTAACAAATCACAATTATATGTTACTTTGCTCATTTGATTTGGGATTGCTTTTTCAAGACTTTTACGGTTTGCTTGGCCCATAACAAGAATCGTGTTCATATCTTGGAGGAGGTTCCATTTCATCGTCTTGTTTAAGGATAAGGATAGTTTTCTTTAGAGTGTTGTCCTTTTTGCACTTTATGGTGCATCTGGACTAGAGAAACAATAGAATCTTTAAGGGTGTTGAGAAGCTTTGGGAGAGGGTTTGACCCCTCGTTAGATTTTATGTCTTGTTTTGGGTGTCCGTGTTTGAATACTTTTGTAATTATTCATTAAGTTTTATTCTTTTGAGTTGGAGTCTTTCTTGTAGGTTAGGTTAGCTTCTGGTTTGCTCCTCCTTTTTTTGGTTGCCATTTTTGTAGACTTGTTTTTTTAGTTGGTCCATCTTTGTTGGCTTTTTTTTTGGGTACTTTTGTATTCTTTCATTTTTCTACAATAAAAGCGGTTTCTTGATTAAAAGAAGCATAATTATAAATTTTTCTACAATAAAAGTCGTTTCTTGATCAAAAGAAGCATGATTATAAAAAACATTTGAAAGAGTGCACCAAGTAGAGGGGAAAATTGTAACAATATCTCGAAAGGAATGCTGACCAAGATCCTCCCCATTAAACGTCATTTTATTTCTCCCAACCCATAGCCACTAGAGAAGAGCCATTGTTGGGCATATGATCCTACTAGGTCCTAAAAGTGGTGTTAGAGATGAGTATGAGTTTGAAGAAGGATGTCGAATTGTTCTTGGGTCTAGTTGATATTGAAGATTTGGAAGAGATGGCACCAGGTTGA ATGGATGGTGCTGCCATCAAAGATGGCATAGCTAAGGACCATATGAACAAAGATCATACTGAGGGTATGAGAGCAAGGTCGCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTATGCTTATCCTCCCCCAGATGGCAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGTTTTTATACACAGGTGTTGCATTTAATGAACAAGATGAACATTCCAGCTCCTTTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCATTCCTGCACCACCATCACCATCACTAACGTTGCCACCACTTCCTCCTCCTGTCACTCCAAGGCCTCAAGTAACAAATATGTCTAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTCCTAAAAGTGGTGTTAGAGATGAGTATGAGTTTGAAGAAGGATGTCGAATTGTTCTTGGGTCTAGTTGATATTGAAGATTTGGAAGAGATGGCACCAGGTTGA ATGGATGGTGCTGCCATCAAAGATGGCATAGCTAAGGACCATATGAACAAAGATCATACTGAGGGTATGAGAGCAAGGTCGCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTATGCTTATCCTCCCCCAGATGGCAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGTTTTTATACACAGGTGTTGCATTTAATGAACAAGATGAACATTCCAGCTCCTTTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCATTCCTGCACCACCATCACCATCACTAACGTTGCCACCACTTCCTCCTCCTGTCACTCCAAGGCCTCAAGTAACAAATATGTCTAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTCCTAAAAGTGGTGTTAGAGATGAGTATGAGTTTGAAGAAGGATGTCGAATTGTTCTTGGGTCTAGTTGATATTGAAGATTTGGAAGAGATGGCACCAGGTTGA MDGAAIKDGIAKDHMNKDHTEGMRARSLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPVTPRPQVTNMSSDESEMESSEEVLKVVLEMSMSLKKDVELFLGLVDIEDLEEMAPG Homology
BLAST of Spg030906 vs. NCBI nr
Match: XP_031743239.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X5 [Cucumis sativus] >XP_031743240.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X5 [Cucumis sativus] >XP_031743241.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X5 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 9.5e-65 Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of Spg030906 vs. NCBI nr
Match: XP_011656912.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X3 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 9.5e-65 Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of Spg030906 vs. NCBI nr
Match: XP_004139973.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus] >XP_011656911.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus] >XP_031743236.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 9.5e-65 Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of Spg030906 vs. NCBI nr
Match: XP_031743237.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cucumis sativus] >KAE8646822.1 hypothetical protein Csa_005326 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 9.5e-65 Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of Spg030906 vs. NCBI nr
Match: XP_023540623.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540624.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540625.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63 Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy Swiss-Prot
Match: Q8RWV8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 8.8e-29 Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy Swiss-Prot
Match: F1Q8J0 (RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15 Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy Swiss-Prot
Match: Q3MHP0 (RNA-binding region-containing protein 3 OS=Bos taurus OX=9913 GN=RNPC3 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14 Identity = 59/137 (43.07%), Postives = 72/137 (52.55%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy Swiss-Prot
Match: Q3UZ01 (RNA-binding region-containing protein 3 OS=Mus musculus OX=10090 GN=Rnpc3 PE=2 SV=2) HSP 1 Score: 79.0 bits (193), Expect = 6.1e-14 Identity = 55/114 (48.25%), Postives = 68/114 (59.65%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy Swiss-Prot
Match: Q4G055 (RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 PE=1 SV=2) HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13 Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy TrEMBL
Match: A0A0A0KCT1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118290 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 4.6e-65 Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy TrEMBL
Match: A0A6J1EXB4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111439218 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 6.7e-64 Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy TrEMBL
Match: A0A6J1DHL2 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X3 OS=Momordica charantia OX=3673 GN=LOC111020131 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 3.3e-63 Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy TrEMBL
Match: A0A6J1DDU0 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020131 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 3.3e-63 Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0
BLAST of Spg030906 vs. ExPASy TrEMBL
Match: A0A6J1DFW4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020131 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 3.3e-63 Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0
BLAST of Spg030906 vs. TAIR 10
Match: AT1G09230.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 128.3 bits (321), Expect = 6.2e-30 Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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